-
1
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Béjà O, Aravind L, Koonin EV, Suzuki MT, Hadd A, et al. 2000. Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science 289(5486): 1902-1906.
-
(2000)
Science
, vol.289
, Issue.5486
, pp. 1902-1906
-
-
Béjà, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
-
2
-
-
0035859080
-
Proteorhodopsin phototrophy in the ocean
-
Béjà O, Spudich EN, Spudich JL, Leclerc M, DeLong EF. 2001. Proteorhodopsin phototrophy in the ocean. Nature 411(6839): 786-789.
-
(2001)
Nature
, vol.411
, Issue.6839
, pp. 786-789
-
-
Béjà, O.1
Spudich, E.N.2
Spudich, J.L.3
Leclerc, M.4
DeLong, E.F.5
-
3
-
-
74349084609
-
Use of isothermal microcalorimetery to monitor microbial activities
-
Braissant O, Wirz D, Göpfert B, Daniels AU. 2010. Use of isothermal microcalorimetery to monitor microbial activities. FEMS Microbiol. Lett 303: 1-8.
-
(2010)
FEMS Microbiol., Lett
, vol.303
, pp. 1-8
-
-
Braissant, O.1
Wirz, D.2
Göpfert, B.3
Daniels, A.U.4
-
5
-
-
3242780289
-
Energy quality, emergy, and transformity: H. T. Odum's contributions to quantifying and understanding systems
-
Brown MT, Ulgiati S. 2004. Energy quality, emergy, and transformity: H. T. Odum's contributions to quantifying and understanding systems. Ecol. Model 178(1-2): 201-213.
-
(2004)
Ecol. Model
, vol.178
, Issue.1-2
, pp. 201-213
-
-
Brown, M.T.1
Ulgiati, S.2
-
6
-
-
77951701764
-
The light-driven proton pump Proteorhodopsin enhances bacterial survival during tough times
-
DeLong EF, Béjà O. 2010. The light-driven proton pump Proteorhodopsin enhances bacterial survival during tough times. PLoS Biol 8(4): e1000359. doi:10.1371/journal.pbio.1000359.
-
(2010)
PLoS Biol
, vol.8
, Issue.4
, pp. e1000359
-
-
DeLong, E.F.1
Béjà, O.2
-
7
-
-
84869433160
-
Heat output by marine microbial and viral communities
-
Djamali E, Nulton JD, Turner PJ, Rohwer F, Salamon P. 2012. Heat output by marine microbial and viral communities. J. Non-Equilib. Thermodyn 37(3): 291-313.
-
(2012)
J. Non-Equilib. Thermodyn
, vol.37
, Issue.3
, pp. 291-313
-
-
Djamali, E.1
Nulton, J.D.2
Turner, P.J.3
Rohwer, F.4
Salamon, P.5
-
8
-
-
84872329316
-
What is the metabolic state of the oligotrophic ocean?
-
Ducklow HW, Doney SC. 2013. What is the metabolic state of the oligotrophic ocean? A debate. Ann. Rev. Mar. Sci 5: 525-53.
-
(2013)
A Debate. Ann. Rev. Mar. Sci
, vol.5
, pp. 525-553
-
-
Ducklow, H.W.1
Doney, S.C.2
-
9
-
-
32844465575
-
Proteorhodopsin laterial gene transfer between marine planktonic Bacteria and Archaea
-
Frigaard NU, Martinez A, Mincer TJ, DeLong EF. 2006. Proteorhodopsin laterial gene transfer between marine planktonic Bacteria and Archaea. Nature 439(7078): 847-850.
-
(2006)
Nature
, vol.439
, Issue.7078
, pp. 847-850
-
-
Frigaard, N.U.1
Martinez, A.2
Mincer, T.J.3
DeLong, E.F.4
-
10
-
-
33846238031
-
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria
-
Gómez-Consarnau L, González JM, Coll-Lladó M, Gourdon P, Pascher T, et al. 2007. Light stimulates growth of proteorhodopsin-containing marine Flavobacteria. Nature 445(7124): 210-213.
-
(2007)
Nature
, vol.445
, Issue.7124
, pp. 210-213
-
-
Gómez-Consarnau, L.1
González, J.M.2
Coll-Llado, M.3
Gourdon, P.4
Pascher, T.5
-
11
-
-
77951706049
-
Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation
-
Gómez-Consarnau L, Akram N, Lindell K, Pedersen A, Neutze R, et al. 2010. Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation. PLoS Biol 8(4): e1000358. doi:10.1371/journal.pbio.1000358.
-
(2010)
PLoS Biol
, vol.8
, Issue.4
, pp. e1000358
-
-
Gómez-Consarnau, L.1
Akram, N.2
Lindell, K.3
Pedersen, A.4
Neutze, R.5
-
12
-
-
0024901149
-
Primary production in the North Pacific gyre: A comparison of rates determined by the 14C, O2 concentration and 18O methods
-
Grande KD, Williams PJLeB, Marra J, Purdie DA, Heinemann K, et al. 1989. Primary production in the North Pacific gyre: A comparison of rates determined by the 14C, O2 concentration and 18O methods. Deep-Sea Res. Part A 36(11): 1621-1634.
-
(1989)
Deep-Sea Res. Part A
, vol.36
, Issue.11
, pp. 1621-1634
-
-
Grande, K.D.1
Williams, P.2
Marra, J.3
Purdie, D.A.4
Heinemann, K.5
-
13
-
-
79957601139
-
Warming up, turning sour, losing breath: Ocean biogeochemistry under global change
-
Gruber N. 2011. Warming up, turning sour, losing breath: ocean biogeochemistry under global change. Phil. Trans. Royal Soc. A - Math. Phys. Eng. Sci 369(1943): 1980-1996.
-
(2011)
Phil. Trans. Royal Soc. a - Math. Phys. Eng. Sci
, vol.369
, Issue.1943
, pp. 1980-1996
-
-
Gruber, N.1
-
14
-
-
84934466308
-
The measurement of adenosine triphosphate in the ocean and its ecological significance
-
Holm-Hansen O, Booth CR. 1966. The measurement of adenosine triphosphate in the ocean and its ecological significance. Limnol. Oceanogr 11(4): 510-519.
-
(1966)
Limnol. Oceanogr
, vol.11
, Issue.4
, pp. 510-519
-
-
Holm-Hansen, O.1
Booth, C.R.2
-
15
-
-
77954758453
-
Microbial production of recalcitrant dissolved organic matter: Long-Term carbon storage in the global ocean
-
Jiao N, Herndl GJ, Hansell DA, Benner R, Kattner G, et al. 2010. Microbial production of recalcitrant dissolved organic matter: long-Term carbon storage in the global ocean. Nature Rev. Microbiol 8(8): 593-598.
-
(2010)
Nature Rev. Microbiol
, vol.8
, Issue.8
, pp. 593-598
-
-
Jiao, N.1
Herndl, G.J.2
Hansell, D.A.3
Benner, R.4
Kattner, G.5
-
16
-
-
0006400088
-
Adenosine triphosphate (ATP) and total adenine nucleotide (TAN) pool turnover rates as measures of energy flux and specific growth rate in natural populations of microorganisms
-
Kemp PF, Sherr BF, Sherr EB, Cole JJ, eds., Boca Raton, Florida: Lewis Publishers
-
Karl DM. 1993. Adenosine triphosphate (ATP) and total adenine nucleotide (TAN) pool turnover rates as measures of energy flux and specific growth rate in natural populations of microorganisms, in Kemp PF, Sherr BF, Sherr EB, Cole JJ, eds., Current Methods in Aquatic Microbial Ecology. Boca Raton, Florida: Lewis Publishers: p. 483-494.
-
(1993)
Current Methods in Aquatic Microbial Ecology
, pp. 483-494
-
-
Karl, D.M.1
-
17
-
-
0037034311
-
Hidden in a sea of microbes
-
Karl DM. 2002. Hidden in a sea of microbes. Nature 415(6872): 590-591.
-
(2002)
Nature
, vol.415
, Issue.6872
, pp. 590-591
-
-
Karl, D.M.1
-
18
-
-
0021857923
-
Measurement and significance of ATP and adenine nucleotide pool turnover in microbial cells and environmental samples
-
Karl DM, Bossard P. 1985. Measurement and significance of ATP and adenine nucleotide pool turnover in microbial cells and environmental samples. J. Microbiol. Meth 3(3-4): 125-139.
-
(1985)
J. Microbiol. Meth
, vol.3
, Issue.3-4
, pp. 125-139
-
-
Karl, D.M.1
Bossard, P.2
-
19
-
-
0005129134
-
Sustained and aperiodic variability in organic matter production and phototrophic microbial community structure in the North Pacific Subtropical Gyre
-
Williams PJleB, Thomas DR, Reynolds CS, eds., London: Blackwell Publishers
-
Karl DM, Bidigare RR, Letelier RM. 2002. Sustained and aperiodic variability in organic matter production and phototrophic microbial community structure in the North Pacific Subtropical Gyre, in Williams PJleB, Thomas DR, Reynolds CS, eds., Phytoplankton Productivity and Carbon Assimilation in Marine and Freshwater Ecosystems. London: Blackwell Publishers: p. 222-264.
-
(2002)
Phytoplankton Productivity and Carbon Assimilation in Marine and Freshwater Ecosystems
, pp. 222-264
-
-
Karl, D.M.1
Bidigare, R.R.2
Letelier, R.M.3
-
20
-
-
80052964043
-
Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium
-
Kimura H, Young CR, Martinez A, DeLong EF. 2011. Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium. ISME J 5(10): 1641-1651.
-
(2011)
ISME J
, vol.5
, Issue.10
, pp. 1641-1651
-
-
Kimura, H.1
Young, C.R.2
Martinez, A.3
DeLong, E.F.4
-
21
-
-
84874712032
-
Bioenergetics of photoheterotrophic bacteria in the oceans
-
Kirchman DL, Hanson TE. 2013. Bioenergetics of photoheterotrophic bacteria in the oceans. Environ. Microbiol. Reports 5(2): 188-199.
-
(2013)
Environ. Microbiol. Reports
, vol.5
, Issue.2
, pp. 188-199
-
-
Kirchman, D.L.1
Hanson, T.E.2
-
22
-
-
16744362282
-
Isolation and characterization of Erythrobacter sp. Strains from the upper ocean
-
Koblížek M, Béjà O, Bidigare RR, Christensen S, Benitez-Nelson B, et al. 2003. Isolation and characterization of Erythrobacter sp. Strains from the upper ocean. Arch. Microbiol 180(5): 327-338.
-
(2003)
Arch. Microbiol
, vol.180
, Issue.5
, pp. 327-338
-
-
Koblížek, M.1
Béjà, O.2
Bidigare, R.R.3
Christensen, S.4
Benitez-Nelson, B.5
-
23
-
-
76749128448
-
On the photosynthetic properties of marine bacterium COL2P belonging to Roseobacter clade
-
Koblížek M, Mlčoušková J, Kolber Z, Kopecký J. 2010. On the photosynthetic properties of marine bacterium COL2P belonging to Roseobacter clade. Arch. Microbiol 192(1): 41-49.
-
(2010)
Arch. Microbiol
, vol.192
, Issue.1
, pp. 41-49
-
-
Koblížek, M.1
Mlčouškova, J.2
Kolber, Z.3
Kopecky, J.4
-
24
-
-
0034648788
-
Bacterial photosynthesis in surface waters of the open ocean
-
Kolber ZA, Van Dover CL, Niederman RA, Falkowski PG. 2000. Bacterial photosynthesis in surface waters of the open ocean. Nature 407(6801): 177-179.
-
(2000)
Nature
, vol.407
, Issue.6801
, pp. 177-179
-
-
Kolber, Z.A.1
Van Dover, C.L.2
Niederman, R.A.3
Falkowski, P.G.4
-
25
-
-
34548806804
-
Energy cycle in the ocean: Powering the microbial world
-
Kolber Z. 2007. Energy cycle in the ocean: Powering the microbial world. Oceanogr 20(2): 79-88.
-
(2007)
Oceanogr
, vol.20
, Issue.2
, pp. 79-88
-
-
Kolber, Z.1
-
26
-
-
0032487356
-
Measurements of variable chlorophyll fluorescence using fast repetition rate techniques: Defining methodology and experimental protocols
-
Kolber ZS, Prášil O, Falkowski PG. 1998. Measurements of variable chlorophyll fluorescence using fast repetition rate techniques: defining methodology and experimental protocols. Biochim. Biophys. Acta 1367(1-3): 88-106.
-
(1998)
Biochim. Biophys. Acta
, vol.1367
, Issue.1-3
, pp. 88-106
-
-
Kolber, Z.S.1
Prášil, O.2
Falkowski, P.G.3
-
27
-
-
0035967937
-
Contribution of aerobic photoheterotrophic bacteria to the carbon cycle of the ocean
-
Kolber ZA, Plumley FG, Lang AS, Beatty JT, Blankenship RE, et al. 2001. Contribution of aerobic photoheterotrophic bacteria to the carbon cycle of the ocean. Science 292(5526): 2492-2495.
-
(2001)
Science
, vol.292
, Issue.5526
, pp. 2492-2495
-
-
Kolber, Z.A.1
Plumley, F.G.2
Lang, A.S.3
Beatty, J.T.4
Blankenship, R.E.5
-
28
-
-
0002720053
-
Metabolic generation and utilization of phosphate bond energy
-
Lipmann F. 1941. Metabolic generation and utilization of phosphate bond energy. Adv. Enzymol 1: 99-162.
-
(1941)
Adv. Enzymol
, vol.1
, pp. 99-162
-
-
Lipmann, F.1
-
29
-
-
0000874614
-
Natural selection as a physical principle
-
Lotka AJ. 1922. Natural selection as a physical principle. Proc. Natl. Acad. Sci. USA 8(6): 151-154.
-
(1922)
Proc. Natl. Acad. Sci. USA
, vol.8
, Issue.6
, pp. 151-154
-
-
Lotka, A.J.1
-
30
-
-
0000094751
-
On certain unifying principles in ecology
-
Margalef R. 1963. On certain unifying principles in ecology. Amer. Naturalist 97(897): 357-374.
-
(1963)
Amer. Naturalist
, vol.97
, Issue.897
, pp. 357-374
-
-
Margalef, R.1
-
31
-
-
12444305227
-
Carbon status constrains light acclimation in the cyanobacterium Synechococcus elongatus
-
MacKenzie TDB, Burns RA, Campbell DA. 2004. Carbon status constrains light acclimation in the cyanobacterium Synechococcus elongatus. Plant Physiol 136(2): 3301-3312.
-
(2004)
Plant Physiol
, vol.136
, Issue.2
, pp. 3301-3312
-
-
MacKenzie, T.D.B.1
Burns, R.A.2
Campbell, D.A.3
-
32
-
-
0027836132
-
Ecology, thermodynamics and H. T. Odum's conjectures
-
Månsson BA, McGlade JM. 1993. Ecology, thermodynamics and H. T. Odum's conjectures. Oecologia 93(4): 582-596.
-
(1993)
Oecologia
, vol.93
, Issue.4
, pp. 582-596
-
-
Månsson, B.A.1
McGlade, J.M.2
-
33
-
-
84857134530
-
Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability
-
Marchetti A, Schruth DM, Durkin CA, Parker MS, Kodner RB, et al. 2012. Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability. Proc. Natl. Acad. Sci. USA 109(6): E317-E325.
-
(2012)
Proc. Natl. Acad. Sci., USA
, vol.109
, Issue.6
, pp. E317-E325
-
-
Marchetti, A.1
Schruth, D.M.2
Durkin, C.A.3
Parker, M.S.4
Kodner, R.B.5
-
34
-
-
34248151050
-
Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host
-
Martinez A, Bradley AS, Waldbauer JR, Summons RE, DeLong EF. 2007. Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host. Proc. Natl. Acad. Sci. USA 104(13): 5590-5595.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, Issue.13
, pp. 5590-5595
-
-
Martinez, A.1
Bradley, A.S.2
Waldbauer, J.R.3
Summons, R.E.4
DeLong, E.F.5
-
35
-
-
84942433521
-
Evolution of metabolism
-
Schlesinger WH, ed., Oxford, UK: Elsevier
-
Nealson KH, Rye R. 2003. Evolution of metabolism, in Schlesinger WH, ed., Biogeochemistry. Oxford, UK: Elsevier: p. 41-61.
-
(2003)
Biogeochemistry
, pp. 41-61
-
-
Nealson, K.H.1
Rye, R.2
-
36
-
-
84982382147
-
Primary production in flowing waters
-
Odum HT. 1956. Primary production in flowing waters. Limnol. Oceanogr 1(2): 102-117.
-
(1956)
Limnol. Oceanogr
, vol.1
, Issue.2
, pp. 102-117
-
-
Odum, H.T.1
-
37
-
-
0002907551
-
Energy flow in ecosystems: A historical review
-
Odum EP. 1968. Energy flow in ecosystems: A historical review. Am. Zoologist 8(1): 11-18.
-
(1968)
Am. Zoologist
, vol.8
, Issue.1
, pp. 11-18
-
-
Odum, E.P.1
-
39
-
-
0021092329
-
Maximum power and efficiency: A rebuttal
-
Odum HT. 1983b. Maximum power and efficiency: A rebuttal. Ecol. Model 20(1): 71-82.
-
(1983)
Ecol. Model
, vol.20
, Issue.1
, pp. 71-82
-
-
Odum, H.T.1
-
41
-
-
0000519433
-
Time's speed regulator: The optimum efficiency for maximum power output in physical and biological systems
-
Odum HT, Pinkerton RC. 1955. Time's speed regulator: The optimum efficiency for maximum power output in physical and biological systems. Amer. Scientist 43(2), 331-343.
-
(1955)
Amer. Scientist
, vol.43
, Issue.2
, pp. 331-343
-
-
Odum, H.T.1
Pinkerton, R.C.2
-
42
-
-
0000968512
-
The measurement of respiratory electron transport activity in marine plankton
-
Packard TT. 1971. The measurement of respiratory electron transport activity in marine plankton. J. Mar. Res 29: 235-244.
-
(1971)
J. Mar. Res
, vol.29
, pp. 235-244
-
-
Packard, T.T.1
-
43
-
-
0019896341
-
Heat production by sediment: Ecological significance
-
Pamatmat MM. 1982. Heat production by sediment: ecological significance. Science 215(4531): 395-397.
-
(1982)
Science
, vol.215
, Issue.4531
, pp. 395-397
-
-
Pamatmat, M.M.1
-
44
-
-
0037394431
-
Heat-flow measurements in aquatic ecosystems
-
Pamatmat MM. 2003. Heat-flow measurements in aquatic ecosystems. J. Plankton Res 25(4): 461-464.
-
(2003)
J. Plankton Res
, vol.25
, Issue.4
, pp. 461-464
-
-
Pamatmat, M.M.1
-
45
-
-
0000054351
-
Heat production, ATP concentration and electron transport activity of marine sediments
-
Pamatmat MM, Graf G, Bengtsson W, Novak CS. 1981. Heat production, ATP concentration and electron transport activity of marine sediments. Mar. Ecol. Prog. Ser 4: 135-143.
-
(1981)
Mar. Ecol. Prog. Ser
, vol.4
, pp. 135-143
-
-
Pamatmat, M.M.1
Graf, G.2
Bengtsson, W.3
Novak, C.S.4
-
46
-
-
34247221045
-
The role of ecological theory in microbial ecology
-
Prosser JI, Bohannan BJM, Curtis TP, Ellis RJ, Firestone MK, et al. 2007. The role of ecological theory in microbial ecology. Nature Rev. Micro 5(5): 384-392.
-
(2007)
Nature Rev., Micro
, vol.5
, Issue.5
, pp. 384-392
-
-
Prosser, J.I.1
Bohannan, B.J.M.2
Curtis, T.P.3
Ellis, R.J.4
Firestone, M.K.5
-
47
-
-
79953025594
-
What did Lotka really say? A critical reassessment of the "maximum power principle
-
Sciubba E. 2011. What did Lotka really say? A critical reassessment of the "maximum power principle". Ecol. Model 222(8): 1347-1353.
-
(2011)
Ecol. Model
, vol.222
, Issue.8
, pp. 1347-1353
-
-
Sciubba, E.1
-
48
-
-
0018674967
-
Distribution of aerobic bacteria which contain Bacteriochlorophyll A
-
Shiba T, Simidu U, Taga N. 1979. Distribution of aerobic bacteria which contain Bacteriochlorophyll a. Appl. Environ. Microbiol 38(1): 43-45.
-
(1979)
Appl. Environ. Microbiol
, vol.38
, Issue.1
, pp. 43-45
-
-
Shiba, T.1
Simidu, U.2
Taga, N.3
-
49
-
-
84880317067
-
A bacterial proteorhodopsin proton pump in marine eukaryotes
-
Slamovits CH, Okamoto N, Burri L, James ER, Keeling PJ. 2011. A bacterial proteorhodopsin proton pump in marine eukaryotes. Nature Comm 2(Article 183): doi:10.1038/ncomms1188.
-
(2011)
Nature Comm
, vol.2
-
-
Slamovits, C.H.1
Okamoto, N.2
Burri, L.3
James, E.R.4
Keeling, P.J.5
-
50
-
-
79955856835
-
Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration
-
Steindler L, Schwalbach MS, Smith DP, Chan F, Giovannoni SJ. 2011. Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration. PLoS One 6(5): e19725doi:10.1371/journal.pone.0019725.
-
(2011)
PLoS One
, vol.6
, Issue.5
, pp. e19725
-
-
Steindler, L.1
Schwalbach, M.S.2
Smith, D.P.3
Chan, F.4
Giovannoni, S.J.5
-
51
-
-
84862003743
-
Function and regulation of Vibrio campbellii proteorhodopsin: Acquired phototrophy in a classical organoheterotroph
-
Wang Z, O'Shaughnessy TJ, Soto CM, Rahbar AM, Robertson KL, et al. 2012. Function and regulation of Vibrio campbellii proteorhodopsin: Acquired phototrophy in a classical organoheterotroph. PLoS ONE 7(6): e38749.
-
(2012)
PLoS ONE
, vol.7
, Issue.6
, pp. e38749
-
-
Wang, Z.1
O'Shaughnessy, T.J.2
Soto, C.M.3
Rahbar, A.M.4
Robertson, K.L.5
|