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Volumn 10, Issue 12, 2015, Pages 1093-1098

Linkage disequilibrium analysis of allelic heterogeneity in DNA methylation

Author keywords

adjacent CpG sites; allelic heterogeneity; DNA methylation; DNA methyltransferase; germ cells

Indexed keywords

BISULFITE; HYDROGEN SULFITE; SULFITE;

EID: 84961572621     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.1080/15592294.2015.1115176     Document Type: Article
Times cited : (10)

References (24)
  • 3
    • 84875990411 scopus 로고    scopus 로고
    • High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice
    • 23410886
    • H.Kobayashi, T.Sakurai, F.Miura, M.Imai, K.Mochiduki, E.Yanagisawa, A.Sakashita, T.Wakai, Y.Suzuki, T.Ito, High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice. Genome Res 2013; 23:616–27; PMID:23410886; http://dx.doi.org/10.1101/gr.148023.112
    • (2013) Genome Res , vol.23 , pp. 616-627
    • Kobayashi, H.1    Sakurai, T.2    Miura, F.3    Imai, M.4    Mochiduki, K.5    Yanagisawa, E.6    Sakashita, A.7    Wakai, T.8    Suzuki, Y.9    Ito, T.10
  • 6
    • 84924290615 scopus 로고    scopus 로고
    • Deciphering the heterogeneity in DNA methylation patterns during stem cell differentiation and reprogramming
    • 25404570
    • X.Shao, C.Zhang, M.-A.Sun, X.Lu, H.Xie. Deciphering the heterogeneity in DNA methylation patterns during stem cell differentiation and reprogramming. BMC Genomics 2014; 15:978; PMID:25404570; http://dx.doi.org/10.1186/1471-2164-15-978
    • (2014) BMC Genomics , vol.15 , pp. 978
    • Shao, X.1    Zhang, C.2    Sun, M.-A.3    Lu, X.4    Xie, H.5
  • 9
    • 84916638952 scopus 로고    scopus 로고
    • Heterogeneous DNA methylation contributes to tumorigenesis through inducing the loss of coexpression connectivity in colorectal cancer
    • 25407423
    • Q.Wang, P.Jia, F.Cheng, Z.Zhao. Heterogeneous DNA methylation contributes to tumorigenesis through inducing the loss of coexpression connectivity in colorectal cancer. Genes Chromosomes Cancer 2015; 54:110–21; PMID:25407423; http://dx.doi.org/10.1002/gcc.22224
    • (2015) Genes Chromosomes Cancer , vol.54 , pp. 110-121
    • Wang, Q.1    Jia, P.2    Cheng, F.3    Zhao, Z.4
  • 10
    • 84857467013 scopus 로고    scopus 로고
    • Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks
    • 22242016
    • H.Kobayashi, T.Sakurai, M.Imai, N.Takahashi, A.Fukuda, O.Yayoi, S.Sato, K.Nakabayashi, K.Hata, Y.Sotomaru, Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks. PLoS Genet 2012; 8:e1002440; PMID:22242016; http://dx.doi.org/10.1371/journal.pgen.1002440
    • (2012) PLoS Genet , vol.8 , pp. e1002440
    • Kobayashi, H.1    Sakurai, T.2    Imai, M.3    Takahashi, N.4    Fukuda, A.5    Yayoi, O.6    Sato, S.7    Nakabayashi, K.8    Hata, K.9    Sotomaru, Y.10
  • 11
    • 84876820776 scopus 로고    scopus 로고
    • Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases
    • 23637617
    • K.Shirane, H.Toh, H.Kobayashi, F.Miura, H.Chiba, T.Ito, T.Kono, H.Sasaki. Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases. PLoS Genet 2013; 9:e1003439; PMID:23637617; http://dx.doi.org/10.1371/journal.pgen.1003439
    • (2013) PLoS Genet , vol.9 , pp. e1003439
    • Shirane, K.1    Toh, H.2    Kobayashi, H.3    Miura, F.4    Chiba, H.5    Ito, T.6    Kono, T.7    Sasaki, H.8
  • 12
    • 84893368571 scopus 로고    scopus 로고
    • Genome-wide age-related DNA methylation changes in blood and other tissues relate to histone modification, expression and cancer
    • 24287154
    • Z.Xu, J.A.Taylor. Genome-wide age-related DNA methylation changes in blood and other tissues relate to histone modification, expression and cancer. Carcinogenesis 2014; 35:356–64; PMID:24287154; http://dx.doi.org/10.1093/carcin/bgt391
    • (2014) Carcinogenesis , vol.35 , pp. 356-364
    • Xu, Z.1    Taylor, J.A.2
  • 13
    • 0035870563 scopus 로고    scopus 로고
    • A Retrotransposon-derived gene, PEG10, is a novel imprinted gene located on human chromosome 7q21
    • 11318613
    • R.Ono, S.Kobayashi, H.Wagatsuma, K.Aisaka, T.Kohda, T.Kaneko-Ishino, F.Ishino. A Retrotransposon-derived gene, PEG10, is a novel imprinted gene located on human chromosome 7q21. Genomics 2001; 73:232–7; PMID:11318613; http://dx.doi.org/10.1006/geno.2001.6494
    • (2001) Genomics , vol.73 , pp. 232-237
    • Ono, R.1    Kobayashi, S.2    Wagatsuma, H.3    Aisaka, K.4    Kohda, T.5    Kaneko-Ishino, T.6    Ishino, F.7
  • 14
    • 0037321187 scopus 로고    scopus 로고
    • A differentially methylated region within the gene Kcnq1 functions as an imprinted promoter and silencer
    • 12554682
    • D.Mancini-DiNardo, S.J.S.Steele, R.S.Ingram, S.M.Tilghman. A differentially methylated region within the gene Kcnq1 functions as an imprinted promoter and silencer. Hum Mol Genet 2003; 12:283–94; PMID:12554682; http://dx.doi.org/10.1093/hmg/ddg024
    • (2003) Hum Mol Genet , vol.12 , pp. 283-294
    • Mancini-DiNardo, D.1    Steele, S.J.S.2    Ingram, R.S.3    Tilghman, S.M.4
  • 15
    • 0038824784 scopus 로고    scopus 로고
    • Identification of a Large Novel Imprinted Gene Cluster on Mouse Proximal Chromosome 6
    • 12840045
    • R.Ono, H.Shiura, H.Aburatani, T.Kohda, T.Kaneko-Ishino, F.Ishino. Identification of a Large Novel Imprinted Gene Cluster on Mouse Proximal Chromosome 6. Genome Res 2003; 13:1696–705; PMID:12840045; http://dx.doi.org/10.1101/gr.906803
    • (2003) Genome Res , vol.13 , pp. 1696-1705
    • Ono, R.1    Shiura, H.2    Aburatani, H.3    Kohda, T.4    Kaneko-Ishino, T.5    Ishino, F.6
  • 16
    • 84929628130 scopus 로고    scopus 로고
    • Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation
    • 25074712
    • S.Lou, H.-M.Lee, H.Qin, J.-W.Li, Z.Gao, X.Liu, L.L.Chan, V.K.Lam, W.-Y.So, Y.Wang, Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation. Genome Biol 2014; 15:408; PMID:25074712; http://dx.doi.org/10.1186/s13059-014-0408-0
    • (2014) Genome Biol , vol.15 , pp. 408
    • Lou, S.1    Lee, H.-M.2    Qin, H.3    Li, J.-W.4    Gao, Z.5    Liu, X.6    Chan, L.L.7    Lam, V.K.8    So, W.-Y.9    Wang, Y.10
  • 17
    • 79955400147 scopus 로고    scopus 로고
    • Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks
    • 21526191
    • M.A.Hahn, X.Wu, A.X.Li, T.Hahn, G.P.Pfeifer. Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks. PLoS ONE 2011; 6:e18844; PMID:21526191; http://dx.doi.org/10.1371/journal.pone.0018844
    • (2011) PLoS ONE , vol.6 , pp. e18844
    • Hahn, M.A.1    Wu, X.2    Li, A.X.3    Hahn, T.4    Pfeifer, G.P.5
  • 20
    • 0035839126 scopus 로고    scopus 로고
    • Epigenetic reprogramming in mammalian development
    • 11498579
    • W.Reik, W.Dean, J.Walter. Epigenetic reprogramming in mammalian development. Science 2001; 293:1089–93; PMID:11498579; http://dx.doi.org/10.1126/science.1063443
    • (2001) Science , vol.293 , pp. 1089-1093
    • Reik, W.1    Dean, W.2    Walter, J.3
  • 21
    • 0033615717 scopus 로고    scopus 로고
    • DNA methyltransferases Dnmt3a and Dnmt3b are essential for De novo methylation and mammalian development
    • 10555141
    • M.Okano, D.W.Bell, D.A.Haber, E.Li. DNA methyltransferases Dnmt3a and Dnmt3b are essential for De novo methylation and mammalian development. Cell 1999; 99:247–57; PMID:10555141; http://dx.doi.org/10.1016/S0092-8674(00)81656-6
    • (1999) Cell , vol.99 , pp. 247-257
    • Okano, M.1    Bell, D.W.2    Haber, D.A.3    Li, E.4
  • 22
    • 68549090656 scopus 로고    scopus 로고
    • Heterogeneity of mouse primordial germ cells reflecting the distinct status of their differentiation, proliferation and apoptosis can be classified by the expression of cell surface proteins integrin α6 and c-Kit
    • 21314674
    • Y.Morita-Fujimura, Y.Tokitake, Y.Matsui. Heterogeneity of mouse primordial germ cells reflecting the distinct status of their differentiation, proliferation and apoptosis can be classified by the expression of cell surface proteins integrin α6 and c-Kit. Dev Growth Differ 2009; 51:567–83; PMID:21314674; http://dx.doi.org/10.1111/j.1440-169X.2009.01119.x
    • (2009) Dev Growth Differ , vol.51 , pp. 567-583
    • Morita-Fujimura, Y.1    Tokitake, Y.2    Matsui, Y.3
  • 23
    • 84903435240 scopus 로고    scopus 로고
    • New concepts in DNA methylation
    • 24947342
    • A.Jeltsch, R.Z.Jurkowska. New concepts in DNA methylation. Trends Biochem Sci 2014; 39:310–8; PMID:24947342; http://dx.doi.org/10.1016/j.tibs.2014.05.002
    • (2014) Trends Biochem Sci , vol.39 , pp. 310-318
    • Jeltsch, A.1    Jurkowska, R.Z.2
  • 24
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
    • 21493656
    • F.Krueger, S.R.Andrews. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 2011; 27:1571–2; PMID:21493656; http://dx.doi.org/10.1093/bioinformatics/btr167
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.