메뉴 건너뛰기




Volumn 22, Issue 5, 2016, Pages 458.e1-458.e9

Metagenomic analysis of viral genetic diversity in respiratory samples from children with severe acute respiratory infection in China

Author keywords

Children; Metagenomics; Next generation sequencing; Severe acute respiratory tract infection; Virome

Indexed keywords

ADENOVIRIDAE; ANELLOVIRIDAE; ARTICLE; CHILD; CHINA; CONTROLLED STUDY; CORONAVIRIDAE; DISEASE SEVERITY; GENETIC VARIABILITY; HUMAN; MAJOR CLINICAL STUDY; METAGENOMICS; NASOPHARYNX; NEXT GENERATION SEQUENCING; NONHUMAN; ORTHOMYXOVIRIDAE; PARAMYXOVIRIDAE; PARVOVIRIDAE; PICORNAVIRIDAE; PRIORITY JOURNAL; RESPIRATORY TRACT INFECTION; RESPIRATORY VIRUS; SEVERE ACUTE RESPIRATORY INFECTION; VIRAL GENETICS; VIRUS GENOME; VIRUS IDENTIFICATION; CLASSIFICATION; COMPARATIVE STUDY; DNA SEQUENCE; FEMALE; GENETIC VARIATION; GENETICS; HIGH THROUGHPUT SEQUENCING; INFANT; ISOLATION AND PURIFICATION; MALE; NORMAL HUMAN; PRESCHOOL CHILD; VIROLOGY; VIRUS;

EID: 84960192429     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1016/j.cmi.2016.01.006     Document Type: Article
Times cited : (63)

References (30)
  • 1
    • 77951653074 scopus 로고    scopus 로고
    • Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis
    • Nair H., Nokes D.J., Gessner B.D., Dherani M., Madhi S.A., Singleton R.J., et al. Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis. Lancet 2010, 375:1545-1555.
    • (2010) Lancet , vol.375 , pp. 1545-1555
    • Nair, H.1    Nokes, D.J.2    Gessner, B.D.3    Dherani, M.4    Madhi, S.A.5    Singleton, R.J.6
  • 2
    • 12744254895 scopus 로고    scopus 로고
    • Office pediatrics: current issues in lower respiratory infections in children
    • Klig J.E., Shah N.B. Office pediatrics: current issues in lower respiratory infections in children. Curr Opin Pediatr 2005, 17:111-118.
    • (2005) Curr Opin Pediatr , vol.17 , pp. 111-118
    • Klig, J.E.1    Shah, N.B.2
  • 3
    • 84929660881 scopus 로고    scopus 로고
    • Detection of viral and bacterial pathogens in hospitalized children with acute respiratory illnesses, Chongqing, 2009-2013
    • Wei L., Liu W., Zhang X.A., Liu E.M., Wo Y., Cowling B.J., et al. Detection of viral and bacterial pathogens in hospitalized children with acute respiratory illnesses, Chongqing, 2009-2013. Medicine 2015, 94:e742.
    • (2015) Medicine , vol.94 , pp. e742
    • Wei, L.1    Liu, W.2    Zhang, X.A.3    Liu, E.M.4    Wo, Y.5    Cowling, B.J.6
  • 5
    • 66149101252 scopus 로고    scopus 로고
    • Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis
    • Victoria J.G., Kapoor A., Li L.L., Blinkova O., Slikas B., Wang C.L., et al. Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J Virol 2009, 83:4642-4651.
    • (2009) J Virol , vol.83 , pp. 4642-4651
    • Victoria, J.G.1    Kapoor, A.2    Li, L.L.3    Blinkova, O.4    Slikas, B.5    Wang, C.L.6
  • 7
    • 84898463443 scopus 로고    scopus 로고
    • Next-generation sequencing and bioinformatic approaches to detect and analyze influenza virus in ferrets
    • Lin Z., Farooqui A., Li G., Wong G.K., Mason A.L., Banner D., et al. Next-generation sequencing and bioinformatic approaches to detect and analyze influenza virus in ferrets. J Infect Dev Countr 2014, 8:498-509.
    • (2014) J Infect Dev Countr , vol.8 , pp. 498-509
    • Lin, Z.1    Farooqui, A.2    Li, G.3    Wong, G.K.4    Mason, A.L.5    Banner, D.6
  • 8
    • 78649394198 scopus 로고    scopus 로고
    • Metagenomic analysis of the viromes of three north american bat species: viral diversity among different bat species that share a common habitat
    • Donaldson E.F., Haskew A.N., Gates J.E., Huynh J., Moore C.J., Frieman M.B. Metagenomic analysis of the viromes of three north american bat species: viral diversity among different bat species that share a common habitat. J Virol 2010, 84:13004-13018.
    • (2010) J Virol , vol.84 , pp. 13004-13018
    • Donaldson, E.F.1    Haskew, A.N.2    Gates, J.E.3    Huynh, J.4    Moore, C.J.5    Frieman, M.B.6
  • 9
    • 84861397655 scopus 로고    scopus 로고
    • Metagenomic analysis of viruses from the bat fecal samples reveals many novel viruses in insectivorous bats in China
    • Ge X., Li Y., Yang X., Zhang H., Zhou P., Zhang Y., et al. Metagenomic analysis of viruses from the bat fecal samples reveals many novel viruses in insectivorous bats in China. J Virol 2012, JVI:0667111.
    • (2012) J Virol , vol.J6 , pp. 0667111
    • Ge, X.1    Li, Y.2    Yang, X.3    Zhang, H.4    Zhou, P.5    Zhang, Y.6
  • 11
    • 84910642026 scopus 로고    scopus 로고
    • Metagenomic identification of novel enteric viruses in urban wild rats and genome characterization of a group a rotavirus
    • Sachsenröder J., Braun A., Machnowska P., Ng T.F., Deng X., Guenther S., et al. Metagenomic identification of novel enteric viruses in urban wild rats and genome characterization of a group a rotavirus. J Gen Virol 2014, 95:2734-2747.
    • (2014) J Gen Virol , vol.95 , pp. 2734-2747
    • Sachsenröder, J.1    Braun, A.2    Machnowska, P.3    Ng, T.F.4    Deng, X.5    Guenther, S.6
  • 13
    • 70349675587 scopus 로고    scopus 로고
    • Metagenomic analysis of rna viruses in a fresh water lake
    • Djikeng A., Kuzmickas R., Anderson N.G., Spiro D.J. Metagenomic analysis of rna viruses in a fresh water lake. PLoS One 2009, 4:e7264.
    • (2009) PLoS One , vol.4 , pp. e7264
    • Djikeng, A.1    Kuzmickas, R.2    Anderson, N.G.3    Spiro, D.J.4
  • 14
    • 79952298772 scopus 로고    scopus 로고
    • Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis
    • Bogaert D., Keijser B., Huse S., Rossen J., Veenhoven R., van Gils E., et al. Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis. PLoS One 2011, 6:e17035.
    • (2011) PLoS One , vol.6 , pp. e17035
    • Bogaert, D.1    Keijser, B.2    Huse, S.3    Rossen, J.4    Veenhoven, R.5    van Gils, E.6
  • 15
    • 84857089823 scopus 로고    scopus 로고
    • Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing
    • Lysholm F., Wetterbom A., Lindau C., Darban H., Bjerkner A., Fahlander K., et al. Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing. PLoS One 2012, 7:e30875.
    • (2012) PLoS One , vol.7 , pp. e30875
    • Lysholm, F.1    Wetterbom, A.2    Lindau, C.3    Darban, H.4    Bjerkner, A.5    Fahlander, K.6
  • 16
    • 70350545933 scopus 로고    scopus 로고
    • Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals
    • Willner D., Furlan M., Haynes M., Schmieder R., Angly F.E., Silva J., et al. Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS One 2009, 4:e7370.
    • (2009) PLoS One , vol.4 , pp. e7370
    • Willner, D.1    Furlan, M.2    Haynes, M.3    Schmieder, R.4    Angly, F.E.5    Silva, J.6
  • 17
    • 80053550915 scopus 로고    scopus 로고
    • Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach
    • Yang J., Yang F., Ren L., Xiong Z., Wu Z., Dong J., et al. Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach. J Clin Microbiol 2011, 49:3463-3469.
    • (2011) J Clin Microbiol , vol.49 , pp. 3463-3469
    • Yang, J.1    Yang, F.2    Ren, L.3    Xiong, Z.4    Wu, Z.5    Dong, J.6
  • 18
    • 64149083137 scopus 로고    scopus 로고
    • Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach
    • Nakamura S., Yang C.S., Sakon N., Ueda M., Tougan T., Yamashita A., et al. Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach. PLoS One 2009, 4:e4219.
    • (2009) PLoS One , vol.4 , pp. e4219
    • Nakamura, S.1    Yang, C.S.2    Sakon, N.3    Ueda, M.4    Tougan, T.5    Yamashita, A.6
  • 19
    • 84862505339 scopus 로고    scopus 로고
    • Characterization of human coronavirus etiology in chinese adults with acute upper respiratory tract infection by real-time RT-PCR assays
    • Lu R., Yu X., Wang W., Duan X., Zhang L., Zhou W., et al. Characterization of human coronavirus etiology in chinese adults with acute upper respiratory tract infection by real-time RT-PCR assays. PLoS One 2012, 7:e38638.
    • (2012) PLoS One , vol.7 , pp. e38638
    • Lu, R.1    Yu, X.2    Wang, W.3    Duan, X.4    Zhang, L.5    Zhou, W.6
  • 20
    • 84882748280 scopus 로고    scopus 로고
    • Viral etiology and clinical profiles of children with severe acute respiratory infections in China
    • Zhang C., Zhu N., Xie Z., Lu R., He B., Liu C., et al. Viral etiology and clinical profiles of children with severe acute respiratory infections in China. PLoS One 2013, 8:e72606.
    • (2013) PLoS One , vol.8 , pp. e72606
    • Zhang, C.1    Zhu, N.2    Xie, Z.3    Lu, R.4    He, B.5    Liu, C.6
  • 22
    • 84926672739 scopus 로고    scopus 로고
    • Direct multiplexed whole genome sequencing of respiratory tract samples reveals full viral genomic information
    • Zoll J., Rahamat-Langendoen J., Ahout I., de Jonge M.I., Jans J., Huijnen M.A., et al. Direct multiplexed whole genome sequencing of respiratory tract samples reveals full viral genomic information. J Clin Virol 2015, 66:6-11.
    • (2015) J Clin Virol , vol.66 , pp. 6-11
    • Zoll, J.1    Rahamat-Langendoen, J.2    Ahout, I.3    de Jonge, M.I.4    Jans, J.5    Huijnen, M.A.6
  • 23
    • 84930385288 scopus 로고    scopus 로고
    • Prevalence and incidence of respiratory syncytial virus and other respiratory viral infections in children 6 months to 10 years of age with influenza-like illness enrolled in a randomized trial
    • Nolan T., Borja-Tabora C., Lopez P., Weckx L., Ulloa-Gutierrez R., Lazcano-Ponce E., et al. Prevalence and incidence of respiratory syncytial virus and other respiratory viral infections in children 6 months to 10 years of age with influenza-like illness enrolled in a randomized trial. Clin Infect Dis 2015, 60:e80-e89.
    • (2015) Clin Infect Dis , vol.60 , pp. e80-e89
    • Nolan, T.1    Borja-Tabora, C.2    Lopez, P.3    Weckx, L.4    Ulloa-Gutierrez, R.5    Lazcano-Ponce, E.6
  • 25
    • 84943266034 scopus 로고    scopus 로고
    • Community surveillance of respiratory viruses among families in the Utah Better Identification of Germs-Longitudinal Viral Epidemiology (BIG-LoVE) Study
    • Byington C.L., Ampofo K., Stockmann C., Adler F.R., Herbener A., Miller T., et al. Community surveillance of respiratory viruses among families in the Utah Better Identification of Germs-Longitudinal Viral Epidemiology (BIG-LoVE) Study. Clin Infect Dis 2015, 61(8):1217-1224.
    • (2015) Clin Infect Dis , vol.61 , Issue.8 , pp. 1217-1224
    • Byington, C.L.1    Ampofo, K.2    Stockmann, C.3    Adler, F.R.4    Herbener, A.5    Miller, T.6
  • 26
    • 74149093172 scopus 로고    scopus 로고
    • Torquetenovirus viremia kinetics after autologous stem cell transplantation are predictable and may serve as a surrogate marker of functional immune reconstitution
    • Focosi D., Maggi F., Albani M., Macera L., Ricci V., Gragnani S., et al. Torquetenovirus viremia kinetics after autologous stem cell transplantation are predictable and may serve as a surrogate marker of functional immune reconstitution. J Clin Virol 2010, 47:189-192.
    • (2010) J Clin Virol , vol.47 , pp. 189-192
    • Focosi, D.1    Maggi, F.2    Albani, M.3    Macera, L.4    Ricci, V.5    Gragnani, S.6
  • 28
    • 84919870992 scopus 로고    scopus 로고
    • Viral metagenomics reveal blooms of anelloviruses in the respiratory tract of lung transplant recipients
    • Young J.C., Chehoud C., Bittinger K., Bailey A., Diamond J.M., Cantu E., et al. Viral metagenomics reveal blooms of anelloviruses in the respiratory tract of lung transplant recipients. Am J Transplant 2015, 15:200-209.
    • (2015) Am J Transplant , vol.15 , pp. 200-209
    • Young, J.C.1    Chehoud, C.2    Bittinger, K.3    Bailey, A.4    Diamond, J.M.5    Cantu, E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.