Sharing Data for Global Infectious Disease Surveillance and Outbreak Detection

Trends in Microbiology

Volumn 24, Issue 4, 2016, Pages 241-245

  Aarestrup, Frank M ^a   Koopmans, Marion G ^b  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b ERASMUS MEDICAL CENTER   (Netherlands)

Author keywords

Bacteria; Genomics; Infection; Metagenomics; Surveillance; Virus

Indexed keywords

BACTERIAL GENOME; BIOINFORMATICS; DISEASE CONTROL; DISEASE SURVEILLANCE; EBOLA HEMORRHAGIC FEVER; EPIDEMIC; EPIDEMIOLOGICAL DATA; HEALTH CARE ACCESS; HEALTH CARE POLICY; HEALTH CARE SYSTEM; HUMAN; INFECTION; INFORMATION PROCESSING; MEDICAL RESEARCH; METAGENOMICS; NEXT GENERATION SEQUENCING; NONHUMAN; NOTE; PRIORITY JOURNAL; COMMUNICABLE DISEASES; COMPUTER SYSTEM; DISEASE NOTIFICATION; DISEASE OUTBREAKS; FACTUAL DATABASE; GLOBAL HEALTH; HEALTH SURVEY; INFORMATION DISSEMINATION; PROCEDURES; STATISTICS;

COMMUNICABLE DISEASES; COMPUTER SYSTEMS; DATABASES, FACTUAL; DISEASE NOTIFICATION; DISEASE OUTBREAKS; GLOBAL HEALTH; HUMANS; INFORMATION DISSEMINATION; POPULATION SURVEILLANCE; STATISTICS AS TOPIC;

EID: 84961197542     PISSN: 0966842X     EISSN: 18784380     Source Type: Journal    
DOI: 10.1016/j.tim.2016.01.009     Document Type: Note

References (14)

1. Lozano R., et al. Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the Global Burden of Disease Study 2010. Lancet 2012, 380:2095-2128.
2. Baize S., et al. Emergence of Zaire Ebola virus disease in Guinea. N. Engl. J. Med. 2014, 371:1418-1425.
3. Braden C.R., et al. Progress in global surveillance and response capacity 10 years after severe acute respiratory syndrome. Emerg. Infect. Dis. 2013, 19:864-869.
4. Newell D.G., et al. Food-borne diseases - the challenges of 20 years ago still persist while new ones continue to emerge. Int. J. Food Microbiol. 2010, 139:3-15.
5. Morse S.S. Public health surveillance and infectious disease detection. Biosecur. Bioterror. 2012, 10:6-16.
6. Chan E.H., et al. Global capacity for emerging infectious disease detection. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:21701-21706.
7. International Health Regulations (2005) 2008, World Health Organization, World Health Organization. 2nd edn.
8. Dallman T.J. Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157. Clin. Infect. Dis. 2015, 61:305-312.
9. Reuter S. Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology. JAMA Intern. Med. 2013, 173:1397-1404.
10. Hasman H., et al. Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples. J. Clin. Microbiol. 2014, 52:139-146.
11. Petersen T.N., et al. Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance. Sci. Rep. 2015, 5:11444.
12. Smits S.L., et al. Recovering full-length viral genomes from metagenomes. Front. Microbiol. 2015, 6:1069.
13. Nakamura Y., et al. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res. 2013, 41:D21-D24. International Nucleotide Sequence Database Collaboration.
14. Hoffmann M., et al. Tracing origins of the Salmonella Bareilly strain causing a food-borne outbreak in the United States. J. Infect. Dis. 2015, 213:502-508.