-
1
-
-
77953652567
-
Information-theoretical analysis of gene expression data to infer transeriptional interactions
-
Baca-López, K., Hernández-Lemus, E., Mayorga M.; Information-theoretical analysis of gene expression data to infer transeriptional interactions. Revista Mexicana de Física, (en prensa) (2009).
-
(2009)
Revista Mexicana De Física
-
-
Baca-López, K.1
Hernández-Lemus, E.2
Mayorga, M.3
-
2
-
-
33750204290
-
Genetics of global gene expression
-
Rockmanm M. V., Kruglyak, L., Genetics of global gene expression, Nat. Rev. Genet. 7, 862-872, (2006).
-
(2006)
Nat. Rev. Genet
, vol.7
, pp. 862-872
-
-
Rockmanm, M.V.1
Kruglyak, L.2
-
3
-
-
33846097600
-
Dynamics of single-cell gene expression
-
Longo D., Hasty, J. Dynamics of single-cell gene expression, Molecular Systems Biology 2, 64, (2006) doi:10.1038/msb4100110.
-
(2006)
Molecular Systems Biology
, vol.2
, pp. 64
-
-
Longo, D.1
Hasty, J.2
-
4
-
-
25144450143
-
Contributions of low molecule number and. Chromosomal positioning to stochastic gene expression
-
Attila Becskei, A., Kaufmann, B.B., van Oudenaarden, A., Contributions of low molecule number and. chromosomal positioning to stochastic gene expression, Nature Genetics 37, 937-944 (2005).
-
(2005)
Nature Genetics
, vol.37
, pp. 937-944
-
-
Attila Becskei, A.1
Kaufmann, B.B.2
Van Oudenaarden, A.3
-
5
-
-
28944434119
-
Real-time kinetics of gene activity in individual bacteria
-
Golding, I; Paulsson, J; Zawilski, SM; Cox, EC (2005). Real-time kinetics of gene activity in individual bacteria, Cell 123 (6): 1025-36.
-
(2005)
Cell
, vol.123
, Issue.6
, pp. 1025-1036
-
-
Golding, I.1
Paulsson, J.2
Zawilski, S.M.3
Cox, E.C.4
-
6
-
-
33646591544
-
Transeriptional pulsing of a. Developmental gene
-
Chubb, JR; Trcek, T; Shenoy, SM; Singer, RH (2006). Transeriptional pulsing of a. developmental gene, Current biology 16 (10): 1018-25
-
(2006)
Current Biology
, vol.16
, Issue.10
, pp. 1018-1025
-
-
Chubb, J.R.1
Trcek, T.2
Shenoy, S.M.3
Singer, R.H.4
-
7
-
-
55449126379
-
Nonidentifiability of the Source of Intrinsic Noise in Gene Expression from Single-Burst Data
-
Ingram P.J., Stumpf, M.P.H, Stark, J. Nonidentifiability of the Source of Intrinsic Noise in Gene Expression from Single-Burst Data. PLoS Comput Biol 4(10): el000192, (2008).
-
(2008)
Plos Comput Biol
, vol.4
, Issue.10
-
-
Raj, A.1
Ingram, P.J.2
Stumpf, M.3
Stark, J.4
-
8
-
-
3042599437
-
Altered gene expression and increased bursting activity of colonie smooth muscle ATP-sensitive K+ channels in experimental colitis
-
Jin, X., Malykhina, A.P., Lupu, F. and Akbarali, H.I., Altered gene expression and increased bursting activity of colonie smooth muscle ATP-sensitive K+ channels in experimental colitis, Am J Physiol Gastrointest Liver Physiol 287: G274-G285, 2004.
-
(2004)
Am J Physiol Gastrointest Liver Physiol
, vol.287
-
-
Jin, X.1
Malykhina, A.P.2
Lupu, F.3
Akbarali, H.I.4
-
9
-
-
0036168102
-
PRL Gene Expression in Individual Living Mammotropes Displays Distinct Functional Pulses That Oscillate in a Noncircadian Temporal Pattern
-
Shorte, S.L., Leclerc, G.M., Vázquez-Martínez, R., Leaumont, D.C., Faught, W.J., Frawley, L.S. and Boockfor, F.R., PRL Gene Expression in Individual Living Mammotropes Displays Distinct Functional Pulses That Oscillate in a Noncircadian Temporal Pattern, Endocrinology Vol. 143, No. 3 1126-1133, 2002.
-
(2002)
Endocrinology
, vol.143
, Issue.3
, pp. 1126-1133
-
-
Shorte, S.L.1
Leclerc, G.M.2
Vázquez-Martínez, R.3
Leaumont, D.C.4
Faught, W.J.5
Frawley, L.S.6
Boockfor, F.R.7
-
10
-
-
34547418278
-
The Initiation and Propagation of Hes7 Oscillation Are Cooperatively Regulated by Fgf and Notch Signaling in the Somite Segmentation Clock
-
Niwa, Y., Masamizu, Y., Liu, T., Nakayama, R., Deng, C-X, and Kageyama, R., The Initiation and Propagation of Hes7 Oscillation Are Cooperatively Regulated by Fgf and Notch Signaling in the Somite Segmentation Clock, Developmental Cell 13, 298-304, August 2007.
-
(2007)
Developmental Cell
, vol.13
, pp. 298-304
-
-
Niwa, Y.1
Masamizu, Y.2
Liu Nakayama, T.R.3
Deng, C.-X.4
Kageyama, R.5
-
11
-
-
67650319009
-
Single-Molecule Approaches to Stochastic Gene Expression
-
Raj, A., van Oudenaarden, A., Single-Molecule Approach.es to Stochastic Gene Expression, Annual Review of Biophysics, June 2009. Vol. 38, Pages 255-270.
-
(2009)
Annual Review of Biophysics
, vol.38
, pp. 255-270
-
-
Raj, A.1
Van Oudenaarden, A.2
-
12
-
-
83055182538
-
Transeriptional bursts: A unified model of machines and mechanisms, 2008
-
Tripathi, T., Chowdhury, D., Transeriptional bursts: A unified model of machines and. mechanisms, 2008 Euro. Phys. Lett. 84 68004.
-
Euro. Phys. Lett
, vol.84
, pp. 68004
-
-
Tripathi, T.1
Chowdhury, D.2
-
13
-
-
34249683166
-
Effect of mRNA diffusion on stochastic bursts in gene transcription
-
Zhdanov, V., Effect of mRNA diffusion on stochastic bursts in gene transcription, JETP Letters, Volume 85, Number 6, May 2007, pp. 302-305.
-
(2007)
JETP Letters
, vol.85
, Issue.6
, pp. 302-305
-
-
Zhdanov, V.1
-
14
-
-
52949098296
-
Frcquency-modulated nuclear localization bursts coordínate gene régulation
-
(25 September,)
-
Cai, L., Dalal, C. K., Elowitz, M.B., Frcquency-modulated nuclear localization bursts coordínate gene régulation Nature 455, 485-490 (25 September 2008).
-
(2008)
Nature
, vol.455
, pp. 485-490
-
-
Cai, L.1
Dalal, C.K.2
Elowitz, M.B.3
-
15
-
-
37249034083
-
Coupling and coordination in gene expression processes: A systems biology view
-
Komili, S., Silver, S., Coupling and coordination in gene expression processes: a. systems biology view, Nat. Rev. Genet. 9, 38-48, (2008).
-
(2008)
Nat. Rev. Genet
, vol.9
, pp. 38-48
-
-
Komili, S.1
Silver, S.2
-
16
-
-
33947305781
-
ARACNe: An Algorithm for the Reconstruction of Gene Regulatory Networks in a. Mammalian Cellular Context
-
Margolin, A.A., Nemenman, I., Basso, K., Wiggins, C., Stolovitzky, G., Dalla Favera, R., Califano, A., ARACNe: An Algorithm for the Reconstruction of Gene Regulatory Networks in a. Mammalian Cellular Context, BMC Bioin-formatics, 7 (Suppl I):S7, (2006) doi:10.1186/1471-2105-7-Sl-S7.
-
(2006)
BMC Bioin-Formatics
, vol.7
-
-
Margolin, A.A.1
Nemenman, I.2
Basso, K.3
Wiggins, C.4
Stolovitzky, G.5
Dalla Favera, R.6
Califano, A.7
-
17
-
-
39149106448
-
Efficient siRNA selection using hybridization thermodynamics
-
Lu, Z.J., Matthews, D.H., Efficient siRNA selection using hybridization thermodynamics, Nucleic Acids Research, 36, 2, 640-647, (2008).
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.2
, pp. 640-647
-
-
Lu, Z.J.1
Matthews, D.H.2
-
18
-
-
0037388263
-
Absolute mRNA concentrations from. Scquence-specific calibration of oligonucleotide arrays
-
Hekstra, D., Taussig, A. R., Magnasco, M., Naef, F., Absolute mRNA concentrations from. scquence-specific calibration of oligonucleotide arrays, Nucleic Acids Research, 31, 7, 1962-1968, (2003).
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.7
, pp. 1962-1968
-
-
Hekstra, D.1
Taussig, A.R.2
Magnasco, M.3
Naef, F.4
-
19
-
-
84969671274
-
-
(see especially the section: products_ services/research_solutions/methods/wt_geneexpression_altsplicing.af£x also see for the Latin Square Data the section support/technical/sample_data/datasets.affx)
-
http://www.affymetrix.com/(see especially the section: products_ services/research_solutions/methods/wt_geneexpression_altsplicing.af£x also see for the Latin Square Data the section support/technical/sample_data/datasets.affx).
-
-
-
-
20
-
-
32544449970
-
Thermodynamics of RNA/DNA hybridization in high density oligonucleotide arrays
-
Carlon, E., Hein, T., Thermodynamics of RNA/DNA hybridization in high density oligonucleotide arrays, Physica A, 362, 433-449, (2006).
-
(2006)
Physica A
, vol.362
, pp. 433-449
-
-
Carlon, E.1
Hein, T.2
-
21
-
-
74549184314
-
Non-equilibrium thermodynamics of gene expression and transeriptional régulatio
-
(in press)
-
Hernández-Lemus, E., Non-equilibrium thermodynamics of gene expression and transeriptional régulation, Journal of Non-equilibrium Thermodynamics, (in press) (2009).
-
(2009)
Journal of Non-Equilibrium Thermodynamics
-
-
Hernández-Lemus, E.1
-
22
-
-
0037934649
-
Modeling of DNA microarray data by using physical properties of hybridization
-
Held, G. A., Grinstein, G., Tu, Y., Modeling of DNA microarray data by using physical properties of hybridization, PNAS, 100, 13. 7575-7580, (2003).
-
(2003)
PNAS
, vol.100
, Issue.13
, pp. 7575-7580
-
-
Held, G.A.1
Grinstein, G.2
Tu, Y.3
-
23
-
-
0032573182
-
Extension of the thermodynamics of small systems to open metastable states: An example
-
Hill, T.L., and Chamberlin, R.V., Extension of the thermodynamics of small systems to open metastable states: An example, Proc Natl Acad Sci. USA 95(22): 12779-12782, (1998).
-
(1998)
Proc Natl Acad Sci. USA
, vol.95
, Issue.22
, pp. 12779-12782
-
-
Hill, T.L.1
Chamberlin, R.V.2
-
26
-
-
33845658221
-
Non-equilibrium. Thermodynamics of small-s cale systems
-
Rub J.M., Non-equilibrium. thermodynamics of small-s cale systems, Energy, 32, 4, 297-300, (2007).
-
(2007)
Energy
, vol.32
, Issue.4
, pp. 297-300
-
-
Rub, J.M.1
-
27
-
-
74549114791
-
Mesoscopic Non-equilibrium. Thermodynamics, Atti dellAc-cademia Peloritana dei Pericolanti, Classes di Scienze Fisiche
-
C1S081020
-
Rubi, J.M., Mesoscopic Non-equilibrium. Thermodynamics, Atti dellAc-cademia Peloritana dei Pericolanti, Classes di Scienze Fisiche, Matematiche e Naturale, Vol. 86, C1S081020, Suppl. 1, (2008).
-
(2008)
Matematiche E Naturale
, vol.86
-
-
Rubi, J.M.1
-
28
-
-
34548274887
-
Unifying thermodynamic and kinetic descriptions of single molecule processes: RNA unfolding under tension
-
Rubi, J.M., Bedeaux, D., Kjelstrup, S., Unifying thermodynamic and kinetic descriptions of single molecule processes: RNA unfolding under tension, J. Phys. Chem. B., 111, 32,9598-9602, (2007).
-
(2007)
J. Phys. Chem. B
, vol.111
, Issue.32
, pp. 9598-9602
-
-
Rubi, J.M.1
Bedeaux, D.2
Kjelstrup, S.3
-
29
-
-
34447639828
-
The nonequilibrium thermodynamics of small systems
-
Ritort, F., The nonequilibrium thermodynamics of small systems, Comptes Rendus Physique, 8, 5-6, 528-539,(2007).
-
(2007)
Comptes Rendus Physique, 8, 5-6
, pp. 528-539
-
-
Ritort, F.1
-
30
-
-
0000806622
-
Fluctuation theorem for stochastic systems, Phys
-
D. J. Evans, D. J. Searles, Fluctuation theorem for stochastic systems, Phys. Rev. E 50, 1645 (1994).
-
(1994)
Rev. E
, vol.50
, pp. 1645
-
-
Evans, D.J.1
Searles, D.J.2
-
31
-
-
4244208748
-
Dynamical ensembles in nonequilibrium sta-tistical mechanics
-
G. Gallavotti, E. G. D. Cohen, Dynamical ensembles in nonequilibrium sta-tistical mechanics, Phys. Rev. Lett. 74, 2694 (1995).
-
(1995)
Phys. Rev. Lett
, vol.74
, pp. 2694
-
-
Gallavotti, G.1
Cohen, E.G.2
-
32
-
-
4243754128
-
Nonequilibrium equality for free energy différences, Phys
-
C. Jarzynski, Nonequilibrium equality for free energy différences, Phys. Rev. Lett. 78, 2690 (1997).
-
(1997)
Rev. Lett
, vol.78
, pp. 2690
-
-
Jarzynski, C.1
-
33
-
-
0032023968
-
Nonequilibrium measurements of free energy différences for microscopically reversible Markovian systems
-
G. E. Crooks, Nonequilibrium measurements of free energy différences for microscopically reversible Markovian systems, J. Stat. Phys. 90, 1481 (1998).
-
(1998)
J. Stat. Phys
, vol.90
, pp. 1481
-
-
Crooks, G.E.1
-
34
-
-
0003652415
-
-
Dover, N.York
-
de Groot, S.R., Mazur, P., Non-Equilibrium Thermodynamics, Dover, N.York, (1984).
-
(1984)
Non-Equilibrium Thermodynamics
-
-
De Groot, S.R.1
Mazur, P.2
-
35
-
-
84889780308
-
-
Springer-Verlag, N. York
-
Jou, D., Casas-Vázquez, J., Lebon, G., Extended Irreversible Thermodynamics, Springer-Verlag, N. York, (1998).
-
(1998)
Extended Irreversible Thermodynamics
-
-
Jou, D.1
Casas-Vázquez, J.2
Lebon, G.3
-
36
-
-
36149035290
-
Extended Irreversible Thermodynamics
-
Jou, D., Casas-Vázquez, J., Lebon, G., Extended Irreversible Thermodynamics, Rep. Prog. Phys. 51 1105-1179. (1988).
-
(1988)
Rep. Prog. Phys
, vol.51
, pp. 1105-1179
-
-
Jou, D.1
Casas-Vázquez, J.2
Lebon, G.3
-
37
-
-
0041551695
-
Generalized hydrodynamics and. Extended irreversible thermodynamics
-
Garcia-Colin, L.S., Rodríguez, R. F., López de Haro, M., Jou, D., Pérez Garcia, C.; Generalized hydrodynamics and. extended irreversible thermodynamics, Phys. Rev. A, 31, (1985), 2502-2508.
-
(1985)
Phys. Rev. A
, vol.31
, pp. 2502-2508
-
-
Garcia-Colin, L.S.1
Rodríguez, R.F.2
López De Haro, M.3
Jou, D.4
Pérez Garcia, C.5
-
38
-
-
21144484696
-
On the integrability of differential forms related to nonequilibrium entropy and irreversible thermodynamics
-
Chen, M.; Eu, B.C., On the integrability of differential forms related to nonequilibrium entropy and irreversible thermodynamics. J.Math. Phys. 34, (7), (1993), 3012-29.
-
(1993)
J.Math. Phys
, vol.34
, Issue.7
, pp. 3012-3029
-
-
Chen, M.1
Eu, B.C.2
-
39
-
-
33751533716
-
Non-equilibrium critical be-havior: An extended irreversible thermodynamics approach
-
Hernández-Lemus, E. and Garcia-Colin, L.S., Non-equilibrium critical be-havior: An extended irreversible thermodynamics approach, Journal of Nonequilibrium Thermodynamics, 31, 4, 397-417, (2006).
-
(2006)
Journal of Nonequilibrium Thermodynamics
, vol.31
, Issue.4
, pp. 397-417
-
-
Hernández-Lemus, E.1
Garcia-Colin, L.S.2
-
40
-
-
0028988329
-
Protein tyrosine kinase Syk is associated with and activated by the IL-2 receptor: Possible link with the c-myc induction path-way
-
Minami, Y., Nakagawa, Y., Kawahara, A., Miyazaki, T., Sada, K., Yanm-mura, H., Taniguchi, T., Protein tyrosine kinase Syk is associated with and activated by the IL-2 receptor: possible link with the c-myc induction path-way, Immunity. 2(1):89-100, (1995).
-
(1995)
Immunity
, vol.2
, Issue.1
, pp. 89-100
-
-
Minami, Y.1
Nakagawa, Y.2
Kawahara, A.3
Miyazaki, T.4
Sada, K.5
Yanm-Mura, H.6
Taniguchi, T.7
-
41
-
-
1042264109
-
Positive mediators of cell prolifération in neoplasic transformation
-
Coleman, W.B. and Tsongalis, Q.J. (eds.), Humana Press, New Jersey
-
Welch, J.N. and Chrysogelos, S.A., Positive mediators of cell prolifération in neoplasic transformation p.73 in Coleman, W.B. and Tsongalis, Q.J. (eds.), The molecular basis of human cancers, Humana Press, New Jersey, (2002).
-
(2002)
The Molecular Basis of Human Cancers
, pp. 73
-
-
Welch, J.N.1
Chrysogelos, S.A.2
-
42
-
-
0022524467
-
Expression of c-myc oncogene during differentiation of human burst-forming unit, erythroid (BFU-E)
-
Mar 13
-
Umemura T, Umene K, Nishimura J, Fukumaki Y, Sakaki Y, Ibayashi H., Expression of c-myc oncogene during differentiation of human burst-forming unit, erythroid (BFU-E), Biochem Biophys Res Commun. 1986 Mar 13; 135(2):521-6.
-
(1986)
Biochem Biophys Res Commun
, vol.135
, Issue.2
, pp. 521-526
-
-
Umemura, T.1
Umene, K.2
Nishimura, J.3
Fukumaki, Y.4
Sakaki, Y.5
Ibayashi, H.6
-
43
-
-
27644431540
-
Ras and Myc can drive oncogenic cell prolifération through individual D-cyclins
-
Yu, Q., Ciemerych, M. A., Sicinski, P., Ras and Myc can drive oncogenic cell prolifération through individual D-cyclins, Oncogene (2005) 24, 7114-7119.
-
(2005)
Oncogene
, vol.24
, pp. 7114-7119
-
-
Yu, Q.1
Ciemerych, M.A.2
Sicinski, P.3
-
44
-
-
33947418894
-
Gene Expression profiles in asbestos-exposed epithelial and mésothélial lung cell lines
-
NCBI Online data accession: GSE6013
-
Nvmark, P., Lindholm, P.M., Korpela, M.V., Lahti, L., Rousaari, S., Kaski S., Hollinen, J., Anttila, S., Kinnula, V.L., Knuutila, S., Gene Expression profiles in asbestos-exposed epithelial and mésothélial lung cell lines, BMC Genomics, 8, 62, (2007). NCBI Online data accession: GSE6013.
-
(2007)
BMC Genomics
, vol.8
, Issue.62
-
-
Nvmark, P.1
Lindholm, P.M.2
Korpela, M.V.3
Lahti, L.4
Rousaari, S.5
Kaski, S.6
Hollinen, J.7
Anttila, S.8
Kinnula, V.L.9
Knuutila, S.10
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