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Volumn 17, Issue 1, 2016, Pages

SeqPurge: Highly-sensitive adapter trimming for paired-end NGS data

Author keywords

[No Author keywords available]

Indexed keywords

COSINE TRANSFORMS; ERRORS; TRIMMING;

EID: 84968912174     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-016-1069-7     Document Type: Article
Times cited : (109)

References (13)
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  • 2
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    • FLEXBAR - Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms
    • Dodt M, et al. FLEXBAR - Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms. Biology. 2012;1:895-905.
    • (2012) Biology , vol.1 , pp. 895-905
    • Dodt, M.1
  • 4
    • 84893443187 scopus 로고    scopus 로고
    • An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis
    • Giorgi FM, et al. An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis. PLoS ONE. 2013;8(12):e85024.
    • (2013) PLoS ONE , vol.8 , Issue.12 , pp. e85024
    • Giorgi, F.M.1
  • 5
    • 84903513963 scopus 로고    scopus 로고
    • Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
    • Jiang H, et al. Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads. BMC Bioinformatics. 2014;15:182.
    • (2014) BMC Bioinformatics , vol.15 , pp. 182
    • Jiang, H.1
  • 7
    • 84923918674 scopus 로고    scopus 로고
    • PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm
    • Li YL, et al. PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm. BMC Bioinformatics. 2015;16:S2.
    • (2015) BMC Bioinformatics , vol.16 , pp. S2
    • Li, Y.L.1
  • 8
    • 84863101693 scopus 로고    scopus 로고
    • AdapterRemoval: easy cleaning of next-generation sequencing reads
    • Lindgreen S. AdapterRemoval: easy cleaning of next-generation sequencing reads. BMC Res Notes. 2012;5:337.
    • (2012) BMC Res Notes , vol.5 , pp. 337
    • Lindgreen, S.1
  • 9
    • 79956307251 scopus 로고    scopus 로고
    • Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
    • Lunter G, et al. Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res. 2011;21:936-9.
    • (2011) Genome Res , vol.21 , pp. 936-939
    • Lunter, G.1
  • 10
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet journal. 2011;17:10-2.
    • (2011) EMBnet journal , vol.17 , pp. 10-12
    • Martin, M.1
  • 11
    • 84911383104 scopus 로고    scopus 로고
    • ABRA: improved coding indel detection via assembly-based realignment
    • Mose LE, et al. ABRA: improved coding indel detection via assembly-based realignment. Bioinformatics. 2014;30(19):2813-5.
    • (2014) Bioinformatics , vol.30 , Issue.19 , pp. 2813-2815
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    • Robinson JT, et al. Integrative Genomics Viewer. Nat Biotechnol. 2011;29:24-6.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.