-
1
-
-
14244272868
-
PHENIX: building new software for automated crystallographic structure determination
-
Adams, P.D., Grosse-Kunstleve, R.W., Hung, L.W., Ioerger, T.R., McCoy, A.J., Moriarty, N.W., Read, R.J., Sacchettini, J.C., Sauter, N.K., Terwilliger, T.C., PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr. D Biol. Crystallogr. 58 (2002), 1948–1954.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
2
-
-
84916599171
-
OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity
-
Ao, Y., Li, Z., Feng, D., Xiong, F., Liu, J., Li, J.F., Wang, M., Wang, J., Liu, B., Wang, H.B., OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity. Plant J. 80 (2014), 1072–1084.
-
(2014)
Plant J.
, vol.80
, pp. 1072-1084
-
-
Ao, Y.1
Li, Z.2
Feng, D.3
Xiong, F.4
Liu, J.5
Li, J.F.6
Wang, M.7
Wang, J.8
Liu, B.9
Wang, H.B.10
-
3
-
-
84957843317
-
SOBIR1 requires the GxxxG dimerization motif in its transmembrane domain to form constitutive complexes with receptor-like proteins
-
Bi, G., Liebrand, T.W., Bye, R.R., Postma, J., van der Burgh, A.M., Robatzek, S., Xu, X., Joosten, M.H., SOBIR1 requires the GxxxG dimerization motif in its transmembrane domain to form constitutive complexes with receptor-like proteins. Mol. Plant Pathol. 17 (2016), 96–107.
-
(2016)
Mol. Plant Pathol.
, vol.17
, pp. 96-107
-
-
Bi, G.1
Liebrand, T.W.2
Bye, R.R.3
Postma, J.4
van der Burgh, A.M.5
Robatzek, S.6
Xu, X.7
Joosten, M.H.8
-
4
-
-
84966391302
-
The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1
-
Cao, Y., Liang, Y., Tanaka, K., Nguyen, C.T., Jedrzejczak, R.P., Joachimiak, A., Stacey, G., The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1. Elife, 3, 2014, 10.7554/eLife.03766.
-
(2014)
Elife
, vol.3
-
-
Cao, Y.1
Liang, Y.2
Tanaka, K.3
Nguyen, C.T.4
Jedrzejczak, R.P.5
Joachimiak, A.6
Stacey, G.7
-
6
-
-
84881413993
-
Pivoting the plant immune system from dissection to deployment
-
Dangl, J.L., Horvath, D.M., Staskawicz, B.J., Pivoting the plant immune system from dissection to deployment. Science 341 (2013), 746–751.
-
(2013)
Science
, vol.341
, pp. 746-751
-
-
Dangl, J.L.1
Horvath, D.M.2
Staskawicz, B.J.3
-
7
-
-
77955867181
-
Conserved fungal LysM effector Ecp6 prevents chitin-triggered immunity in plants
-
de Jonge, R., van Esse, H.P., Kombrink, A., Shinya, T., Desaki, Y., Bours, R., van der Krol, S., Shibuya, N., Joosten, M.H., Thomma, B.P., Conserved fungal LysM effector Ecp6 prevents chitin-triggered immunity in plants. Science 329 (2010), 953–955.
-
(2010)
Science
, vol.329
, pp. 953-955
-
-
de Jonge, R.1
van Esse, H.P.2
Kombrink, A.3
Shinya, T.4
Desaki, Y.5
Bours, R.6
van der Krol, S.7
Shibuya, N.8
Joosten, M.H.9
Thomma, B.P.10
-
8
-
-
57349188569
-
PyMOL Molecular Viewer
-
DeLano, W.L., PyMOL Molecular Viewer. 2002 http://www.pymol.org.
-
(2002)
-
-
DeLano, W.L.1
-
9
-
-
77954763024
-
Plant immunity: towards an integrated view of plant-pathogen interactions
-
Dodds, P.N., Rathjen, J.P., Plant immunity: towards an integrated view of plant-pathogen interactions. Nat. Rev. Genet. 11 (2010), 539–548.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 539-548
-
-
Dodds, P.N.1
Rathjen, J.P.2
-
11
-
-
84878437050
-
LYM2-dependent chitin perception limits molecular flux via plasmodesmata
-
Faulkner, C., Petutschnig, E., Benitez-Alfonso, Y., Beck, M., Robatzek, S., Lipka, V., Maule, A.J., LYM2-dependent chitin perception limits molecular flux via plasmodesmata. Proc. Natl. Acad. Sci. USA 110 (2013), 9166–9170.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 9166-9170
-
-
Faulkner, C.1
Petutschnig, E.2
Benitez-Alfonso, Y.3
Beck, M.4
Robatzek, S.5
Lipka, V.6
Maule, A.J.7
-
12
-
-
77957965651
-
Protein-protein docking with binding site patch prediction and network-based terms enhanced combinatorial scoring
-
Gong, X.Q., Wang, P., Yang, F., Chang, S., Liu, B., He, H., Cao, L., Xu, X., Li, C., Chen, W., Wang, C., Protein-protein docking with binding site patch prediction and network-based terms enhanced combinatorial scoring. Proteins 78 (2010), 3150–3155.
-
(2010)
Proteins
, vol.78
, pp. 3150-3155
-
-
Gong, X.Q.1
Wang, P.2
Yang, F.3
Chang, S.4
Liu, B.5
He, H.6
Cao, L.7
Xu, X.8
Li, C.9
Chen, W.10
Wang, C.11
-
13
-
-
84904888683
-
Receptor like proteins associate with SOBIR1-type of adaptors to form bimolecular receptor kinases
-
Gust, A.A., Felix, G., Receptor like proteins associate with SOBIR1-type of adaptors to form bimolecular receptor kinases. Curr. Opin. Plant Biol. 21 (2014), 104–111.
-
(2014)
Curr. Opin. Plant Biol.
, vol.21
, pp. 104-111
-
-
Gust, A.A.1
Felix, G.2
-
14
-
-
84892922883
-
Chitin-induced activation of immune signaling by the rice receptor CEBiP relies on a unique sandwich-type dimerization
-
Hayafune, M., Berisio, R., Marchetti, R., Silipo, A., Kayama, M., Desaki, Y., Arima, S., Squeglia, F., Ruggiero, A., Tokuyasu, K., et al. Chitin-induced activation of immune signaling by the rice receptor CEBiP relies on a unique sandwich-type dimerization. Proc. Natl. Acad. Sci. USA 111 (2014), E404–E413.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. E404-E413
-
-
Hayafune, M.1
Berisio, R.2
Marchetti, R.3
Silipo, A.4
Kayama, M.5
Desaki, Y.6
Arima, S.7
Squeglia, F.8
Ruggiero, A.9
Tokuyasu, K.10
-
15
-
-
33746582708
-
Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor
-
Kaku, H., Nishizawa, Y., Ishii-Minami, N., Akimoto-Tomiyama, C., Dohmae, N., Takio, K., Minami, E., Shibuya, N., Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor. Proc. Natl. Acad. Sci. USA 103 (2006), 11086–11091.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 11086-11091
-
-
Kaku, H.1
Nishizawa, Y.2
Ishii-Minami, N.3
Akimoto-Tomiyama, C.4
Dohmae, N.5
Takio, K.6
Minami, E.7
Shibuya, N.8
-
16
-
-
84946225392
-
Structural insight into fungal cell wall recognition by a CVNH protein with a single LysM domain
-
Koharudin, L.M., Debiec, K.T., Gronenborn, A.M., Structural insight into fungal cell wall recognition by a CVNH protein with a single LysM domain. Structure 23 (2015), 2143–2154.
-
(2015)
Structure
, vol.23
, pp. 2143-2154
-
-
Koharudin, L.M.1
Debiec, K.T.2
Gronenborn, A.M.3
-
17
-
-
84906272045
-
Targeted gene disruption of OsCERK1 reveals its indispensable role in chitin perception and involvement in the peptidoglycan response and immunity in rice
-
Kouzai, Y., Mochizuki, S., Nakajima, K., Desaki, Y., Hayafune, M., Miyazaki, H., Yokotani, N., Ozawa, K., Minami, E., Kaku, H., et al. Targeted gene disruption of OsCERK1 reveals its indispensable role in chitin perception and involvement in the peptidoglycan response and immunity in rice. Mol. Plant Microbe Interact. 27 (2014), 975–982.
-
(2014)
Mol. Plant Microbe Interact.
, vol.27
, pp. 975-982
-
-
Kouzai, Y.1
Mochizuki, S.2
Nakajima, K.3
Desaki, Y.4
Hayafune, M.5
Miyazaki, H.6
Yokotani, N.7
Ozawa, K.8
Minami, E.9
Kaku, H.10
-
18
-
-
84893786939
-
CEBiP is the major chitin oligomer-binding protein in rice and plays a main role in the perception of chitin oligomers
-
Kouzai, Y., Nakajima, K., Hayafune, M., Ozawa, K., Kaku, H., Shibuya, N., Minami, E., Nishizawa, Y., CEBiP is the major chitin oligomer-binding protein in rice and plays a main role in the perception of chitin oligomers. Plant Mol. Biol. 84 (2014), 519–528.
-
(2014)
Plant Mol. Biol.
, vol.84
, pp. 519-528
-
-
Kouzai, Y.1
Nakajima, K.2
Hayafune, M.3
Ozawa, K.4
Kaku, H.5
Shibuya, N.6
Minami, E.7
Nishizawa, Y.8
-
19
-
-
77955419127
-
Chitin synthesis and fungal pathogenesis
-
Lenardon, M.D., Munro, C.A., Gow, N.A., Chitin synthesis and fungal pathogenesis. Curr. Opin. Microbiol. 13 (2010), 416–423.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 416-423
-
-
Lenardon, M.D.1
Munro, C.A.2
Gow, N.A.3
-
20
-
-
84866989809
-
Lysin motif-containing proteins LYP4 and LYP6 play dual roles in peptidoglycan and chitin perception in rice innate immunity
-
Liu, B., Li, J.F., Ao, Y., Qu, J., Li, Z., Su, J., Zhang, Y., Liu, J., Feng, D., Qi, K., et al. Lysin motif-containing proteins LYP4 and LYP6 play dual roles in peptidoglycan and chitin perception in rice innate immunity. Plant Cell 24 (2012), 3406–3419.
-
(2012)
Plant Cell
, vol.24
, pp. 3406-3419
-
-
Liu, B.1
Li, J.F.2
Ao, Y.3
Qu, J.4
Li, Z.5
Su, J.6
Zhang, Y.7
Liu, J.8
Feng, D.9
Qi, K.10
-
21
-
-
84861665941
-
Chitin-induced dimerization activates a plant immune receptor
-
Liu, T., Liu, Z., Song, C., Hu, Y., Han, Z., She, J., Fan, F., Wang, J., Jin, C., Chang, J., et al. Chitin-induced dimerization activates a plant immune receptor. Science 336 (2012), 1160–1164.
-
(2012)
Science
, vol.336
, pp. 1160-1164
-
-
Liu, T.1
Liu, Z.2
Song, C.3
Hu, Y.4
Han, Z.5
She, J.6
Fan, F.7
Wang, J.8
Jin, C.9
Chang, J.10
-
22
-
-
84905453864
-
Novel insights into rice innate immunity against bacterial and fungal pathogens
-
Liu, W., Liu, J., Triplett, L., Leach, J.E., Wang, G.L., Novel insights into rice innate immunity against bacterial and fungal pathogens. Annu. Rev. Phytopathol. 52 (2014), 213–241.
-
(2014)
Annu. Rev. Phytopathol.
, vol.52
, pp. 213-241
-
-
Liu, W.1
Liu, J.2
Triplett, L.3
Leach, J.E.4
Wang, G.L.5
-
23
-
-
84899149746
-
Plant PRRs and the activation of innate immune signaling
-
Macho, A.P., Zipfel, C., Plant PRRs and the activation of innate immune signaling. Mol. Cell 54 (2014), 263–272.
-
(2014)
Mol. Cell
, vol.54
, pp. 263-272
-
-
Macho, A.P.1
Zipfel, C.2
-
24
-
-
37649023555
-
CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis
-
Miya, A., Albert, P., Shinya, T., Desaki, Y., Ichimura, K., Shirasu, K., Narusaka, Y., Kawakami, N., Kaku, H., Shibuya, N., CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis. Proc. Natl. Acad. Sci. USA 104 (2007), 19613–19618.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 19613-19618
-
-
Miya, A.1
Albert, P.2
Shinya, T.3
Desaki, Y.4
Ichimura, K.5
Shirasu, K.6
Narusaka, Y.7
Kawakami, N.8
Kaku, H.9
Shibuya, N.10
-
25
-
-
84872317658
-
Sensing the environment: key roles of membrane-localized kinases in plant perception and response to abiotic stress
-
Osakabe, Y., Yamaguchi-Shinozaki, K., Shinozaki, K., Tran, L.S., Sensing the environment: key roles of membrane-localized kinases in plant perception and response to abiotic stress. J. Exp. Bot. 64 (2013), 445–458.
-
(2013)
J. Exp. Bot.
, vol.64
, pp. 445-458
-
-
Osakabe, Y.1
Yamaguchi-Shinozaki, K.2
Shinozaki, K.3
Tran, L.S.4
-
26
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., Minor, W., Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997), 307–326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
27
-
-
84875592758
-
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
-
Pronk, S., Páll, S., Schulz, R., Larsson, P., Bjelkmar, P., Apostolov, R., Shirts, M.R., Smith, J.C., Kasson, P.M., van der Spoel, D., et al. GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit. Bioinformatics 29 (2013), 845–854.
-
(2013)
Bioinformatics
, vol.29
, pp. 845-854
-
-
Pronk, S.1
Páll, S.2
Schulz, R.3
Larsson, P.4
Bjelkmar, P.5
Apostolov, R.6
Shirts, M.R.7
Smith, J.C.8
Kasson, P.M.9
van der Spoel, D.10
-
28
-
-
84881529325
-
Fungal effector Ecp6 outcompetes host immune receptor for chitin binding through intrachain LysM dimerization
-
Sanchez-Vallet, A., Saleem-Batcha, R., Kombrink, A., Hansen, G., Valkenburg, D.J., Thomma, B.P., Mesters, J.R., Fungal effector Ecp6 outcompetes host immune receptor for chitin binding through intrachain LysM dimerization. Elife, 2, 2013, e00790.
-
(2013)
Elife
, vol.2
, pp. e00790
-
-
Sanchez-Vallet, A.1
Saleem-Batcha, R.2
Kombrink, A.3
Hansen, G.4
Valkenburg, D.J.5
Thomma, B.P.6
Mesters, J.R.7
-
29
-
-
84863100609
-
Plant innate immunity: perception of conserved microbial signatures
-
Schwessinger, B., Ronald, P.C., Plant innate immunity: perception of conserved microbial signatures. Annu. Rev. Plant Biol. 63 (2012), 451–482.
-
(2012)
Annu. Rev. Plant Biol.
, vol.63
, pp. 451-482
-
-
Schwessinger, B.1
Ronald, P.C.2
-
30
-
-
37549039510
-
A short history of SHELX
-
Sheldrick, G.M., A short history of SHELX. Acta Crystallogr. A 64 (2008), 112–122.
-
(2008)
Acta Crystallogr. A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
31
-
-
78649609189
-
Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice
-
Shimizu, T., Nakano, T., Takamizawa, D., Desaki, Y., Ishii-Minami, N., Nishizawa, Y., Minami, E., Okada, K., Yamane, H., Kaku, H., Shibuya, N., Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice. Plant J. 64 (2010), 204–214.
-
(2010)
Plant J.
, vol.64
, pp. 204-214
-
-
Shimizu, T.1
Nakano, T.2
Takamizawa, D.3
Desaki, Y.4
Ishii-Minami, N.5
Nishizawa, Y.6
Minami, E.7
Okada, K.8
Yamane, H.9
Kaku, H.10
Shibuya, N.11
-
32
-
-
84867491576
-
Functional characterization of CEBiP and CERK1 homologs in arabidopsis and rice reveals the presence of different chitin receptor systems in plants
-
Shinya, T., Motoyama, N., Ikeda, A., Wada, M., Kamiya, K., Hayafune, M., Kaku, H., Shibuya, N., Functional characterization of CEBiP and CERK1 homologs in arabidopsis and rice reveals the presence of different chitin receptor systems in plants. Plant Cell Physiol. 53 (2012), 1696–1706.
-
(2012)
Plant Cell Physiol.
, vol.53
, pp. 1696-1706
-
-
Shinya, T.1
Motoyama, N.2
Ikeda, A.3
Wada, M.4
Kamiya, K.5
Hayafune, M.6
Kaku, H.7
Shibuya, N.8
-
33
-
-
84934960820
-
Chitin-mediated plant-fungal interactions: catching, hiding and handshaking
-
Shinya, T., Nakagawa, T., Kaku, H., Shibuya, N., Chitin-mediated plant-fungal interactions: catching, hiding and handshaking. Curr. Opin. Plant Biol. 26 (2015), 64–71.
-
(2015)
Curr. Opin. Plant Biol.
, vol.26
, pp. 64-71
-
-
Shinya, T.1
Nakagawa, T.2
Kaku, H.3
Shibuya, N.4
-
34
-
-
0032516658
-
Crystal structure of hemolin: a horseshoe shape with implications for homophilic adhesion
-
Su, X.D., Gastinel, L.N., Vaughn, D.E., Faye, I., Poon, P., Bjorkman, P.J., Crystal structure of hemolin: a horseshoe shape with implications for homophilic adhesion. Science 281 (1998), 991–995.
-
(1998)
Science
, vol.281
, pp. 991-995
-
-
Su, X.D.1
Gastinel, L.N.2
Vaughn, D.E.3
Faye, I.4
Poon, P.5
Bjorkman, P.J.6
-
35
-
-
45149090440
-
A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis
-
Wan, J., Zhang, X.C., Neece, D., Ramonell, K.M., Clough, S., Kim, S.Y., Stacey, M.G., Stacey, G., A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis. Plant Cell 20 (2008), 471–481.
-
(2008)
Plant Cell
, vol.20
, pp. 471-481
-
-
Wan, J.1
Zhang, X.C.2
Neece, D.3
Ramonell, K.M.4
Clough, S.5
Kim, S.Y.6
Stacey, M.G.7
Stacey, G.8
-
36
-
-
84865837379
-
LYK4, a lysin motif receptor-like kinase, is important for chitin signaling and plant innate immunity in Arabidopsis
-
Wan, J., Tanaka, K., Zhang, X.C., Son, G.H., Brechenmacher, L., Nguyen, T.H., Stacey, G., LYK4, a lysin motif receptor-like kinase, is important for chitin signaling and plant innate immunity in Arabidopsis. Plant Physiol. 160 (2012), 396–406.
-
(2012)
Plant Physiol.
, vol.160
, pp. 396-406
-
-
Wan, J.1
Tanaka, K.2
Zhang, X.C.3
Son, G.H.4
Brechenmacher, L.5
Nguyen, T.H.6
Stacey, G.7
-
37
-
-
83755195019
-
Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection
-
Willmann, R., Lajunen, H.M., Erbs, G., Newman, M.A., Kolb, D., Tsuda, K., Katagiri, F., Fliegmann, J., Bono, J.J., Cullimore, J.V., et al. Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection. Proc. Natl. Acad. Sci. USA 108 (2011), 19824–19829.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 19824-19829
-
-
Willmann, R.1
Lajunen, H.M.2
Erbs, G.3
Newman, M.A.4
Kolb, D.5
Tsuda, K.6
Katagiri, F.7
Fliegmann, J.8
Bono, J.J.9
Cullimore, J.V.10
-
38
-
-
84924813378
-
An intermolecular binding mechanism involving multiple LysM domains mediates carbohydrate recognition by an endopeptidase
-
Wong, J.E., Midtgaard, S.R., Gysel, K., Thygesen, M.B., Sorensen, K.K., Jensen, K.J., Stougaard, J., Thirup, S., Blaise, M., An intermolecular binding mechanism involving multiple LysM domains mediates carbohydrate recognition by an endopeptidase. Acta Crystallogr. D Biol. Crystallogr. 71 (2015), 592–605.
-
(2015)
Acta Crystallogr. D Biol. Crystallogr.
, vol.71
, pp. 592-605
-
-
Wong, J.E.1
Midtgaard, S.R.2
Gysel, K.3
Thygesen, M.B.4
Sorensen, K.K.5
Jensen, K.J.6
Stougaard, J.7
Thirup, S.8
Blaise, M.9
-
39
-
-
84920705583
-
The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling
-
Zhang, X., Dong, W., Sun, J., Feng, F., Deng, Y., He, Z., Oldroyd, G.E., Wang, E., The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling. Plant J. 81 (2015), 258–267.
-
(2015)
Plant J.
, vol.81
, pp. 258-267
-
-
Zhang, X.1
Dong, W.2
Sun, J.3
Feng, F.4
Deng, Y.5
He, Z.6
Oldroyd, G.E.7
Wang, E.8
|