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Volumn 9, Issue 3, 1994, Pages 367-381

Sequence comparison significance and poisson approximation

Author keywords

Clumping; DNA; Dynamic programming sequence comparison; Poisson approximation; Protein; Sequence alignment

Indexed keywords


EID: 84972546031     PISSN: 08834237     EISSN: None     Source Type: Journal    
DOI: 10.1214/ss/1177010382     Document Type: Article
Times cited : (112)

References (30)
  • 3
    • 0002005293 scopus 로고
    • Two moments suffice for Poisson approximations: The Chen-Stein method
    • Arratia, R., Goldstein, L. and Gordon, L. (1989). Two moments suffice for Poisson approximations: the Chen-Stein method. Ann. Probab. 17 9-25.
    • (1989) Ann. Probab , vol.17 , pp. 9-25
    • Arratia, R.1    Goldstein, L.2    Gordon, L.3
  • 4
    • 0000051438 scopus 로고
    • An extreme value distribution for sequence matching
    • Arratia, R., Gordon, L. and Waterman, M. S. (1986). An extreme value distribution for sequence matching. Ann. Statist. 14 971-993.
    • (1986) Ann. Statist , vol.14 , pp. 971-993
    • Arratia, R.1    Gordon, L.2    Waterman, M.S.3
  • 5
    • 0000960430 scopus 로고
    • The Erdös-Rényi Law in distribution, for coin tossing and sequence matching
    • Arratia, R., Gordon, L. and Waterman, M. S. (1990). The Erdös-Rényi Law in distribution, for coin tossing and sequence matching. Ann. Statist 18 539-570.
    • (1990) Ann. Statist , vol.18 , pp. 539-570
    • Arratia, R.1    Gordon, L.2    Waterman, M.S.3
  • 6
    • 0000964654 scopus 로고
    • Stochastic Scrabble: A law of large numbers for sequence matching with scores
    • Arratia, R., Morris, P. and Waterman, M. S. (1988). Stochastic Scrabble: a law of large numbers for sequence matching with scores. J. Appl. Probab. 25 106-119.
    • (1988) J. Appl. Probab , vol.25 , pp. 106-119
    • Arratia, R.1    Morris, P.2    Waterman, M.S.3
  • 7
    • 0001619220 scopus 로고
    • A phase transition for the score in matching random sequences allowing deletions
    • Arratia, R. and Waterman, M.S. (1994). A phase transition for the score in matching random sequences allowing deletions. Ann. Appl. Probab. 4 200-225.
    • (1994) Ann. Appl. Probab. , vol.4 , pp. 200-225
    • Arratia, R.1    Waterman, M.S.2
  • 8
    • 0011627561 scopus 로고
    • Viral src gene products are related to the catalytic chain of mammalian cAMP-dependent protein kinase
    • Barker, W. C. and Dayhoff, M. O. (1982). Viral src gene products are related to the catalytic chain of mammalian cAMP-dependent protein kinase. Proc. Nat Acad. Sci. U.S.A. 79 2836.
    • (1982) Proc. Nat Acad. Sci. U.S.A , vol.79 , pp. 2836
    • Barker, W.C.1    Dayhoff, M.O.2
  • 9
    • 0001678047 scopus 로고
    • Longest common subsequences of two random sequences
    • Chvátal, V. and Sankoff, D. (1975). Longest common subsequences of two random sequences. J. Appl. Probab. 12 306-315.
    • (1975) J. Appl. Probab , vol.12 , pp. 306-315
    • Chvátal, V.1    Sankoff, D.2
  • 10
    • 0025277887 scopus 로고
    • Significance of protein sequence similarities
    • Collins, J. F. and Coulson, A. F. W. (1990). Significance of protein sequence similarities. Methods in Enzymology 183 474.
    • (1990) Methods in Enzymology , vol.183 , pp. 474
    • Collins, J.F.1    Coulson, A.F.W.2
  • 11
    • 0023434940 scopus 로고
    • Protein and nucleic acid sequence database searching: A suitable case for parallel processing
    • Coulson, A. F. W., Collins, J. F. and Lyall, A. (1987). Protein and nucleic acid sequence database searching: a suitable case for parallel processing. Comput. J. 30 420.
    • (1987) Comput. J , vol.30 , pp. 420
    • Coulson, A.F.W.1    Collins, J.F.2    Lyall, A.3
  • 13
    • 0019858614 scopus 로고
    • Similar amino acid sequences: Chance or common ancestry?
    • Doolittle R. F. (1981). Similar amino acid sequences: chance or common ancestry? Science 214 149-159.
    • (1981) Science , vol.214 , pp. 149-159
    • Doolittle, R.F.1
  • 14
    • 0020533055 scopus 로고
    • Simian sarcoma virus one gene, v-sis, is derived from the gene (or genes) encoding a platelet-derived growth factor
    • Doolittle, R. F., Hunkapiller, M. W., Hood, L. E., Devare, S. G., et al. (1983). Simian sarcoma virus one gene, v-sis, is derived from the gene (or genes) encoding a platelet-derived growth factor. Science 221 275.
    • (1983) Science , vol.221 , pp. 275
    • Doolittle, R.F.1    Hunkapiller, M.W.2    Hood, L.E.3    Devare, S.G.4
  • 15
    • 0026913444 scopus 로고
    • Poisson, compound Poisson and process approximations for testing statistical significance in sequence comparisons
    • Goldstein, L. and Waterman, M. S. (1992). Poisson, compound Poisson and process approximations for testing statistical significance in sequence comparisons. Bull. Math. Biol. 54 785-812.
    • (1992) Bull. Math. Biol , vol.54 , pp. 785-812
    • Goldstein, L.1    Waterman, M.S.2
  • 16
    • 0020484488 scopus 로고
    • An improved algorithm for matching biological sequences
    • Gotoh, O. (1982). An improved algorithm for matching biological sequences. Journal of Molecular Biology 162 705.
    • (1982) Journal of Molecular Biology , vol.162 , pp. 705
    • Gotoh, O.1
  • 17
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S. and Altschul, S. F. (1990). Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Nat Acad. Sci. U.S.A. 87 2264-2268.
    • (1990) Proc. Nat Acad. Sci. U.S.A , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 18
    • 0001159401 scopus 로고
    • Subadditive ergodic theory
    • Kingman, J. F. C. (1973). Subadditive ergodic theory. Ann. Probab. 1 883-909.
    • (1973) Ann. Probab , vol.1 , pp. 883-909
    • Kingman, J.F.C.1
  • 19
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman, D. J. and Pearson, W. R. (1985). Rapid and sensitive protein similarity searches. Science 227 1435.
    • (1985) Science , vol.227 , pp. 1435
    • Lipman, D.J.1    Pearson, W.R.2
  • 20
    • 0023723196 scopus 로고
    • Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences
    • McCaldon, P. and Argos, P. (1988). Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences. PROTEINS: Structure, Function, and Genetics 4 99.
    • (1988) PROTEINS: Structure, Function, and Genetics , vol.4 , pp. 99
    • McCaldon, P.1    Argos, P.2
  • 21
    • 0002064379 scopus 로고
    • Maximum likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarities
    • Mott, R. F. (1992). Maximum likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarities. Bull. Math. Biol. 54 59.
    • (1992) Bull. Math. Biol , vol.54 , pp. 59
    • Mott, R.F.1
  • 22
    • 21844500006 scopus 로고
    • A Poisson approximation for sequence comparisons with insertions and deletions
    • Neuhauser, C. (1994). A Poisson approximation for sequence comparisons with insertions and deletions. Ann. Statist 22. To appear.
    • (1994) Ann. Statist , pp. 22
    • Neuhauser, C.1
  • 23
    • 0025950944 scopus 로고
    • Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
    • Pearson, W. R. (1991). Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Genomics 11 635.
    • (1991) Genomics , vol.11 , pp. 635
    • Pearson, W.R.1
  • 24
    • 0024424270 scopus 로고
    • Riordan, J. R., Rommens, J. M., Kerem, B., Alon, N., et al. (1989). Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA. Science 245 1066.
    • (1989) Science , vol.245 , pp. 1066
    • Riordan, J.R.1    Rommens, J.M.2    Kerem, B.3    Alon, N.4
  • 25
    • 0022431785 scopus 로고
    • The statistical distribution of nucleic acid similarities
    • Smith, T. F., Burks, C. and Waterman, M. S. (1985). The statistical distribution of nucleic acid similarities. Nucleic Acids Research 13 645-656.
    • (1985) Nucleic Acids Research , vol.13 , pp. 645-656
    • Smith, T.F.1    Burks, C.2    Waterman, M.S.3
  • 26
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T. F. and Waterman, M. S. (1981). Identification of common molecular subsequences. Journal of Molecular Biology 147 195-197.
    • (1981) Journal of Molecular Biology , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 27
    • 0028047892 scopus 로고
    • Sequence alignment and penalty choice. Review of concepts, case studies and implications
    • Vingron, M. and Waterman, M. S. (1994). Sequence alignment and penalty choice. Review of concepts, case studies and implications. Journal of Molecular Biology 235 1-12.
    • (1994) Journal of Molecular Biology , vol.235 , pp. 1-12
    • Vingron, M.1    Waterman, M.S.2
  • 28
    • 0000329809 scopus 로고
    • General methods of sequence comparison
    • Waterman, M. S. (1984). General methods of sequence comparison. Bull. Math. Biol. 46 473-500.
    • (1984) Bull. Math. Biol , vol.46 , pp. 473-500
    • Waterman, M.S.1
  • 29
    • 0023661088 scopus 로고
    • A new algo rithm for best subsequence alignments with application to tRNA-rRNA comparisons
    • Waterman, M. S. and Eggert, M. (1987). A new algo rithm for best subsequence alignments with application to tRNA-rRNA comparisons. Journal of Molecular Biology 197 723-728.
    • (1987) Journal of Molecular Biology , vol.197 , pp. 723-728
    • Waterman, M.S.1    Eggert, M.2
  • 30
    • 0020714456 scopus 로고
    • Rapid similarity searches of nucleic acid and protein data banks
    • Wilbur, W. J. and Lipman, D. J. (1983). Rapid similarity searches of nucleic acid and protein data banks. Proc. Nat. Acad. Sci. U.S.A. 80 726.
    • (1983) Proc. Nat. Acad. Sci. U.S.A , vol.80 , pp. 726
    • Wilbur, W.J.1    Lipman, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.