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Volumn 17, Issue 1, 2016, Pages

The systems biology format converter

Author keywords

Converter; Format; SBML; Systems biology

Indexed keywords

BIOLOGY; COMPUTER SOFTWARE; MATLAB; WEB SERVICES; WEBSITES;

EID: 84962044993     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-016-1000-2     Document Type: Article
Times cited : (27)

References (22)
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    • Quantitative and logic modelling of gene and molecular networks
    • Le Novère N. Quantitative and logic modelling of gene and molecular networks. Nat Rev Genet. 2015; 16:146.
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  • 2
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    • Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative
    • Hucka M, Nickerson DP, Bader G, Bergmann FT, Cooper J, Demir E, et al. Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative. Front Bioeng Biotechnol. 2015; 3:19.
    • (2015) Front Bioeng Biotechnol , vol.3 , pp. 19
    • Hucka, M.1    Nickerson, D.P.2    Bader, G.3    Bergmann, F.T.4    Cooper, J.5    Demir, E.6
  • 3
    • 84862156032 scopus 로고    scopus 로고
    • Identifiers.org and MIRIAM Registry: community resources to provide persistent identification
    • Juty N, Le Novére N, Laibe C. Identifiers.org and MIRIAM Registry: community resources to provide persistent identification. Nucleic Acids Res. 2012; 40(D1):D580-D586.
    • (2012) Nucleic Acids Res , vol.40 , Issue.D1 , pp. D580-D586
    • Juty, N.1    Le Novére, N.2    Laibe, C.3
  • 4
    • 0037342537 scopus 로고    scopus 로고
    • The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
    • Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics. 2003; 19(4):524-31.
    • (2003) Bioinformatics , vol.19 , Issue.4 , pp. 524-531
    • Hucka, M.1    Finney, A.2    Sauro, H.M.3    Bolouri, H.4    Doyle, J.C.5    Kitano, H.6
  • 10
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    • An open graph visualization system and its applications to software engineering
    • Gansner ER, North SC. An open graph visualization system and its applications to software engineering. Softw - Pract Exp. 2000; 30(11):1203-233.
    • (2000) Softw - Pract Exp , vol.30 , Issue.11 , pp. 1203-1233
    • Gansner, E.R.1    North, S.C.2
  • 13
    • 85057660342 scopus 로고    scopus 로고
    • Monte Carlo methods for simulating realistic synaptic microphysiology using MCell
    • Stiles JR, Bartol TM, et al. Monte Carlo methods for simulating realistic synaptic microphysiology using MCell. Comput Neurosci Real Model Exper. 2001;87-127.
    • (2001) Comput Neurosci Real Model Exper , pp. 87-127
    • Stiles, J.R.1    Bartol, T.M.2
  • 16
    • 0003945142 scopus 로고    scopus 로고
    • Simulating, Analyzing, and Animating Dynamical Systems: A Guide to XPPAUT for Researchers and Students
    • Software E, Tools, editors
    • Ermentrout B. Simulating, Analyzing, and Animating Dynamical Systems: A Guide to XPPAUT for Researchers and Students. Software E, Tools, editors. Software, Environments and Tools. Society for Industrial and Applied Mathematics. 2002. http://dx.doi.org/10.1137/1.9780898718195.
    • (2002) Software, Environments and Tools. Society for Industrial and Applied Mathematics
    • Ermentrout, B.1
  • 17
    • 33644877164 scopus 로고    scopus 로고
    • BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
    • Le Novère N, Bornstein B, Broicher A, Courtot M, Donizelli M, Dharuri H, et al. BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res. 2006; 34(Database issue):D689-91.
    • (2006) Nucleic Acids Res , vol.34 , Issue.Database issue , pp. D689-D691
    • Le Novère, N.1    Bornstein, B.2    Broicher, A.3    Courtot, M.4    Donizelli, M.5    Dharuri, H.6
  • 19
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    • [cited 14 March 2016].
    • Systems Biology Format Converter (SBFC) online. Available from: http://www.ebi.ac.uk/biomodels/tools/converters/ [cited 14 March 2016].
  • 20
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  • 22
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    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
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    • (2003) Genome Res , vol.13 , Issue.11 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.