ROBOT: A command-line tool for ontology development

CEUR Workshop Proceedings

Volumn 1515, Issue , 2015, Pages

  Overton, James A ^a   Dietze, Heiko ^b   Essaid, Shahim ^c   Osumi Sutherland, David ^d   Mungall, Christopher J ^b  

^a Knocean   (Canada)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^c OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^d WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMEDICAL ONTOLOGIES; COMMAND LINE; EXTRACTING ONTOLOGIES; ONTOLOGY DEVELOPMENT; OPEN SOURCES; WORK-FLOWS;

ROBOTS;

EID: 84960977058     PISSN: 16130073     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (6)

1. Courtot, M., Gibson, F., Lister, A. L., Malone, J., Schober, D., Brinkman, R. R., and Ruttenberg, A. (2011). MIREOT: The minimum information to reference an external ontology term. Applied Ontology, 6(1), 23-33.
2. Horridge, M. and Bechhofer, S. (2011). The OWL API: A Java API for OWL ontologies. Semantic Web, 2(1), 11-21.
3. Mungall, C. J., Dietze, H., Carbon, S., Ireland, A., Bauer, S., and Lewis, S. (2012). Continuous Integration of Open Biological Ontology libraries. Bio-Ontologies.
4. Mungall, C. J., Dietze, H., and Osumi-Sutherland, D. (2014). Use of OWL within the Gene Ontology. bioRxiv.
5. Rocca-Serra, P., Ruttenberg, A., O'Connor, M. J., Whetzel, P. L., Schober, D., Greenbaum, J., Courtot, M., Brinkman, R. R., Sansone, S. A., Scheuermann, R., et al. (2011). Overcoming the ontology enrichment bottleneck with quick term templates. Applied Ontology, 6(1), 13-22.
6. Smith, B., Ashburner, M., Rosse, C., Bard, J., Bug, W., Ceusters, W., Goldberg, L. J., Eilbeck, K., Ireland, A., Mungall, C. J., The OBI Consortium, Leontis, N., Rocca-Serra, P., Ruttenberg, A., Sansone, S.-A., Scheuermann, R. H., Shah, N., Whetzel, P. L., and Lewis, S. (2007). The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol, 25(11), 1251-1255.