-
1
-
-
33747063732
-
Thermodynamic properties of nonpolar solutes in water and the structure of hydrophobic hydration shells
-
Grunwald E. Thermodynamic properties of nonpolar solutes in water and the structure of hydrophobic hydration shells. J Am Chem Soc 1986;108:5726-5731.
-
(1986)
J Am Chem Soc
, vol.108
, pp. 5726-5731
-
-
Grunwald, E.1
-
2
-
-
0035296992
-
Isokinetic relationship, isoequilibrium relationship, and enthalpy-entropy compensation
-
Liu L, Guo Q-X. Isokinetic relationship, isoequilibrium relationship, and enthalpy-entropy compensation. Chem Rev 2001;101: 673-695.
-
(2001)
Chem Rev
, vol.101
, pp. 673-695
-
-
Liu, L.1
Guo, Q.-X.2
-
3
-
-
0842312362
-
Enthalpy/entropy compensation phenomena in the reduction thermodynamics of electron transport metalloproteins
-
Battistuzzi G, Borsari M, Di Rocco G, Ranieri A, Sola M. Enthalpy/entropy compensation phenomena in the reduction thermodynamics of electron transport metalloproteins. J Biol Inorg Chem 2004;9:23-26.
-
(2004)
J Biol Inorg Chem
, vol.9
, pp. 23-26
-
-
Battistuzzi, G.1
Borsari, M.2
Di Rocco, G.3
Ranieri, A.4
Sola, M.5
-
4
-
-
0024293340
-
Structure of azurin from Alcaligenes denitrificans refinement at 1.8 Å resolution and comparison of the two crystallographically independent molecules
-
Baker EN. Structure of azurin from Alcaligenes denitrificans refinement at 1.8 Å resolution and comparison of the two crystallographically independent molecules. J Mol Biol 1988;203:1071-1095.
-
(1988)
J Mol Biol
, vol.203
, pp. 1071-1095
-
-
Baker, E.N.1
-
5
-
-
0033613159
-
Backbone dynamics of azurin in solution: Slow conformational change associated with deprotonation of histidine 35
-
Kalverda AP, Ubbink M, Gilardi G, Wijmenga SS, Crawford A, Jeuken LJC, Canters GW. Backbone dynamics of azurin in solution: slow conformational change associated with deprotonation of histidine 35. Biochemistry 1999;38:12690-12697.
-
(1999)
Biochemistry
, vol.38
, pp. 12690-12697
-
-
Kalverda, A.P.1
Ubbink, M.2
Gilardi, G.3
Wijmenga, S.S.4
Crawford, A.5
Jeuken, L.J.C.6
Canters, G.W.7
-
6
-
-
0034090156
-
Structures of oxidized and reduced azurin II from Alcaligenes xylosoxidans at 1.75 Å resolution
-
Fraser ED, Zelda HLA, Robert RE, Hasnain SS. Structures of oxidized and reduced azurin II from Alcaligenes xylosoxidans at 1.75 Å resolution. Acta Crystallogr D 2000;56:690-696.
-
(2000)
Acta Crystallogr D
, vol.56
, pp. 690-696
-
-
Fraser, E.D.1
Zelda, H.L.A.2
Robert, R.E.3
Hasnain, S.S.4
-
7
-
-
0034129580
-
3D EXAFS refinement of the Cu site of azurin sheds light on the nature of structural change at the metal centre in an oxidation-reduction process: An integrated approach combining EXAFS and crystallography
-
Cheung KC, Strange RW, Hasnain SS. 3D EXAFS refinement of the Cu site of azurin sheds light on the nature of structural change at the metal centre in an oxidation-reduction process: an integrated approach combining EXAFS and crystallography. Acta Crystallogr D 2000;56:697-704.
-
(2000)
Acta Crystallogr D
, vol.56
, pp. 697-704
-
-
Cheung, K.C.1
Strange, R.W.2
Hasnain, S.S.3
-
8
-
-
0025953438
-
Crystal structure analysis of oxidized Pseudomonas aeruginosa azurin at pH 5.5 and pH 9.0. A pH-induced conformational transition involves a peptide bond flip
-
Nar H, Messerschmidt A, Huber R, van de Kamp M, Canters GW. Crystal structure analysis of oxidized Pseudomonas aeruginosa azurin at pH 5.5 and pH 9.0. A pH-induced conformational transition involves a peptide bond flip. J Mol Biol 1991;221:765-772.
-
(1991)
J Mol Biol
, vol.221
, pp. 765-772
-
-
Nar, H.1
Messerschmidt, A.2
Huber, R.3
Van De Kamp, M.4
Canters, G.W.5
-
9
-
-
0035849513
-
Enthalpic and entropic contributions to the mutational changes in the reduction potential of azurin
-
Battistuzzi G, Borsari M, Canters GW, de Waal E, Loschi L, Warmerdam G, Sola M. Enthalpic and entropic contributions to the mutational changes in the reduction potential of azurin. Biochemistry 2001;40:6707-6712.
-
(2001)
Biochemistry
, vol.40
, pp. 6707-6712
-
-
Battistuzzi, G.1
Borsari, M.2
Canters, G.W.3
De Waal, E.4
Loschi, L.5
Warmerdam, G.6
Sola, M.7
-
10
-
-
0043166970
-
Control of metalloprotein reduction potential: Compensation phenomena in the reduction thermodynamics of blue copper proteins
-
Battistuzzi G, Bellei M, Borsari M, Canters GW, de Waal E, Jeuken LJC, Ranieri A, Sola M. Control of metalloprotein reduction potential: compensation phenomena in the reduction thermodynamics of blue copper proteins. Biochemistry 2003;42:9214-9220.
-
(2003)
Biochemistry
, vol.42
, pp. 9214-9220
-
-
Battistuzzi, G.1
Bellei, M.2
Borsari, M.3
Canters, G.W.4
De Waal, E.5
Jeuken, L.J.C.6
Ranieri, A.7
Sola, M.8
-
11
-
-
0032758351
-
The influence of axial ligands on the reduction potential of blue copper proteins
-
Olsson MHM, Ryde U. The influence of axial ligands on the reduction potential of blue copper proteins. J Biol Inorg Chem 1999;4:654-663.
-
(1999)
J Biol Inorg Chem
, vol.4
, pp. 654-663
-
-
Olsson, M.H.M.1
Ryde, U.2
-
12
-
-
3042694367
-
Determinants of the relative reduction potentials of type-1 copper sites in proteins
-
Li H, Webb PS, Ivanic J, Jensen JH. Determinants of the relative reduction potentials of type-1 copper sites in proteins. J Am Chem Soc 2004;126:8010-8019.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 8010-8019
-
-
Li, H.1
Webb, P.S.2
Ivanic, J.3
Jensen, J.H.4
-
13
-
-
0037473550
-
Frozen density functional free energy simulations of redox proteins: Computational studies of the reduction potential of plastocyanin and rusticyanin
-
Olsson MHM, Hong GY, Warshel A. Frozen density functional free energy simulations of redox proteins: computational studies of the reduction potential of plastocyanin and rusticyanin. J Am Chem Soc 2003;125:5025-5039.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 5025-5039
-
-
Olsson, M.H.M.1
Hong, G.Y.2
Warshel, A.3
-
14
-
-
3042588009
-
Theoretical determination of the standard reduction potential of Plastocyanin in vitro
-
Datta SN, Sudhamsu J, Pandey A. Theoretical determination of the standard reduction potential of Plastocyanin in vitro. J Phys Chem 2004;108:8007-8016.
-
(2004)
J Phys Chem
, vol.108
, pp. 8007-8016
-
-
Datta, S.N.1
Sudhamsu, J.2
Pandey, A.3
-
15
-
-
21044435950
-
Calculation of the redox potential of the protein azurin and some mutants
-
van den Bosch M, Swart M, Snijders JG, Berendsen HJC, Mark AE, Oostenbrink C, van Gunsteren WF, Canters GW. Calculation of the redox potential of the protein azurin and some mutants. Chem Biol Chem 2005;6:738-746.
-
(2005)
Chem Biol Chem
, vol.6
, pp. 738-746
-
-
Van Den Bosch, M.1
Swart, M.2
Snijders, J.G.3
Berendsen, H.J.C.4
Mark, A.E.5
Oostenbrink, C.6
Van Gunsteren, W.F.7
Canters, G.W.8
-
16
-
-
0001489615
-
-
New York: Wiley
-
Kolczak U, Dennison C, Messerschmidt A, Canters G W. Handbook of metalloproteins, vol. 2. New York: Wiley; 2001. p 1170-1194
-
(2001)
Handbook of Metalloproteins
, vol.2
, pp. 1170-1194
-
-
Kolczak, U.1
Dennison, C.2
Messerschmidt, A.3
Canters, G.W.4
-
17
-
-
84962334836
-
-
PhD Thesis, University of Leiden, The Netherlands
-
Jeuken LJC. PhD Thesis, University of Leiden, The Netherlands; 2001.
-
(2001)
-
-
Jeuken, L.J.C.1
-
19
-
-
0033515394
-
A new ONIOM implementation in Gaussian98. Part I. The calculation of energies, gradients, vibrational frequencies and electric field derivatives
-
(b) Dapprich S, Komaromi I, Byun KS, Morokuma K, Frisch MJ. A new ONIOM implementation in Gaussian98. Part I. The calculation of energies, gradients, vibrational frequencies and electric field derivatives. Theochem 1999;461-462:1-21.
-
(1999)
Theochem
, vol.461-462
, pp. 1-21
-
-
Dapprich, S.1
Komaromi, I.2
Byun, K.S.3
Morokuma, K.4
Frisch, M.J.5
-
20
-
-
84961986752
-
New developments in the polarizable continuum model for quantum mechanical and classical calculations on molecules in solution
-
(a) Cossi M, Rega N, Scalmani G, Barone V New developments in the polarizable continuum model for quantum mechanical and classical calculations on molecules in solution. J Chem Phys 2002;117:43-54;
-
(2002)
J Chem Phys
, vol.117
, pp. 43-54
-
-
Cossi, M.1
Rega, N.2
Scalmani, G.3
Barone, V.4
-
21
-
-
84962349001
-
Energies, structures, and electronic properties of molecules in solution with the C-PCM solvation model
-
(b) Cossi M, Rega N, Scalmani G, Barone V. Energies, structures, and electronic properties of molecules in solution with the C-PCM solvation model. J Comput Chem 2003;24:669-681;
-
(2003)
J Comput Chem
, vol.24
, pp. 669-681
-
-
Cossi, M.1
Rega, N.2
Scalmani, G.3
Barone, V.4
-
22
-
-
84962428748
-
Achieving linear-scaling computational cost for the polarizable continuum model of solvation
-
(c) Scalmani G, Barone V, Kudin K, Pomelli C, Scuseria GE, Frisch MJ. Achieving linear-scaling computational cost for the polarizable continuum model of solvation. Theor Chem Acc 2004;111:90-100.
-
(2004)
Theor Chem Acc
, vol.111
, pp. 90-100
-
-
Scalmani, G.1
Barone, V.2
Kudin, K.3
Pomelli, C.4
Scuseria, G.E.5
Frisch, M.J.6
-
23
-
-
84946893847
-
Electrostatic interaction of a solute with a continuum. A direct utilization of ab initio molecular
-
(a) Miertus S, Scrocco E, Tomasi J. Electrostatic interaction of a solute with a continuum. A direct utilization of ab initio molecular. Chem Phys 1981;55:117;
-
(1981)
Chem Phys
, vol.55
, pp. 117
-
-
Miertus, S.1
Scrocco, E.2
Tomasi, J.3
-
24
-
-
11744256643
-
Molecular interactions in solution: An overview of methods based on continuous distributions of the solvent
-
(b) Tomasi J, Persico M. Molecular interactions in solution: an overview of methods based on continuous distributions of the solvent. Chem Rev 1994;94:2027-2094.
-
(1994)
Chem Rev
, vol.94
, pp. 2027-2094
-
-
Tomasi, J.1
Persico, M.2
-
25
-
-
84962383337
-
The ONIOM-PCM method: Combining the hybrid molecular orbital method and the polarizable continuum model for solvation. Application to the geometry and properties of a merocyanine in solution
-
Vreven T, Mennucci B, da Silva CO, Morokuma K, Tomasi J. The ONIOM-PCM method: combining the hybrid molecular orbital method and the polarizable continuum model for solvation. Application to the geometry and properties of a merocyanine in solution. J Chem Phys 2001;115:62-72.
-
(2001)
J Chem Phys
, vol.115
, pp. 62-72
-
-
Vreven, T.1
Mennucci, B.2
Da Silva, C.O.3
Morokuma, K.4
Tomasi, J.5
-
26
-
-
0025854571
-
X-ray crystal structure of the two site-specific mutants His35Gln and His35Leu of azurin from Pseudomonas aeruginosa
-
Nar H, Messerschmidt A, Huber R, van de Kamp M, Canters GW. X-ray crystal structure of the two site-specific mutants His35Gln and His35Leu of azurin from Pseudomonas aeruginosa. J Mol Biol 1991;218:427-447.
-
(1991)
J Mol Biol
, vol.218
, pp. 427-447
-
-
Nar, H.1
Messerschmidt, A.2
Huber, R.3
Van De Kamp, M.4
Canters, G.W.5
-
28
-
-
84961985856
-
Conformational behavior of macromolecules in solution by the polarizable continuum model in quantum mechanical and molecular mechanical frames. Homopolypeptides of a-aminoisobutyrric acid as test cases
-
Improta R, Rega N, Aleman C, Barone V. Conformational behavior of macromolecules in solution by the polarizable continuum model in quantum mechanical and molecular mechanical frames. Homopolypeptides of a-aminoisobutyrric acid as test cases, Macromolecules 2001;34:7550-7559.
-
(2001)
Macromolecules
, vol.34
, pp. 7550-7559
-
-
Improta, R.1
Rega, N.2
Aleman, C.3
Barone, V.4
-
30
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM Jr, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J Am Chem Soc 1995;117: 5179-5197.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
31
-
-
0025252558
-
Involvement of the hydrophobic patch of azurin in the electron-transfer reactions with cytochrome C551 and nitrite reductase
-
van de Kamp M, Silvestrini MC, Brunori M, Van Beeumen J, Hali FC, Canters GW. Involvement of the hydrophobic patch of azurin in the electron-transfer reactions with cytochrome C551 and nitrite reductase. Eur J Biochem 1990;194:109-118.
-
(1990)
Eur J Biochem
, vol.194
, pp. 109-118
-
-
Van De Kamp, M.1
Silvestrini, M.C.2
Brunori, M.3
Van Beeumen, J.4
Hali, F.C.5
Canters, G.W.6
-
32
-
-
0033841688
-
Blue copper proteins: A comparative analysis of their molecular interaction properties
-
De Rienzo F, Gabdoulline RR, Menziani MC, Wade RC. Blue copper proteins: a comparative analysis of their molecular interaction properties. Protein Sci 2000;9:1439-1454.
-
(2000)
Protein Sci
, vol.9
, pp. 1439-1454
-
-
De Rienzo, F.1
Gabdoulline, R.R.2
Menziani, M.C.3
Wade, R.C.4
-
33
-
-
0027521583
-
Effect of lysine ionization on the structure and electrochemical behaviour of the Met44-Lys mutant of the blue-copper protein azurin from Pseudomonas aeruginosa
-
Van de Kamp M, Canters GW, Andrew CR, Sanders-Loehr J, Bender CJ, Peisach J. Effect of lysine ionization on the structure and electrochemical behaviour of the Met44-Lys mutant of the blue-copper protein azurin from Pseudomonas aeruginosa. Eur J Biochem 1993;218:229-238.
-
(1993)
Eur J Biochem
, vol.218
, pp. 229-238
-
-
Van De Kamp, M.1
Canters, G.W.2
Andrew, C.R.3
Sanders-Loehr, J.4
Bender, C.J.5
Peisach, J.6
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