Regional specializations of the PAZ proteomes derived from mouse hippocampus, olfactory bulb and cerebellum

Proteomes

Volumn 3, Issue 2, 2015, Pages 74-88

  Weingarten, Jens ^a   Laßek, Melanie ^a   Mueller, Benjamin F ^a   Rohmer, Marion ^a   Baeumlisberger, Dominic ^b   Beckert, Benedikt ^a   Ade, Jens ^a   Gogesch, Patricia ^c   Acker Palmer, Amparo ^a   Karas, Michael ^a   Volknandt, Walter ^a  

^a GOETHE UNIVERSITY   (Germany)

^b SunChrom Wissenschaftliche Geräte GmbH   (Germany)

^c PAUL EHRLICH INSTITUT   (Germany)

Author keywords

Cerebellum; Hippocampus; Olfactory bulb; Presynaptic active zone; Proteome

Indexed keywords

EID: 84964736512     PISSN: None     EISSN: 22277382     Source Type: Journal    
DOI: 10.3390/proteomes3020074     Document Type: Article

References (36)

1. Laßek, M.; Weingarten, J.; Volknandt, W. The proteome of the murine presynaptic active zone. Proteomes 2014, 2, 243-257
2. Lassek, M.; Weingarten, J.; Volknandt, W. The synaptic proteome. Cell Tissue Res. 2015, 359, 255-265
3. Distler, U.; Schmeisser, M.J.; Pelosi, A.; Reim, D.; Kuharev, J.; Weiczner, R.; Baumgart, J.; Boeckers, T.M.; Nitsch, R.; Vogt, J.; et al. In-depth protein profiling of the postsynaptic density from mouse hippocampus using data-independent acquisition proteomics. Proteomics 2014, 14, 2607-2613
4. Schwenk, J.; Baehrens, D.; Haupt, A.; Bildl, W.; Boudkkazi, S.; Roeper, J.; Fakler, B.; Schulte, U. Regional diversity and developmental dynamics of the ampa-receptor proteome in the mammalian brain. Neuron 2014, 84, 41-54
5. Weingarten, J.; Lassek, M.; Mueller, B.F.; Rohmer, M.; Lunger, I.; Baeumlisberger, D.; Dudek, S.; Gogesch, P.; Karas, M.; Volknandt, W. The proteome of the presynaptic active zone from mouse brain. Mol. Cell. Neurosci. 2014, 59C, 106-118
6. Morciano, M.; Beckhaus, T.; Karas, M.; Zimmermann, H.; Volknandt, W. The proteome of the presynaptic active zone: From docked synaptic vesicles to adhesion molecules and maxi-channels. J. Neurochem. 2009, 108, 662-675
7. Morciano, M.; Burre, J.; Corvey, C.; Karas, M.; Zimmermann, H.; Volknandt, W. Immunoisolation of two synaptic vesicle pools from synaptosomes: A proteomics analysis. J. Neurochem. 2005, 95, 1732-1745
8. Lassek, M.; Weingarten, J.; Einsfelder, U.; Brendel, P.; Muller, U.; Volknandt, W. Amyloid precursor proteins are constituents of the presynaptic active zone. J. Neurochem. 2013, 127, 48-56
9. Kazanis, I. The subependymal zone neurogenic niche: A beating heart in the centre of the brain: How plastic is adult neurogenesis? Opportunities for therapy and questions to be addressed. Brain J. Neurol. 2009, 132, 2909-2921
10. Lledo, P.M.; Lagier, S. Adjusting neurophysiological computations in the adult olfactory bulb. Semin. Cell Dev. Biol. 2006, 17, 443-453
11. Ming, G.L.; Song, H. Adult neurogenesis in the mammalian brain: Significant answers and significant questions. Neuron 2011, 70, 687-702
12. Van Praag, H.; Kempermann, G.; Gage, F.H. Running increases cell proliferation and neurogenesis in the adult mouse dentate gyrus. Nat. Neurosci. 1999, 2, 266-270
13. Zhao, C.; Deng, W.; Gage, F.H. Mechanisms and functional implications of adult neurogenesis. Cell 2008, 132, 645-660
14. Krakauer, J.W.; Shadmehr, R. Consolidation of motor memory. Trends Neurosci. 2006, 29, 58-64
15. Luft, A.R.; Buitrago, M.M. Stages of motor skill learning. Mol. Neurobiol. 2005, 32, 205-216
16. Whittaker, V.P. The structure and function of cholinergic synaptic vesicles. The third thudichum lecture. Biochem. Soc. Trans. 1984, 12, 561-576
17. Johnson, M.K. The intracellular distribution of glycolytic and other enzymes in rat-brain homogenates and mitochondrial preparations. Biochem. J. 1960, 77, 610-618
18. Laemmli, U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage t4. Nature 1970, 227, 680-685
19. Rohmer, M.; Baeumlisberger, D.; Karas, M. Advancing the analysis of less specific proteolytic digests via nLC-ESI-QoTOF-MS/MS. Int. J. Mass Spectrom. 2013, 345-347, 37-44
20. Perkins, D.N.; Pappin, D.J.; Creasy, D.M.; Cottrell, J.S. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567
21. Boyken, J.; Gronborg, M.; Riedel, D.; Urlaub, H.; Jahn, R.; Chua, J.J. Molecular profiling of synaptic vesicle docking sites reveals novel proteins but few differences between glutamatergic and gabaergic synapses. Neuron 2013, 78, 285-297
22. Margolis, F.L. A brain protein unique to the olfactory bulb. Proc. Natl. Acad. Sci. USA 1972, 69, 1221-1224
23. Graziadei, G.A.; Stanley, R.S.; Graziadei, P.P. The olfactory marker protein in the olfactory system of the mouse during development. Neuroscience 1980, 5, 1239-1252
24. Kasowski, H.J.; Kim, H.; Greer, C.A. Compartmental organization of the olfactory bulb glomerulus. J. Comp. Neurol. 1999, 407, 261-274
25. Lee, A.C.; He, J.; Ma, M. Olfactory marker protein is critical for functional maturation of olfactory sensory neurons and development of mother preference. J. Neurosci. 2011, 31, 2974-2982
26. Wang, H.; Nong, Y.; Bazan, F.; Greengard, P.; Flajolet, M. Norbin: A promising central nervous system regulator. Commun. Integr. Biol. 2010, 3, 487-490
27. Wang, H.; Westin, L.; Nong, Y.; Birnbaum, S.; Bendor, J.; Brismar, H.; Nestler, E.; Aperia, A.; Flajolet, M.; Greengard, P. Norbin is an endogenous regulator of metabotropic glutamate receptor 5 signaling. Science 2009, 326, 1554-1557
28. Shinozaki, K.; Kume, H.; Kuzume, H.; Obata, K.; Maruyama, K. Norbin, a neurite-outgrowthrelated protein, is a cytosolic protein localized in the somatodendritic region of neurons and distributed prominently in dendritic outgrowth in purkinje cells. Brain Res. Mol. Brain Res. 1999, 71, 364-368
29. Dateki, M.; Horii, T.; Kasuya, Y.; Mochizuki, R.; Nagao, Y.; Ishida, J.; Sugiyama, F.; Tanimoto, K.; Yagami, K.; Imai, H.; et al. Neurochondrin negatively regulates camkii phosphorylation, and nervous system-specific gene disruption results in epileptic seizure. J. Biol. Chem. 2005, 280, 20503-20508
30. Schwaller, B.; Meyer, M.; Schiffmann, S. 'New' functions for 'old' proteins: The role of the calcium-binding proteins calbindin d-28k, calretinin and parvalbumin, in cerebellar physiology. Studies with knockout mice. Cerebellum 2002, 1, 241-258
31. Enderlin, S.; Norman, A.W.; Celio, M.R. Ontogeny of the calcium binding protein calbindin d-28k in the rat nervous system. Anat. Embryol. 1987, 177, 15-28
32. Garcia-Segura, L.M.; Baetens, D.; Roth, J.; Norman, A.W.; Orci, L. Immunohistochemical mapping of calcium-binding protein immunoreactivity in the rat central nervous system. Brain Res. 1984, 296, 75-86
33. Iacopino, A.M.; Rhoten, W.B.; Christakos, S. Calcium binding protein (calbindin-d28k) gene expression in the developing and aging mouse cerebellum. Brain research. Mol. Brain Res. 1990, 8, 283-290
34. Baimbridge, K.G.; Miller, J.J.; Parkes, C.O. Calcium-binding protein distribution in the rat brain. Brain Res. 1982, 239, 519-525
35. Airaksinen, M.S.; Eilers, J.; Garaschuk, O.; Thoenen, H.; Konnerth, A.; Meyer, M. Ataxia and altered dendritic calcium signaling in mice carrying a targeted null mutation of the calbindin d28k gene. Proc. Natl. Acad. Sci. USA 1997, 94, 1488-1493
36. Barski, J.J.; Hartmann, J.; Rose, C.R.; Hoebeek, F.; Morl, K.; Noll-Hussong, M.; De Zeeuw, C.I.; Konnerth, A.; Meyer, M. Calbindin in cerebellar purkinje cells is a critical determinant of the precision of motor coordination. J. Neurosci. 2003, 23, 3469-3477