-
1
-
-
84971334862
-
-
Genomic Standards Consortium (GSC) [Internet]. Available from: http://gensc.org
-
-
-
-
2
-
-
43449108562
-
The minimum information about a genome sequence (MIGS) specification
-
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, et al.: The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 2008,26(5):541-7. 10.1038/nbt1360
-
(2008)
Nat Biotechnol
, vol.26
, Issue.5
, pp. 541-547
-
-
Field, D.1
Garrity, G.2
Gray, T.3
Morrison, N.4
Selengut, J.5
Sterk, P.6
Tatusova, T.7
Thomson, N.8
Allen, M.J.9
Angiuoli, S.V.10
Ashburner, M.11
Axelrod, N.12
Baldauf, S.13
Ballard, S.14
Boore, J.15
Cochrane, G.16
Cole, J.17
Dawyndt, P.18
De Vos, P.19
DePamphilis, C.20
Edwards, R.21
Faruque, N.22
Feldman, R.23
Gilbert, J.24
Gilna, P.25
Glöckner, F.O.26
Goldstein, P.27
Guralnick, R.28
Haft, D.29
Hancock, D.30
more..
-
3
-
-
45749154807
-
A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML)
-
Kottmann R, Gray T, Murphy S, Kagan L, Kravitz S, Lombardot T, Field D, Glöckner FO, Genomic Standards Consortium: A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML). OMICS 2008,12(2):115-21. 10.1089/omi.2008.0A10
-
(2008)
OMICS
, vol.12
, Issue.2
, pp. 115-121
-
-
Kottmann, R.1
Gray, T.2
Murphy, S.3
Kagan, L.4
Kravitz, S.5
Lombardot, T.6
Field, D.7
Glöckner, F.O.8
-
4
-
-
79955749319
-
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
-
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, et al.: Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol 2011,29(5):415-20. 10.1038/nbt.1823
-
(2011)
Nat Biotechnol
, vol.29
, Issue.5
, pp. 415-420
-
-
Yilmaz, P.1
Kottmann, R.2
Field, D.3
Knight, R.4
Cole, J.R.5
Amaral-Zettler, L.6
Gilbert, J.A.7
Karsch-Mizrachi, I.8
Johnston, A.9
Cochrane, G.10
Vaughan, R.11
Hunter, C.12
Park, J.13
Morrison, N.14
Rocca-Serra, P.15
Sterk, P.16
Arumugam, M.17
Bailey, M.18
Baumgartner, L.19
Birren, B.W.20
Blaser, M.J.21
Bonazzi, V.22
Booth, T.23
Bork, P.24
Bushman, F.D.25
Buttigieg, P.L.26
Chain, P.S.27
Charlson, E.28
Costello, E.K.29
Huot-Creasy, H.30
more..
-
5
-
-
53549118607
-
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA: The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 2008, 19;9: 386.
-
(2008)
BMC Bioinformatics
, vol.19
, Issue.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
Kubal, M.6
Paczian, T.7
Rodriguez, A.8
Stevens, R.9
Wilke, A.10
Wilkening, J.11
Edwards, R.A.12
-
6
-
-
84859165788
-
The Genomes OnLine Database (GOLD) v. 4: status of genomic and metagenomic projects and their associated metadata
-
Pagani I, Liolios K, Jansson J, Chen IM, Smirnova T, Nosrat B, Markowitz VM, Kyrpides NC: The Genomes OnLine Database (GOLD) v. 4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2012,40(Database issue):D571-9.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.DATABASE ISSUE
, pp. D571-D579
-
-
Pagani, I.1
Liolios, K.2
Jansson, J.3
Chen, I.M.4
Smirnova, T.5
Nosrat, B.6
Markowitz, V.M.7
Kyrpides, N.C.8
-
7
-
-
84893161170
-
VAMPS: a website for visualization and analysis of microbial population structures
-
Huse SM, Mark Welch DB, Voorhis A, Shipunova A, Morrison HG, Eren AM, Sogin ML: VAMPS: a website for visualization and analysis of microbial population structures. BMC Bioinformatics 2014, 15: 41. 10.1186/1471-2105-15-41
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 41
-
-
Huse, S.M.1
Mark Welch, D.B.2
Voorhis, A.3
Shipunova, A.4
Morrison, H.G.5
Eren, A.M.6
Sogin, M.L.7
-
8
-
-
84862024797
-
IMG/M: the integrated metagenome data management and comparative analysis system
-
Markowitz VM, Chen IM, Chu K, Szeto E, Palaniappan K, Grechkin Y, Ratner A, Jacob B, Pati A, Huntemann M, Liolios K, Pagani I, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC: IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Res 2012,40(Database issue):D123-9.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.DATABASE ISSUE
, pp. D123-D129
-
-
Markowitz, V.M.1
Chen, I.M.2
Chu, K.3
Szeto, E.4
Palaniappan, K.5
Grechkin, Y.6
Ratner, A.7
Jacob, B.8
Pati, A.9
Huntemann, M.10
Liolios, K.11
Pagani, I.12
Anderson, I.13
Mavromatis, K.14
Ivanova, N.N.15
Kyrpides, N.C.16
-
9
-
-
78651266825
-
Community cyberinfrastructure for advanced microbial ecology research and analysis: the CAMERA resource
-
Sun S, Chen J, Li W, Altintas I, Lin A, Peltier S, Stocks K, Allen EE, Ellisman M, Grethe J, Wooley J: Community cyberinfrastructure for advanced microbial ecology research and analysis: the CAMERA resource. Nucleic Acids Res 2011,39(Database issue):D546-51.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISSUE
, pp. D546-D551
-
-
Sun, S.1
Chen, J.2
Li, W.3
Altintas, I.4
Lin, A.5
Peltier, S.6
Stocks, K.7
Allen, E.E.8
Ellisman, M.9
Grethe, J.10
Wooley, J.11
-
10
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R: QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010,7(5):335-6. 10.1038/nmeth.f.303
-
(2010)
Nat Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
11
-
-
77956548952
-
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level
-
Rocca-Serra P, Brandizi M, Maguire E, Sklyar N, Taylor C, Begley K, Field D, Harris S, Hide W, Hofmann O, Neumann S, Sterk P, Tong W, Sansone SA: ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinformatics 2010,15;26(18):2354-6.
-
(2010)
Bioinformatics
, vol.15
, Issue.26-18
, pp. 2354-2356
-
-
Rocca-Serra, P.1
Brandizi, M.2
Maguire, E.3
Sklyar, N.4
Taylor, C.5
Begley, K.6
Field, D.7
Harris, S.8
Hide, W.9
Hofmann, O.10
Neumann, S.11
Sterk, P.12
Tong, W.13
Sansone, S.A.14
-
12
-
-
84971312503
-
-
RightFielder Website
-
RightFielder Website [Internet]. Available from: http://www.melissadata.com/dm/mailing-software/rightfielder.htm
-
-
-
-
13
-
-
84971354711
-
-
Metazen user interface
-
Metazen user interface http://metagenomics.anl.gov/metazen.cgi
-
-
-
-
14
-
-
84971244894
-
-
BioPortal Bioontology Website
-
BioPortal Bioontology Website [Internet]. Available from: http://bioportal.bioontology.org/
-
-
-
-
15
-
-
84971261209
-
-
Public software repository for Metazen
-
Public software repository for Metazen https://github.com/MG-RAST/Metazen
-
-
-
|