-
1
-
-
25444530343
-
CoPub mapper: Mining medline based on search term co-publication
-
B. T. Alako, A. Veldhoven, S. van Baal, R. Jelier, S. Verhoeven, T. Rullmann, J. Polman, and G. Jenster, "CoPub mapper: Mining medline based on search term co-publication," BMC Bioinformatics, vol. 6, p. 51, 2005.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 51
-
-
Alako, B.T.1
Veldhoven, A.2
Van Baal, S.3
Jelier, R.4
Verhoeven, S.5
Rullmann, T.6
Polman, J.7
Jenster, G.8
-
2
-
-
78049427383
-
Literature mining for the discovery of hidden connections between drugs, genes and diseases
-
R. Frijters, M. van Vugt, R. Smeets, R. van Schaik, J. de Vlieg, and W. Alkema, "Literature mining for the discovery of hidden connections between drugs, genes and diseases," PLoS Comput. Biol., vol. 6, no. 9, 2010.
-
(2010)
PLoS Comput. Biol.
, vol.6
, Issue.9
-
-
Frijters, R.1
Van Vugt, M.2
Smeets, R.3
Van Schaik, R.4
De Vlieg, J.5
Alkema, W.6
-
3
-
-
77949466921
-
MspecLINE: Bridging knowledge of human disease with the proteome
-
J. Handcock, E. W. Deutsch, and J. Boyle, "mspecLINE: Bridging knowledge of human disease with the proteome," BMC Med. Genomics, vol. 3, p. 7, 2010.
-
(2010)
BMC Med. Genomics
, vol.3
, pp. 7
-
-
Handcock, J.1
Deutsch, E.W.2
Boyle, J.3
-
4
-
-
13244268327
-
Extending the mutual information measure to rank inferred literature relationships
-
Oct. 7
-
J. D. Wren, "Extending the mutual information measure to rank inferred literature relationships," BMC Bioinformatics, vol. 5, p. 145, Oct. 7, 2004.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 145
-
-
Wren, J.D.1
-
5
-
-
48449105128
-
CoPub: A literature-based keyword enrichment tool for microarray data analysis
-
Jul. 1
-
R. Frijters, B. Heupers, P. van Beek, M. Bouwhuis, R. van Schaik, J. de Vlieg, J. Polman, and W. Alkema, "CoPub: A literature-based keyword enrichment tool for microarray data analysis," Nucleic Acids Res., vol. 36, pp. W406-10, Jul. 1, 2008.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W406-W410
-
-
Frijters, R.1
Heupers, B.2
Van Beek, P.3
Bouwhuis, M.4
Van Schaik, R.5
De Vlieg, J.6
Polman, J.7
Alkema, W.8
-
6
-
-
33847710337
-
The google similarity distance
-
Jan.
-
R. L. Cilibrasi and P. M. Vitanyi, "The google similarity distance," IEEE Trans. Knowl. Data Eng, vol. 19, no. 3, pp. 370-383, Jan. 2007.
-
(2007)
IEEE Trans. Knowl. Data Eng
, vol.19
, Issue.3
, pp. 370-383
-
-
Cilibrasi, R.L.1
Vitanyi, P.M.2
-
7
-
-
84963788609
-
A mathematical theory of communication
-
C. E. Shannon, "A mathematical theory of communication," ACM SIGMOBILE Mobile Comput. Commun. Rev., vol. 5, no. 1, pp. 3-55, 2001.
-
(2001)
ACM SIGMOBILE Mobile Comput. Commun. Rev.
, vol.5
, Issue.1
, pp. 3-55
-
-
Shannon, C.E.1
-
8
-
-
0032211335
-
Using ARROWSMITH: A computer-assisted approach to formulating and assessing scientific hypotheses
-
N. R. Smalheiser and D. R. Swanson, "Using ARROWSMITH: a computer-assisted approach to formulating and assessing scientific hypotheses," Comput. Methods Programs Biomed., vol. 57, no. 3, pp. 149-153, 1998.
-
(1998)
Comput. Methods Programs Biomed.
, vol.57
, Issue.3
, pp. 149-153
-
-
Smalheiser, N.R.1
Swanson, D.R.2
-
9
-
-
84900861593
-
Biological network extraction from scientific literature: State of the art and challenges
-
Feb. 22
-
C. Li, M. Liakata, and D. Rebholz-Schuhmann, "Biological network extraction from scientific literature: State of the art and challenges," Brief Bioinform, vol. 15, pp. 856-877, Feb. 22, 2013.
-
(2013)
Brief Bioinform
, vol.15
, pp. 856-877
-
-
Li, C.1
Liakata, M.2
Rebholz-Schuhmann, D.3
-
10
-
-
84882647236
-
Towards building a disease-phenotype knowledge base: Extracting disease-manifestation relationship from literature
-
Sep. 1
-
R. Xu, L. Li, and Q. Wang, "Towards building a disease-phenotype knowledge base: extracting disease-manifestation relationship from literature," Bioinformatics, vol. 29, no. 17, pp. 2186-2194, Sep. 1, 2013.
-
(2013)
Bioinformatics
, vol.29
, Issue.17
, pp. 2186-2194
-
-
Xu, R.1
Li, L.2
Wang, Q.3
-
11
-
-
0028230073
-
Understanding and using the medical subject headings (MeSH) vocabulary to perform literature searches
-
H. J. Lowe and G. O. Barnett, "Understanding and using the medical subject headings (MeSH) vocabulary to perform literature searches," J. Am. Med. Association, vol. 271, no. 14, pp. 1103-1108, 1994.
-
(1994)
J. Am. Med. Association
, vol.271
, Issue.14
, pp. 1103-1108
-
-
Lowe, H.J.1
Barnett, G.O.2
-
12
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The gene ontology consortium
-
May
-
M. Ashburner, C. A. Ball, J. A. Blake, D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris,D. P.Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J. C.Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, and G. Sherlock, "Gene ontology: Tool for the unification of biology. the gene ontology consortium," Nat. Genet., vol. 25, no. 1, pp. 25-29,May 2000.
-
(2000)
Nat. Genet.
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
13
-
-
22044433259
-
Relations in biomedical ontologies
-
B. Smith, W. Ceusters, B. Klagges, J. Kohler, A. Kumar, J. Lomax, C. Mungall, F. Neuhaus, A. L. Rector, and C. Rosse, "Relations in biomedical ontologies," Genome Biol., vol. 6, no. 5, p. R46, 2005.
-
(2005)
Genome Biol.
, vol.6
, Issue.5
, pp. R46
-
-
Smith, B.1
Ceusters, W.2
Klagges, B.3
Kohler, J.4
Kumar, A.5
Lomax, J.6
Mungall, C.7
Neuhaus, F.8
Rector, A.L.9
Rosse, C.10
-
14
-
-
84878328074
-
Measuring gene functional similarity based on group-wise comparison of GO terms
-
Jun. 1
-
Z. Teng, M. Guo, X. Liu, Q. Dai, C. Wang, and P. Xuan, "Measuring gene functional similarity based on group-wise comparison of GO terms," Bioinformatics, vol. 29, no. 11, pp. 1424-1432, Jun. 1, 2013.
-
(2013)
Bioinformatics
, vol.29
, Issue.11
, pp. 1424-1432
-
-
Teng, Z.1
Guo, M.2
Liu, X.3
Dai, Q.4
Wang, C.5
Xuan, P.6
-
15
-
-
68249087607
-
Semantic similarity in biomedical ontologies
-
Jul.
-
C. Pesquita, D. Faria, A. O. Falcao, P. Lord, and F. M. Couto, "Semantic similarity in biomedical ontologies," PLoS Comput. Biol., vol. 5, no. 7, p. e1000443, Jul. 2009.
-
(2009)
PLoS Comput. Biol.
, vol.5
, Issue.7
-
-
Pesquita, C.1
Faria, D.2
Falcao, A.O.3
Lord, P.4
Couto, F.M.5
-
16
-
-
34248172904
-
Measures of semantic similarity and relatedness in the biomedical domain
-
Jun.
-
T. Pedersen, S. V. Pakhomov, S. Patwardhan, and C. G. Chute, "Measures of semantic similarity and relatedness in the biomedical domain," J. Biomed. Inform., vol. 40, no. 3, pp. 288-299, Jun. 2007.
-
(2007)
J. Biomed. Inform.
, vol.40
, Issue.3
, pp. 288-299
-
-
Pedersen, T.1
Pakhomov, S.V.2
Patwardhan, S.3
Chute, C.G.4
-
17
-
-
33750688534
-
Inter-patient distance metrics using SNOMED CT defining relationships
-
Dec.
-
G. B. Melton, S. Parsons, F. P. Morrison, A. S. Rothschild, M. Markatou, and G. Hripcsak, "Inter-patient distance metrics using SNOMED CT defining relationships," J. Biomed. Inform., vol. 39, no. 6, pp. 697-705, Dec. 2006.
-
(2006)
J. Biomed. Inform.
, vol.39
, Issue.6
, pp. 697-705
-
-
Melton, G.B.1
Parsons, S.2
Morrison, F.P.3
Rothschild, A.S.4
Markatou, M.5
Hripcsak, G.6
-
18
-
-
34047150038
-
A cluster-based approach for semantic similarity in the biomedical domain
-
H. Al-Mubaid and H. A. Nguyen, "A cluster-based approach for semantic similarity in the biomedical domain," Conf. Proc. IEEE Eng. Med. Biol. Soc., vol. 1, pp. 2713-7, 2006.
-
(2006)
Conf. Proc. IEEE Eng. Med. Biol. Soc.
, vol.1
, pp. 2713-2717
-
-
Al-Mubaid, H.1
Nguyen, H.A.2
-
19
-
-
84859699832
-
Disease Ontology: A backbone for disease semantic integration
-
Jan.
-
L. M. Schriml, C. Arze, S. Nadendla, Y. W. Chang, M. Mazaitis, V. Felix, G. Feng, and W. A. Kibbe, "Disease Ontology: A backbone for disease semantic integration," Nucleic. Acids Res., vol. 40, pp. D940-D946, Jan. 2012.
-
(2012)
Nucleic. Acids Res.
, vol.40
, pp. D940-D946
-
-
Schriml, L.M.1
Arze, C.2
Nadendla, S.3
Chang, Y.W.4
Mazaitis, M.5
Felix, V.6
Feng, G.7
Kibbe, W.A.8
-
20
-
-
84881538795
-
Literature mining associations of diseases using gene ontology
-
Apr.
-
L. Yang, Y. Zhou, and Z. Tang, "Literature mining associations of diseases using gene ontology," in Proc. Int. Conf. Comput. Sci. Edu., Apr. 2013, pp. 789-794.
-
(2013)
Proc. Int. Conf. Comput. Sci. Edu.
, pp. 789-794
-
-
Yang, L.1
Zhou, Y.2
Tang, Z.3
-
21
-
-
84864288185
-
A pathway-based view of human diseases and disease relationships
-
Y. Li and P. Agarwal, "A pathway-based view of human diseases and disease relationships," PLoS One, vol. 4, no. 2, p. e4346, 2009.
-
(2009)
PLoS One
, vol.4
, Issue.2
-
-
Li, Y.1
Agarwal, P.2
-
22
-
-
84858290561
-
Finding disease similarity based on implicit semantic similarity
-
Apr.
-
S. Mathur and D. Dinakarpandian, "Finding disease similarity based on implicit semantic similarity," J. Biomed. Inform., vol. 45, no. 2, pp. 363-371, Apr. 2012.
-
(2012)
J. Biomed. Inform.
, vol.45
, Issue.2
, pp. 363-371
-
-
Mathur, S.1
Dinakarpandian, D.2
-
23
-
-
77954193356
-
Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases
-
Jul. 1
-
D. Wang, J. Wang, M. Lu, F. Song, and Q. Cui, "Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases," Bioinformatics, vol. 26, no. 13, pp. 1644-1650, Jul. 1, 2010.
-
(2010)
Bioinformatics
, vol.26
, Issue.13
, pp. 1644-1650
-
-
Wang, D.1
Wang, J.2
Lu, M.3
Song, F.4
Cui, Q.5
-
24
-
-
83755205389
-
Prioritizing human cancer microRNAs based on genes' functional consistency between microRNA and cancer
-
Dec.
-
X. Li, Q. Wang, Y. Zheng, S. Lv, S. Ning, J. Sun, T. Huang, Q. Zheng, H. Ren, J. Xu, X. Wang, and Y. Li, "Prioritizing human cancer microRNAs based on genes' functional consistency between microRNA and cancer," Nucleic Acids Res., vol. 39, no. 22, p. e153, Dec. 2011.
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.22
, pp. e153
-
-
Li, X.1
Wang, Q.2
Zheng, Y.3
Lv, S.4
Ning, S.5
Sun, J.6
Huang, T.7
Zheng, Q.8
Ren, H.9
Xu, J.10
Wang, X.11
Li, Y.12
-
26
-
-
0005180705
-
An information-theoretic definition of similarity
-
D. Lin, "An information-theoretic definition of similarity," Proc. 15th Int. Conf. Mach. Learning, 1998, pp. 296-304.
-
(1998)
Proc. 15th Int. Conf. Mach. Learning
, pp. 296-304
-
-
Lin, D.1
-
27
-
-
78650858937
-
Building a biomedical ontology recommender web service
-
C. Jonquet, M. A. Musen, and N. H. Shah, "Building a biomedical ontology recommender web service," J. Biomed. Semantics, vol. 1, no. 1, p. S1, 2010.
-
(2010)
J. Biomed. Semantics
, vol.1
, Issue.1
, pp. S1
-
-
Jonquet, C.1
Musen, M.A.2
Shah, N.H.3
-
28
-
-
58149187893
-
The GOA database in 2009-an integrated gene ontology annotation resource
-
Jan.
-
D. Barrell, E. Dimmer, R. P. Huntley, D. Binns, C. O'Donovan, and R. Apweiler, "The GOA database in 2009-an integrated gene ontology annotation resource," Nucleic Acids Res., vol. 37, pp. D396-403, Jan. 2009.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D396-403
-
-
Barrell, D.1
Dimmer, E.2
Huntley, R.P.3
Binns, D.4
O'Donovan, C.5
Apweiler, R.6
-
29
-
-
66349110163
-
Annotating the human genome with disease ontology
-
J. D. Osborne, J. Flatow, M. Holko, S. M. Lin, W. A. Kibbe, L. J. Zhu, M. I. Danila, G. Feng, and R. L. Chisholm, "Annotating the human genome with disease ontology," BMC Genomics, vol. 10, no. 1, p. S6, 2009.
-
(2009)
BMC Genomics
, vol.10
, Issue.1
, pp. S6
-
-
Osborne, J.D.1
Flatow, J.2
Holko, M.3
Lin, S.M.4
Kibbe, W.A.5
Zhu, L.J.6
Danila, M.I.7
Feng, G.8
Chisholm, R.L.9
-
30
-
-
13444286777
-
Gene indexing: Characterization and analysis of NLM's GeneRIFs
-
J. A. Mitchell, A. R. Aronson, J. G. Mork, L. C. Folk, S. M. Humphrey, and J. M. Ward, "Gene indexing: Characterization and analysis of NLM's GeneRIFs," AMIA Annu. Symp. Proc., pp. 460-464, 2003.
-
(2003)
AMIA Annu. Symp. Proc.
, pp. 460-464
-
-
Mitchell, J.A.1
Aronson, A.R.2
Mork, J.G.3
Folk, L.C.4
Humphrey, S.M.5
Ward, J.M.6
-
31
-
-
84903289028
-
SemFunSim: A New method for measuring disease similarity by integrating semantic and gene functional association
-
L. Cheng, J. Li, P. Ju, J. Peng, and Y. Wang, "SemFunSim: A New method for measuring disease similarity by integrating semantic and gene functional association," PLoS One, vol. 9, no. 6, p. e99415, 2014.
-
(2014)
PLoS One
, vol.9
, Issue.6
-
-
Cheng, L.1
Li, J.2
Ju, P.3
Peng, J.4
Wang, Y.5
-
32
-
-
84885411363
-
SIDD: A semantically integrated database towards a global view of human disease
-
L. Cheng, G. Wang, J. Li, T. Zhang, P. Xu, and Y. Wang, "SIDD: A semantically integrated database towards a global view of human disease," PloS One, vol. 8, no. 10, p. e75504, 2013.
-
(2013)
PloS One
, vol.8
, Issue.10
-
-
Cheng, L.1
Wang, G.2
Li, J.3
Zhang, T.4
Xu, P.5
Wang, Y.6
-
33
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Y. Benjamini and Y. Hochberg, "Controlling the false discovery rate: A practical and powerful approach to multiple testing," J. Roy. Statist. Soc., Series B, pp. 289-300, 1995.
-
(1995)
J. Roy. Statist. Soc., Series B
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
34
-
-
15044357936
-
Survival model predictive accuracy and ROC curves
-
Mar.
-
P. J. Heagerty and Y. Zheng, "Survival model predictive accuracy and ROC curves," Biometrics, vol. 61, no. 1, pp. 92-105, Mar. 2005.
-
(2005)
Biometrics
, vol.61
, Issue.1
, pp. 92-105
-
-
Heagerty, P.J.1
Zheng, Y.2
|