Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities

BMC Bioinformatics

Volumn 16, Issue 1, 2015, Pages

  Nguyen, Van Nui ^a   Huang, Kai Yao ^a   Huang, Chien Hsun ^a,b   Chang, Tzu Hao ^c   Bretaña, Neil Arvin ^a   Lai, K Robert ^a   Weng, Julia Tzu Ya ^a   Lee, Tzong Yi ^a  

^a YUAN ZE UNIVERSITY   (Taiwan)

^b TAO YUAN GENERAL HOSPITAL   (Taiwan)

^c TAIPEI MEDICAL UNIVERSITY   (Taiwan)

Author keywords

Maximal dependence decomposition; Profile hidden Markov model; Substrate site specificity; Ubiquitin conjugation; Ubiquitination

Indexed keywords

AMINO ACIDS; ENZYMES; HIDDEN MARKOV MODELS; ITERATIVE METHODS; MARKOV PROCESSES; PROTEINS; STATISTICAL METHODS;

EXPERIMENTAL CONFIRMATION; PROFILE HIDDEN MARKOV MODEL; RECOGNITION SPECIFICITY; SITE-SPECIFICITY; SUBSTRATE SPECIFICITY; UBIQUITIN; UBIQUITINATED PROTEINS; UBIQUITINATION;

BIG DATA;

PROTEIN BINDING; UBIQUITIN; UBIQUITIN PROTEIN LIGASE;

ANIMAL; BIOLOGY; CHEMISTRY; ENZYME SPECIFICITY; HUMAN; METABOLISM; MOUSE; POSITION WEIGHT MATRIX; PROCEDURES; UBIQUITINATION;

ANIMALS; COMPUTATIONAL BIOLOGY; HUMANS; MICE; POSITION-SPECIFIC SCORING MATRICES; PROTEIN BINDING; SUBSTRATE SPECIFICITY; UBIQUITIN; UBIQUITIN-PROTEIN LIGASES; UBIQUITINATION;

EID: 84961589464     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-16-S1-S1     Document Type: Article

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