Members of BTB gene family of scaffold proteins suppress nitrate uptake and nitrogen use efficiency

Plant Physiology

Volumn 171, Issue 2, 2016, Pages 1523-1532

  Araus, Viviana ^a   Vidal, Elena A ^a   Puelma, Tomas ^a   Alamos, Simón ^a   Mieulet, Delphine ^b   Guiderdoni, Emmanuel ^b   Gutiérrez, Rodrigo A ^a  

^a PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

^b UMR AGAP   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CARRIER PROTEIN; NITRIC ACID DERIVATIVE; NITROGEN; PLANT PROTEIN;

ARABIDOPSIS; BIOMASS; DRUG EFFECTS; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MULTIGENE FAMILY; ORYZA;

ARABIDOPSIS; BIOMASS; GENE EXPRESSION REGULATION, PLANT; GENE REGULATORY NETWORKS; MEMBRANE TRANSPORT PROTEINS; MULTIGENE FAMILY; NITRATES; NITROGEN; ORYZA; PLANT PROTEINS;

EID: 84973657634     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.15.01731     Document Type: Article

References (65)

1. Azuaje FJ (2014) Selecting biologically informative genes in co-expression networks with a centrality score. Biol Direct 9: 12
2. Beatty PH, Anbessa Y, Juskiw P, Carroll RT, Wang J, Good AG (2010) Nitrogen use efficiencies of spring barley grown under varying nitrogen conditions in the field and growth chamber. Ann Bot (Lond) 105: 1171-1182
3. Beuve N, Rispail N, Laine P, Cliquet J-B, Ourry A, Le Deunff E (2004) Putative role of g -aminobutyric acid (GABA) as a long- distance signal in up-regulation of nitrate uptake in Brassica napus L. Plant Cell Environ 27: 1035-1046
4. Bi Y-M, Kant S, Clarke J, Gidda S, Ming F, Xu J, Rochon A, Shelp BJ, Hao L, Zhao R, et al (2009) Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling. Plant Cell Environ 32: 1749-1760
5. Chardon F, Barthélémy J, Daniel-Vedele F, Masclaux-Daubresse C (2010) Natural variation of nitrate uptake and nitrogen use efficiency in Arabidopsis thaliana cultivated with limiting and ample nitrogen supply. J Exp Bot 61: 2293-2302
6. Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R (2006) OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics 22: 699-707
7. Clarkson DT, Gojon A, Saker LR, Wiersema PK, Purves PK, Purves JV, Tillard P, Arnold GM, Paans AJM, Vaalburg W, Stulen I (1996) Nitrate and ammonium influxes in soybean (Glycine max) roots: direct comparison of 13N and 15N tracing. Plant Cell Environ 19: 859-868
8. Conte MG, Gaillard S, Lanau N, Rouard M, Périn C (2008) GreenPhylDB: a database for plant comparative genomics. Nucleic Acids Res 36: D991-D998
9. Crawford NM, Forde BG (2002) Molecular and developmental biology of inorganic nitrogen nutrition. The Arabidopsis Book 1: e0011, doi: 10.199/tab.0011.
10. Dawson CJ, Hilton J (2011) Fertiliser availability in a resource-limited world: Production and recycling of nitrogen and phosphorus. Food Policy 36: S14-S22
11. Diaz C, Lemaître T, Christ A, Azzopardi M, Kato Y, Sato F, Morot-Gaudry J-F, Le Dily F, Masclaux-Daubresse C (2008) Nitrogen recycling and remobilization are differentially controlled by leaf senescence and development stage in Arabidopsis under low nitrogen nutrition. Plant Physiol 147: 1437-1449
12. Dobermann A, Cassman KG (2002) Plant nutrient management for enhanced productivity in intensive grain production systems of the United States and Asia. Plant Soil 247: 153-175
13. Du L, Poovaiah BW (2004) A novel family of Ca2+/calmodulin-binding proteins involved in transcriptional regulation: interaction with fsh/ Ring3 class transcription activators. Plant MolBiol 54: 549-569
14. Eckes P, Schmitt P, Daub W, Wengenmayer F (1989) Overproduction of alfalfa glutamine synthetase in transgenic tobacco plants. Mol Gen Genet 217: 263-268
15. Fang Z, Xia K, Yang X, Grotemeyer MS, Meier S, Rentsch D, Xu X, Zhang M (2013) Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice. Plant Biotechnol J 11: 446-458
16. Filleur S, Dorbe M, Cerezo M, Orsel M, Granier F, Gojon A, Daniel- Vedele Y (2001) An Arabidopsis T-DNA mutant affected in Nrt2 genes is impaired in nitrate uptake. FEBS Lett 489: 220-224
17. Gallais A, Hirel B (2004) An approach to the genetics of nitrogen use efficiency in maize. J Exp Bot 55: 295-306
18. Gifford ML, Banta JA, Katari MS, Hulsmans J, Chen L, Ristova D, Tranchina D, Purugganan MD, Coruzzi GM, Birnbaum KD (2013) Plasticity regulators modulate specific root traits in discrete nitrogen environments. PLoS Genet 9: e1003760
19. Gingerich DJ, Hanada K, Shiu S-H, Vierstra RD (2007) Large-scale, lineage-specific expansion of a bric-a-brac/tramtrack/broad complex ubiquitin-ligase gene family in rice. Plant Cell 19: 2329-2348
20. Good AG, Shrawat AK, Muench DG (2004) Can less yield more? Is reducing nutrient input into the environment compatible with maintaining crop production? Trends Plant Sci 9: 597-605
21. Gupta N, Gupta AK, Gaur VS, Kumar A (2012) Relationship of nitrogen use efficiency with the activities of enzymes involved in nitrogen uptake and assimilation of finger millet genotypes grown under different nitrogen inputs. ScientificWorldJournal 2012: 625-731
22. Gutiérrez RA (2012) Systems biology for enhanced plant nitrogen nutrition. Science 336: 1673-1675
23. Gutiérrez RA, Shasha DE, Coruzzi GM (2005) Systems biology for the virtual plant. Plant Physiol 138: 550-554
24. Habash D, Massiah A (2001) The role of cytosolic glutamine synthetase in wheat. Ann Appl Biol 138: 83-89
25. He X, Qu B, Li W, Zhao X, Teng W, Ma W, Ren Y, Li B, Li Z, Tong Y (2015) The nitrate inducible NAC transcription factor TaNAC2-5A controls nitrate response and increases wheat yield. Plant Physiol 169: 1991-2005
26. Hempel FD, Feldman LJ (1994) Bi-directional inflorescence development in Arabidopsis thaliana: Acropetal initiation of flowers and basipetal initiation of paraclades. Planta 192: 276-286
27. Hirel B, Le Gouis J, Ney B, Gallais A (2007) The challenge of improving nitrogen use efficiency in crop plants: towards a more central role for genetic variability and quantitative genetics within integrated approaches. J Exp Bot 58: 2369-2387
28. Ho CH, Lin SH, Hu HC, Tsay YF (2009) CHL1 functions as a nitrate sensor in plants. Cell 138: 1184-1194
29. Hu HC, Wang YY, Tsay YF (2009) AtCIPK8, a CBL-interacting protein kinase, regulates the low-affinity phase of the primary nitrate response. Plant J 57: 264-278
30. Huang NC, Liu KH, Lo HJ, Tsay YF (1999) Cloning and functional characterization of an Arabidopsis nitrate transporter gene that encodes a constitutive component of low-affinity uptake. Plant Cell 11: 1381-1392
31. Ikram S, Bedu M, Daniel-Vedele F, Chaillou S, Chardon F (2012) Natural variation of Arabidopsis response to nitrogen availability. J Exp Bot 63: 91-105
32. Jeon JS, Lee S, Jung KH, Jun SH, Jeong DH, Lee J, Kim C, Jang S, Yang K, Nam J, et al (2000) T-DNA insertional mutagenesis for functional genomics in rice. Plant J 22: 561-570
33. Jeong DH, An S, Park S, Kang HG, Park GG, Kim SR, Sim J, Kim YO, Kim MK, Kim SR, et al (2006) Generation of a flanking sequence-tag database for activation-tagging lines in japonica rice. Plant J 45: 123-132
34. Jing Q, Van Keulen H, Hengsdijk H, Cao W, Bindraban PS, Dai T, Jiang D (2009) Quantifying N response and N use efficiency in rice-wheat (RW) cropping systems under different water management. J AgricSci 147: 303
35. Ju T, Xing G, Chen X, Zhang S (2009) Reducing environmental risk by improving N management in intensive Chinese agricultural systems. Proc Natl Acad Sci U S A 106: 3041-3046
36. Kant S, Bi Y-M, Rothstein SJ (2011) Understanding plant response to nitrogen limitation for the improvement of crop nitrogen use efficiency. J Exp Bot 62: 1499-1509
37. Kiba T, Feria-Bourrellier AB, Lafouge F, Lezhneva L, Boutet-Mercey S, Orsel M, Bréhaut V, Miller A, Daniel-Vedele F, Sakakibara H, Krapp A (2012) The Arabidopsis nitrate transporter NRT2.4 plays a double role in roots and shoots of nitrogen-starved plants. Plant Cell 24: 245-258
38. Lassaletta L, Billen G, Grizzetti B, Garnier J, Leach AM, Galloway JN (2014) Food and feed trade as a driver in the global nitrogen cycle: 50- year trends. Biogeochemistry 118: 225-241
39. Lea PJ, Azevedo RA (2006) Nitrogen use efficiency. 1. Uptake of nitrogen from the soil. Ann ApplBiol 149: 243-247
40. Lemaître T, Gaufichon L, Boutet-Mercey S, Christ A, Masclaux-Daubresse C (2008) Enzymatic and metabolic diagnostic of nitrogen deficiency in Arabidopsis thaliana Wassileskija accession. Plant Cell Physiol 49: 1056-1065
41. Li Y, Ren B, Ding L, Shen Q, Peng S, Guo S (2013) Does chloroplast size influence photosynthetic nitrogen use efficiency? PLoS One 8: e62036
42. Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, Bader GD (2010) Cytoscape Web: an interactive web-based network browser. Bioinformatics 26: 2347-2348
43. Lu Y, Luo F, Yang M, Li X, Lian X (2011) Suppression of glutamate synthase genes significantly affects carbon and nitrogen metabolism in rice (Oryza sativa L.). Sci China Life Sci 54: 651-663
44. Malagoli P, Lainé P, Le Deunff E, Rossato L, Ney B, Ourry A (2004) Modeling nitrogen uptake in oilseed rape cv Capitol during a growth cycle using influx kinetics of root nitrate transport systems and field experimental data. Plant Physiol 134: 388-400
45. Man H, Pollmann S, Weiler EW, Kirby EG (2011) Increased glutamine in leaves of poplar transgenic with pine GS1a caused greater anthranilatesynthetasea-subunit (ASA1) transcript and protein abundances: an auxin-related mechanism for enhanced growth in GS transgenics? J Exp Bot 62: 4423-4431
46. Mandadi KK, Misra A, Ren S, McKnight TD (2009) BT2, a BTB protein, mediates multiple responses to nutrients, stresses, and hormones in Arabidopsis. Plant Physiol 150: 1930-1939
47. Martin A, Lee J, Kichey T, Gerentes D, Zivy M, Tatout C, Dubois F, Balliau T, Valot B, Davanture M, et al (2006) Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. Plant Cell 18: 3252-3274
48. Masclaux-Daubresse C, Chardon F (2011) Exploring nitrogen remobilization for seed filling using natural variation in Arabidopsis thaliana. J Exp Bot 62: 2131-2142
49. Masclaux-Daubresse C, Daniel-Vedele F, Dechorgnat J, Chardon F, Gaufichon L, Suzuki A (2010) Nitrogen uptake, assimilation and remobilization in plants: challenges for sustainable and productive agriculture. Ann Bot (Lond) 105: 1141-1157
50. Migge A, Carrayol E, Hirel B, Becker TW (2000) Leaf-specific overexpression of plastidic glutamine synthetase stimulates the growth of transgenic tobacco seedlings. Planta 210: 252-260
51. Moll RH, Kamprath EJ, Jackson WA (1982) Analysis and interpretation of factors which contribute to efficiency of Nitrogen Utilization. Agron J 74: 562-564
52. Moyano TC, Vidal EA, Contreras-López O, Gutiérrez RA (2015) Constructing simple biological networks for understanding complex high-throughput data in plants. Methods Mol Biol 1284: 503-526
53. Obara M, Sato T, Sasaki S, Kashiba K, Nagano A, Nakamura I, Ebitani T, Yano M, Yamaya T (2004) Identification and characterization of a QTL on chromosome 2 for cytosolic glutamine synthetase content and panicle number in rice. TheorAppl Genet 110: 1-11
54. Proost S, Van Bel M, Sterck L, Billiau K, Van Parys T, Van de Peer Y, Vandepoele K (2009) PLAZA: a comparative genomics resource to study gene and genome evolution in plants. Plant Cell 21: 3718-3731
55. Puelma T, Gutiérrez RA, Soto A (2012) Discriminative local subspaces in gene expression data for effective gene function prediction. Bioinformatics 28: 2256-2264
56. Ren S, Mandadi KK, Boedeker AL, Rathore KS, McKnight TD (2007) Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1. Plant Cell 19: 23-31
57. Riveras E, Alvarez JM, Vidal EA, Oses C, Vega A, Gutiérrez RA (2015) The calcium ion is a second messenger in the nitrate signaling pathway of Arabidopsis. Plant Physiol 169: 1397-1404
58. Robert HS, Quint A, Brand D, Vivian-Smith A, Offringa R (2009) BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development. Plant J 58: 109-121
59. Robertson GP, Vitousek PM (2009) Nitrogen in agriculture: Balancing the cost of an essential resource. Annu Rev Environ Resour 34: 97-125
60. Schofield RA, Bi YM, Kant S, Rothstein SJ (2009) Over-expression of STP13, a hexose transporter, improves plant growth and nitrogen use in Arabidopsis thaliana seedlings. Plant Cell Environ 32: 271-285
61. Telfer A, Bollman KM, Poethig RS (1997) Phase change and the regulation of trichome distribution in Arabidopsis thaliana. Development 124: 645-654
62. Tsay YF, Schroeder JI, Feldmann KA, Crawford NM (1993) The herbicide sensitivity gene CHL1 of Arabidopsis encodes a nitrate-inducible nitrate transporter. Cell 72: 705-713
63. Wilkinson MD, Haughn GW (1995) UNUSUAL FLORAL ORGANS controls meristem identity and organ primordia fate in Arabidopsis. Plant Cell 7: 1485-1499
64. Xu G, Fan X, Miller AJ (2012) Plant nitrogen assimilation and use efficiency. Annu Rev Plant Biol 63: 153-182
65. Yanagisawa S, Akiyama A, Kisaka H, Uchimiya H, Miwa T (2004) Metabolic engineering with Dof1 transcription factor in plants: Improved nitrogen assimilation and growth under low-nitrogen conditions. ProcNatlAcadSci USA 101: 7833-7838