Shock: Active Storage for Multicloud Streaming Data Analysis

Proceedings - 2015 2nd IEEE/ACM International Symposium on Big Data Computing, BDC 2015

Volumn , Issue , 2016, Pages 68-72

  Bischof, Jared ^a,b   Wilke, Andreas ^a,b   Gerlach, Wolfgang ^a,b   Harrison, Travis ^a,b   Paczian, Tobias ^a,b   Tang, Wei ^c   Trimble, William ^a,b   Wilkening, Jared ^d   Desai, Narayan ^e   Meyer, Folker ^a,b  

^a ARGONNE NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF CHICAGO   (United States)

^c GOOGLE INC   (United States)

^d Dramafever   (United States)

^e ERICSSON RESEARCH   (United States)

Author keywords

active object store; bioinformatics; distributed wide area computing; metagenomics

Indexed keywords

BIOINFORMATICS; DATA COMPRESSION; DIGITAL STORAGE; METADATA; PIPELINE PROCESSING SYSTEMS; WEB SERVICES;

ACTIVE OBJECT; COMPUTATIONAL ANALYSIS; DATA COMPUTATION; DISTRIBUTED ENVIRONMENTS; DISTRIBUTED WIDE-AREA COMPUTING; HIGH THROUGHPUT; METAGENOMICS; PROCESSING STEPS;

BIG DATA;

EID: 84964381127     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BDC.2015.40     Document Type: Conference Paper

References (10)

1. Department of Energy, Office of Science, ASCR, "Storage systems and input/output to support extreme scale science: Report of the DOE workshops on storage systems and input/output, " in Report of the DOE workshops on storage systems and input/output. Rockville, Maryland. Dec 8-11, 2014, 2014.
2. T. Thomas, J. Gilbert, and F. Meyer, "Metagenomics-a guide from sampling to data analysis, " Microb Inform Exp, vol. 2, no. 3, pp. 1-12, 2012.
3. N. Desai, D. Antonopoulos, J. A. Gilbert, E. M. Glass, and F. Meyer, "From genomics to metagenomics, " Current opinion in biotechnology, vol. 23, no. 1, pp. 72-76, 2012.
4. F. Meyer, D. Paarmann, M. D'Souza, R. Olson, E. Glass, M. Kubal, T. Paczian, A. Rodriguez, R. Stevens, A. Wilke, J. Wilkening, and R. Edwards, "The metagenomics RAST server- a public resource for the automatic phylogenetic and functional analysis of metagenomes, " BMC Bioinformatics, vol. 9, no. 1, p. 386, 2008 http://www.biomedcentral.com/1471-2105/9/386
5. A. Wilke, J. Bischof, T. Harrison, B. Thomas, M. D'Souza, W. Gerlach, H. Matthews, T. Paczian, J. Wilkening, E. M. Glass, N. Desai, and F. Meyer, "A RESTful API for Accessing Microbial Community Data for MG-RAST, " PLoS Computational Biology, vol. 11, no. 1, 2015.
6. National Human Genome Research Institute (NHGRI), "DNA Sequencing Costs-Data from the NHGRI Genome Sequencing Program (GSP) , " http://www.genome.gov/sequencingcosts/, 2015, [Online; accessed 19- July-2015].
7. W. Tang, J. Wilkening, N. Desai, W. Gerlach, A. Wilke, and F. Meyer, "A scalable data analysis platform for metagenomics, " 2013 IEEE International Conference on Big Data, 2013.
8. Globus, "Research data management simplified, " http://www.globus.org, 2015, [Online; accessed 19-July-2015].
9. "The GO programming language, " http://www.golang.org, 2015, [Online; accessed 19-July-2015].
10. R. T. Fielding, "Architectural styles and the design of network-based software architectures, " Ph.D. dissertation, University of California, Irvine., 2000, [Chapter 5: Representational State Transfer (REST)].