UTU: Disease Mention Recognition and Normalization with CRFs and Vector Space Representations

8th International Workshop on Semantic Evaluation, SemEval 2014 - co-located with the 25th International Conference on Computational Linguistics, COLING 2014, Proceedings

Volumn , Issue , 2014, Pages 807-811

  Kaewphan, Suwisa ^a,b   Hakaka, Kai ^a   Ginter, Filip ^a  

^a UNIVERSITY OF TURKU   (Finland)

^b TURKU CENTRE FOR COMPUTER SCIENCE   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL LINGUISTICS; MEDICAL COMPUTING; SEMANTICS; VECTOR SPACES;

COMPETITIVE PERFORMANCE; FEATURES SETS; NER SYSTEM; NORMALISATION; SUBTASK; SUPERVISED MACHINE LEARNING; VECTOR REPRESENTATIONS; VECTOR SPACE REPRESENTATION; WORD VECTORS;

SUPERVISED LEARNING;

EID: 84969305378     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (10)

1. David Campos, Sérgio Matos, and José Luís Oliveira. 2013. Gimli: open source and high-performance biomedical name recognition. BMC bioinformatics, 14(1):54.
2. Rezarta Islamaj Dogan, Robert Leaman, and Zhiyong Lu. 2014. NCBI disease corpus: a resource for disease name recognition and concept normalization. Journal of Biomedical Informatics, 47:1–10, Feb.
3. Robert Leaman, Rezarta Islamaj Dogan, and Zhiyong Lu. 2013a. DNorm: disease name normalization with pairwise learning to rank. Bioinformatics, 29(22):2909–2917.
4. Robert Leaman, Ritu Khare, and Zhiyong Lu. 2013b. NCBI at 2013 ShARe/CLEF eHealth Shared Task: Disorder normalization in clinical notes with DNorm. In Proceedings of the Conference and Labs of the Evaluation Forum.
5. Tomas Mikolov, Kai Chen, Greg Corrado, and Jeffrey Dean. 2013a. Efficient estimation of word representations in vector space. In ICLR Workshop.
6. Tomas Mikolov, Ilya Sutskever, Kai Chen, Gregory S. Corrado, and Jeffrey Dean. 2013b. Distributed representations of words and phrases and their compositionality. In NIPS, pages 3111–3119.
7. Tomas Mikolov, Wen tau Yih, and Geoffrey Zweig. 2013c. Linguistic regularities in continuous space word representations. In HLT-NAACL, pages 746–751.
8. Naoaki Okazaki. 2007. CRFsuite: a fast implementation of conditional random fields (CRFs). http://www.chokkan.org/software/crfsuite/.
9. Rune Sætre, Kazuhiro Yoshida, Akane Yakushiji, Yusuke Miyao, Y Matsubyashi, and Tomoko Ohta. 2007. AKANE system: protein-protein interaction pairs in BioCreAtIvE2 challenge, PPI-IPS subtask. In Proceedings of the BioCreative II, pages 209–212.
10. Sofie Van Landeghem, Jari Björne, Chih-Hsuan Wei, Kai Hakala, Sampo Pyysalo, Sophia Ananiadou, Hung-Yu Kao, Zhiyong Lu, Tapio Salakoski, Yves Van de Peer, and Filip Ginter. 2013. Large-scale event extraction from literature with multilevel gene normalization. PLoS ONE, 8(4):e55814.