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Volumn 15, Issue 14, 2014, Pages

Community-driven development for computational biology at Sprints, Hackathons and Codefests

(28)  Möller, Steffen a,b   Afgan, Enis c,d   Banck, Michael b   Bonnal, Raoul JP e   Booth, Timothy f   Chilton, John g   Cock, Peter JA h   Gumbel, Markus i   Harris, Nomi j   Holland, Richard k,l   Kalaš, Matúš m   Kaján, László b,n   Kibukawa, Eri o   Powel, David R n,p   Prins, Pjotr q   Quinn, Jacqueline r   Sallou, Olivier b,s   Strozzi, Francesco t   Seemann, Torsten d,p   Sloggett, Clare d   more..


Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY;

EID: 84961577158     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-15-S14-S7     Document Type: Article
Times cited : (36)

References (29)
  • 1
    • 84859350703 scopus 로고    scopus 로고
    • The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
    • Katayama T, Arakawa K: The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J Biomed Semantics. 2010, 1 (1): 8-10.1186/2041-1480-1-8.
    • (2010) J Biomed Semantics , vol.1 , Issue.1 , pp. 8
    • Katayama, T.1    Arakawa, K.2
  • 2
    • 84911884509 scopus 로고    scopus 로고
    • The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
    • Katayama T, Wilkinson MD: The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J Biomed Semantics. 2011, 2 (2): 4-
    • (2011) J Biomed Semantics , vol.2 , Issue.2 , pp. 4
    • Katayama, T.1    Wilkinson, M.D.2
  • 3
    • 84939564975 scopus 로고    scopus 로고
    • The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
    • Katayama T, Wilkinson MD: The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. J Biomed Semantics. 2013, 4 (1): 6-10.1186/2041-1480-4-6.
    • (2013) J Biomed Semantics , vol.4 , Issue.1 , pp. 6
    • Katayama, T.1    Wilkinson, M.D.2
  • 4
    • 18644368714 scopus 로고    scopus 로고
    • The Bioperl toolkit: Perl modules for the life sciences
    • Stajich JE, Block D: The Bioperl toolkit: Perl modules for the life sciences. Genome Res. 2002, 12 (10): 1611-1618. 10.1101/gr.361602.
    • (2002) Genome Res , vol.12 , Issue.10 , pp. 1611-1618
    • Stajich, J.E.1    Block, D.2
  • 8
    • 84902159136 scopus 로고    scopus 로고
    • The Synthetic Biology Open Language Visual (SBOL) provides a community standard for communicating designs in synthetic biology
    • Galdzicki M, Clancy KP: The Synthetic Biology Open Language Visual (SBOL) provides a community standard for communicating designs in synthetic biology. Nat Biotechnol. 2014, 32 (6): 545-550. 10.1038/nbt.2891.
    • (2014) Nat Biotechnol , vol.32 , Issue.6 , pp. 545-550
    • Galdzicki, M.1    Clancy, K.P.2
  • 9
    • 84901417347 scopus 로고    scopus 로고
    • Prokka: rapid prokaryotic genome annotation
    • Seemann T: Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014, 30 (14): 2068-2069. 10.1093/bioinformatics/btu153.
    • (2014) Bioinformatics , vol.30 , Issue.14 , pp. 2068-2069
    • Seemann, T.1
  • 10
    • 84874229740 scopus 로고    scopus 로고
    • The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection
    • Fernández-Suárez XM, Galperin MY: The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection. Nucleic Acids Res. 2013, 41 (Database): D1-7.
    • (2013) Nucleic Acids Res , vol.41 , Issue.DATABASE , pp. D1-7
    • Fernández-Suárez, X.M.1    Galperin, M.Y.2
  • 13
    • 77957821620 scopus 로고    scopus 로고
    • BioRuby: bioinformatics software for the Ruby programming language
    • Goto N, Prins P, Nakao M, Bonnal R, Aerts J, Katayama T: BioRuby: bioinformatics software for the Ruby programming language. Bioinformatics. 2010, 26 (20): 2617-2619. 10.1093/bioinformatics/btq475.
    • (2010) Bioinformatics , vol.26 , Issue.20 , pp. 2617-2619
    • Goto, N.1    Prins, P.2    Nakao, M.3    Bonnal, R.4    Aerts, J.5    Katayama, T.6
  • 15
    • 84961652407 scopus 로고    scopus 로고
    • Packaging Software for Use in Medicine
    • Libre Software Meeting. Bordeaux, France
    • Tille A: Packaging Software for Use in Medicine. 2001, Libre Software Meeting. Bordeaux, France
    • (2001)
    • Tille, A.1
  • 18
    • 84858330364 scopus 로고    scopus 로고
    • Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community
    • Krampis K, Booth T, Chapman B, Tiwari B, Bicak M, Field D, Nelson KE: Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community. BMC Bioinformatics. 2012, 13: 42-10.1186/1471-2105-13-42.
    • (2012) BMC Bioinformatics , vol.13 , pp. 42
    • Krampis, K.1    Booth, T.2    Chapman, B.3    Tiwari, B.4    Bicak, M.5    Field, D.6    Nelson, K.E.7
  • 19
    • 10444272266 scopus 로고    scopus 로고
    • BOINC: A System for Public-Resource Computing and Storage
    • Proceedings of the 5th IEEE/ACM Workshop on Grid Computing
    • Anderson DP: BOINC: A System for Public-Resource Computing and Storage. Proceedings of the 5th IEEE/ACM Workshop on Grid Computing. 2004, 4-10.
    • (2004) , pp. 4-10
    • Anderson, D.P.1
  • 20
    • 84862119771 scopus 로고    scopus 로고
    • High-throughput Molecular Docking Now in Reach for a Wider Biochemical Community
    • Balan DM, Malinauskas T, Prins P, Möller S: High-throughput Molecular Docking Now in Reach for a Wider Biochemical Community. PDP. 2012, 617-621.
    • (2012) PDP , pp. 617-621
    • Balan, D.M.1    Malinauskas, T.2    Prins, P.3    Möller, S.4
  • 21
    • 84887962140 scopus 로고    scopus 로고
    • GenomeTools: a comprehensive software library for efficient processing of structured genome annotations
    • Gremme G, Steinbiss S, Kurtz S: GenomeTools: a comprehensive software library for efficient processing of structured genome annotations. IEEE/ACM Trans Comp Biol Bioinf. 2013, 10 (3): 645-656.
    • (2013) IEEE/ACM Trans Comp Biol Bioinf , vol.10 , Issue.3 , pp. 645-656
    • Gremme, G.1    Steinbiss, S.2    Kurtz, S.3
  • 22
    • 84864399234 scopus 로고    scopus 로고
    • ParsEval: parallel comparison and analysis of gene structure annotations
    • Standage DS, Brendel VP: ParsEval: parallel comparison and analysis of gene structure annotations. BMC Bioinformatics. 2012, 13: 187-10.1186/1471-2105-13-187.
    • (2012) BMC Bioinformatics , vol.13 , pp. 187
    • Standage, D.S.1    Brendel, V.P.2
  • 23
    • 84990838249 scopus 로고    scopus 로고
    • LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons
    • Steinbiss S, Kastens S, Kurtz S: LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons. Mobile DNA. 2012, 3: 18-10.1186/1759-8753-3-18.
    • (2012) Mobile DNA , vol.3 , pp. 18
    • Steinbiss, S.1    Kastens, S.2    Kurtz, S.3
  • 25
    • 84888245720 scopus 로고    scopus 로고
    • Breaking the Ice and Forging Links: The Importance of Socializing in Research
    • Stobbe M, Mishra T, Macintyre G: Breaking the Ice and Forging Links: The Importance of Socializing in Research. PLoS Comput Biol. 2013, 9 (11): e1003355-10.1371/journal.pcbi.1003355.
    • (2013) PLoS Comput Biol , vol.9 , Issue.11 , pp. e1003355
    • Stobbe, M.1    Mishra, T.2    Macintyre, G.3
  • 26
    • 85015702118 scopus 로고    scopus 로고
    • The Big Effects of Short-term Efforts: Mentorship and Code Integration in Open Source Scientific Software
    • Trainer EH, Chaihirunkarn C, Herbsleb JD: The Big Effects of Short-term Efforts: Mentorship and Code Integration in Open Source Scientific Software. Journal of Open Research Software. 2014, 2 (1): e18- http://openresearchsoftware.metajnl.com/article/view/jors.bc/57 ,
    • (2014) Journal of Open Research Software , vol.2 , Issue.1 , pp. e18
    • Trainer, E.H.1    Chaihirunkarn, C.2    Herbsleb, J.D.3
  • 28
    • 83055181941 scopus 로고    scopus 로고
    • Assemblathon 1: a competitive assessment of de novo short read assembly methods
    • Earl D, Bradnam K: Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res. 2011, 21 (12): 2224-2241. 10.1101/gr.126599.111.
    • (2011) Genome Res , vol.21 , Issue.12 , pp. 2224-2241
    • Earl, D.1    Bradnam, K.2
  • 29
    • 84864631234 scopus 로고    scopus 로고
    • Bioinformatics Meets User-Centred Design: A Perspective
    • Katrina Pavelin, Cham Jennifer A: Bioinformatics Meets User-Centred Design: A Perspective. PLoS Comput Biol. 2012, 8 (7): e1002554-10.1371/journal.pcbi.1002554.
    • (2012) PLoS Comput Biol , vol.8 , Issue.7 , pp. e1002554
    • Katrina, P.1    Cham, J.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.