-
1
-
-
19944427959
-
Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia
-
Woo, P. C. et al. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J. Virol. 79, 884-895 (2005).
-
(2005)
J. Virol.
, vol.79
, pp. 884-895
-
-
Woo, P.C.1
-
2
-
-
2442691467
-
Severe acute respiratory syndrome
-
Christian, M. D., Poutanen, S. M., Loutfy, M. R., Muller, M. P. & Low, D. E. Severe acute respiratory syndrome. Clin. Infect. Dis. 38, 1420-1427 (2004).
-
(2004)
Clin. Infect. Dis.
, vol.38
, pp. 1420-1427
-
-
Christian, M.D.1
Poutanen, S.M.2
Loutfy, M.R.3
Muller, M.P.4
Low, D.E.5
-
3
-
-
84868516062
-
Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia
-
Zaki, A. M., van Boheemen, S., Bestebroer, T. M., Osterhaus, A. D. & Fouchier, R. A. Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. N. Engl. J. Med. 367, 1814-1820 (2012).
-
(2012)
N. Engl. J. Med.
, vol.367
, pp. 1814-1820
-
-
Zaki, A.M.1
Van Boheemen, S.2
Bestebroer, T.M.3
Osterhaus, A.D.4
Fouchier, R.A.5
-
4
-
-
77949405054
-
Recombination, reservoirs, and the modular spike: Mechanisms of coronavirus cross-species transmission
-
Graham, R. L. & Baric, R. S. Recombination, reservoirs, and the modular spike: mechanisms of coronavirus cross-species transmission. J. Virol. 84, 3134-3146 (2010).
-
(2010)
J. Virol.
, vol.84
, pp. 3134-3146
-
-
Graham, R.L.1
Baric, R.S.2
-
5
-
-
84930047858
-
Host cell proteases: Critical determinants of coronavirus tropism and pathogenesis
-
Millet, J. K. & Whittaker, G. R. Host cell proteases: critical determinants of coronavirus tropism and pathogenesis. Virus Res. 202, 120-134 (2015).
-
(2015)
Virus Res.
, vol.202
, pp. 120-134
-
-
Millet, J.K.1
Whittaker, G.R.2
-
6
-
-
0344395657
-
Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus
-
Li, W. et al. Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus. Nature 426, 450-454 (2003).
-
(2003)
Nature
, vol.426
, pp. 450-454
-
-
Li, W.1
-
7
-
-
84881232247
-
The receptor binding domain of the new Middle East respiratory syndrome coronavirus maps to a 231-residue region in the spike protein that efficiently elicits neutralizing antibodies
-
Mou, H. et al. The receptor binding domain of the new Middle East respiratory syndrome coronavirus maps to a 231-residue region in the spike protein that efficiently elicits neutralizing antibodies. J. Virol. 87, 9379-9383 (2013).
-
(2013)
J. Virol.
, vol.87
, pp. 9379-9383
-
-
Mou, H.1
-
8
-
-
84871290676
-
Crystal structure of bovine coronavirus spike protein lectin domain
-
Peng, G. et al. Crystal structure of bovine coronavirus spike protein lectin domain. J. Biol. Chem. 287, 41931-41938 (2012).
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 41931-41938
-
-
Peng, G.1
-
9
-
-
84931053998
-
Human coronavirus HKU1 spike protein uses O-acetylated sialic acid as an attachment receptor determinant and employs hemagglutinin-esterase protein as a receptor-destroying enzyme
-
Huang, X. et al. Human coronavirus HKU1 spike protein uses O-acetylated sialic acid as an attachment receptor determinant and employs hemagglutinin-esterase protein as a receptor-destroying enzyme. J. Virol. 89, 7202-7213 (2015).
-
(2015)
J. Virol.
, vol.89
, pp. 7202-7213
-
-
Huang, X.1
-
10
-
-
84921664670
-
Receptor recognition mechanisms of coronaviruses: A decade of structural studies
-
Li, F. Receptor recognition mechanisms of coronaviruses: a decade of structural studies. J. Virol. 89, 1954-1964 (2015).
-
(2015)
J. Virol.
, vol.89
, pp. 1954-1964
-
-
Li, F.1
-
11
-
-
24944498409
-
Structure of SARS coronavirus spike receptor-binding domain complexed with receptor
-
Li, F., Li, W., Farzan, M. & Harrison, S. C. Structure of SARS coronavirus spike receptor-binding domain complexed with receptor. Science 309, 1864-1868 (2005).
-
(2005)
Science
, vol.309
, pp. 1864-1868
-
-
Li, F.1
Li, W.2
Farzan, M.3
Harrison, S.C.4
-
12
-
-
84881479703
-
Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26
-
Lu, G. et al. Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26. Nature 500, 227-231 (2013).
-
(2013)
Nature
, vol.500
, pp. 227-231
-
-
Lu, G.1
-
13
-
-
84938919507
-
Identification of the receptor-binding domain of the spike glycoprotein of human betacoronavirus HKU1
-
Qian, Z. et al. Identification of the receptor-binding domain of the spike glycoprotein of human betacoronavirus HKU1. J. Virol. 89, 8816-8827 (2015).
-
(2015)
J. Virol.
, vol.89
, pp. 8816-8827
-
-
Qian, Z.1
-
14
-
-
0019890491
-
Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3Å resolution
-
Wilson, I. A., Skehel, J. J. & Wiley, D. C. Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3Å resolution. Nature 289, 366-373 (1981).
-
(1981)
Nature
, vol.289
, pp. 366-373
-
-
Wilson, I.A.1
Skehel, J.J.2
Wiley, D.C.3
-
15
-
-
84890858459
-
Crystal structure of a soluble cleaved HIV-1 envelope trimer
-
Julien, J. P. et al. Crystal structure of a soluble cleaved HIV-1 envelope trimer. Science 342, 1477-1483 (2013).
-
(2013)
Science
, vol.342
, pp. 1477-1483
-
-
Julien, J.P.1
-
16
-
-
84890859441
-
Cryo-EM structure of a fully glycosylated soluble cleaved HIV-1 envelope trimer
-
Lyumkis, D. et al. Cryo-EM structure of a fully glycosylated soluble cleaved HIV-1 envelope trimer. Science 342, 1484-1490 (2013).
-
(2013)
Science
, vol.342
, pp. 1484-1490
-
-
Lyumkis, D.1
-
17
-
-
67650899039
-
Characterization of a highly conserved domain within the severe acute respiratory syndrome coronavirus spike protein S2 domain with characteristics of a viral fusion peptide
-
Madu, I. G., Roth, S. L., Belouzard, S. & Whittaker, G. R. Characterization of a highly conserved domain within the severe acute respiratory syndrome coronavirus spike protein S2 domain with characteristics of a viral fusion peptide. J. Virol. 83, 7411-7421 (2009).
-
(2009)
J. Virol.
, vol.83
, pp. 7411-7421
-
-
Madu, I.G.1
Roth, S.L.2
Belouzard, S.3
Whittaker, G.R.4
-
18
-
-
33645788357
-
Role of endosomal cathepsins in entry mediated by the Ebola virus glycoprotein
-
Schornberg, K. et al. Role of endosomal cathepsins in entry mediated by the Ebola virus glycoprotein. J. Virol. 80, 4174-4178 (2006).
-
(2006)
J. Virol.
, vol.80
, pp. 4174-4178
-
-
Schornberg, K.1
-
19
-
-
0035943659
-
Proteolytic activation of respiratory syncytial virus fusion protein. Cleavage at two furin consensus sequences
-
Zimmer, G., Budz, L. & Herrler, G. Proteolytic activation of respiratory syncytial virus fusion protein. Cleavage at two furin consensus sequences. J. Biol. Chem. 276, 31642-31650 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 31642-31650
-
-
Zimmer, G.1
Budz, L.2
Herrler, G.3
-
20
-
-
0042208243
-
The coronavirus spike protein is a class I virus fusion protein: Structural and functional characterization of the fusion core complex
-
Bosch, B. J., van der Zee, R., de Haan, C. A. & Rottier, P. J. The coronavirus spike protein is a class I virus fusion protein: structural and functional characterization of the fusion core complex. J. Virol. 77, 8801-8811 (2003).
-
(2003)
J. Virol.
, vol.77
, pp. 8801-8811
-
-
Bosch, B.J.1
Van Der-Zee, R.2
De Haan, C.A.3
Rottier, P.J.4
-
21
-
-
0028023726
-
Structure of influenza haemagglutinin at the pH of membrane fusion
-
Bullough, P. A., Hughson, F. M., Skehel, J. J. & Wiley, D. C. Structure of influenza haemagglutinin at the pH of membrane fusion. Nature 371, 37-43 (1994).
-
(1994)
Nature
, vol.371
, pp. 37-43
-
-
Bullough, P.A.1
Hughson, F.M.2
Skehel, J.J.3
Wiley, D.C.4
-
22
-
-
17444401009
-
Central ions and lateral asparagine/glutamine zippers stabilize the post-fusion hairpin conformation of the SARS coronavirus spike glycoprotein
-
Duquerroy, S., Vigouroux, A., Rottier, P. J., Rey, F. A. & Bosch, B. J. Central ions and lateral asparagine/glutamine zippers stabilize the post-fusion hairpin conformation of the SARS coronavirus spike glycoprotein. Virology 335, 276-285 (2005).
-
(2005)
Virology
, vol.335
, pp. 276-285
-
-
Duquerroy, S.1
Vigouroux, A.2
Rottier, P.J.3
Rey, F.A.4
Bosch, B.J.5
-
23
-
-
84893254396
-
Structure-based discovery of Middle East respiratory syndrome coronavirus fusion inhibitor
-
Lu, L. et al. Structure-based discovery of Middle East respiratory syndrome coronavirus fusion inhibitor. Nature Commun. 5, 3067 (2014).
-
(2014)
Nature Commun.
, vol.5
, pp. 3067
-
-
Lu, L.1
-
24
-
-
33745794872
-
Conformational states of the severe acute respiratory syndrome coronavirus spike protein ectodomain
-
Li, F. et al. Conformational states of the severe acute respiratory syndrome coronavirus spike protein ectodomain. J. Virol. 80, 6794-6800 (2006).
-
(2006)
J. Virol.
, vol.80
, pp. 6794-6800
-
-
Li, F.1
-
25
-
-
70350322417
-
Two-step conformational changes in a coronavirus envelope glycoprotein mediated by receptor binding and proteolysis
-
Matsuyama, S. & Taguchi, F. Two-step conformational changes in a coronavirus envelope glycoprotein mediated by receptor binding and proteolysis. J. Virol. 83, 11133-11141 (2009).
-
(2009)
J. Virol.
, vol.83
, pp. 11133-11141
-
-
Matsuyama, S.1
Taguchi, F.2
-
26
-
-
23844448345
-
Inhibitors of cathepsin L prevent severe acute respiratory syndrome coronavirus entry
-
Simmons, G. et al. Inhibitors of cathepsin L prevent severe acute respiratory syndrome coronavirus entry. Proc. Natl Acad. Sci. USA 102, 11876-11881 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 11876-11881
-
-
Simmons, G.1
-
27
-
-
84944190259
-
Complete epitopes for vaccine design derived from a crystal structure of the broadly neutralizing antibodies PGT128 and 8ANC195 in complex with an HIV-1 Env trimer
-
Kong, L. et al. Complete epitopes for vaccine design derived from a crystal structure of the broadly neutralizing antibodies PGT128 and 8ANC195 in complex with an HIV-1 Env trimer. Acta Crystallogr. D 71, 2099-2108 (2015).
-
(2015)
Acta Crystallogr. D
, vol.71
, pp. 2099-2108
-
-
Kong, L.1
-
28
-
-
84911404794
-
Receptor mimicry by antibody F045-092 facilitates universal binding to the H3 subtype of influenza virus
-
Lee, P. S. et al. Receptor mimicry by antibody F045-092 facilitates universal binding to the H3 subtype of influenza virus. Nature Commun. 5, 3614 (2014).
-
(2014)
Nature Commun.
, vol.5
, pp. 3614
-
-
Lee, P.S.1
-
29
-
-
84887277978
-
Structure-based design of a fusion glycoprotein vaccine for respiratory syncytial virus
-
McLellan, J. S. et al. Structure-based design of a fusion glycoprotein vaccine for respiratory syncytial virus. Science 342, 592-598 (2013).
-
(2013)
Science
, vol.342
, pp. 592-598
-
-
McLellan, J.S.1
-
30
-
-
84884678235
-
A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies
-
Sanders, R. W. et al. A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies. PLoS Pathog. 9, e1003618 (2013).
-
(2013)
PLoS Pathog.
, vol.9
, pp. e1003618
-
-
Sanders, R.W.1
-
31
-
-
20544468931
-
Automated molecular microscopy: The new Leginon system
-
Suloway, C. et al. Automated molecular microscopy: the new Leginon system. J. Struct. Biol. 151, 41-60 (2005).
-
(2005)
J. Struct. Biol.
, vol.151
, pp. 41-60
-
-
Suloway, C.1
-
32
-
-
60649103238
-
Appion: An integrated, database-driven pipeline to facilitate em image processing
-
Lander, G. C. et al. Appion: an integrated, database-driven pipeline to facilitate EM image processing. J. Struct. Biol. 166, 95-102 (2009).
-
(2009)
J. Struct. Biol.
, vol.166
, pp. 95-102
-
-
Lander, G.C.1
-
33
-
-
63649113687
-
DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy
-
Voss, N. R., Yoshioka, C. K., Radermacher, M., Potter, C. S. & Carragher, B. DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy. J. Struct. Biol. 166, 205-213 (2009).
-
(2009)
J. Struct. Biol.
, vol.166
, pp. 205-213
-
-
Voss, N.R.1
Yoshioka, C.K.2
Radermacher, M.3
Potter, C.S.4
Carragher, B.5
-
34
-
-
0142059303
-
Topology representing network enables highly accurate classification of protein images taken by cryo electron-microscope without masking
-
Ogura, T., Iwasaki, K. & Sato, C. Topology representing network enables highly accurate classification of protein images taken by cryo electron-microscope without masking. J. Struct. Biol. 143, 185-200 (2003).
-
(2003)
J. Struct. Biol.
, vol.143
, pp. 185-200
-
-
Ogura, T.1
Iwasaki, K.2
Sato, C.3
-
35
-
-
84863011784
-
Iterative stable alignment and clustering of 2D transmission electron microscope images
-
Yang, Z., Fang, J., Chittuluru, J., Asturias, F. J. & Penczek, P. A. Iterative stable alignment and clustering of 2D transmission electron microscope images. Structure 20, 237-247 (2012).
-
(2012)
Structure
, vol.20
, pp. 237-247
-
-
Yang, Z.1
Fang, J.2
Chittuluru, J.3
Asturias, F.J.4
Penczek, P.A.5
-
36
-
-
33845332754
-
EMAN2: An extensible image processing suite for electron microscopy
-
Tang, G. et al. EMAN2: an extensible image processing suite for electron microscopy. J. Struct. Biol. 157, 38-46 (2007).
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 38-46
-
-
Tang, G.1
-
37
-
-
0033377664
-
EMAN: Semiautomated software for high-resolution single-particle reconstructions
-
Ludtke, S. J., Baldwin, P. R. & Chiu, W. EMAN: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 128, 82-97 (1999).
-
(1999)
J. Struct. Biol.
, vol.128
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
38
-
-
84880848354
-
Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM
-
Li, X. et al. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nature Methods 10, 584-590 (2013).
-
(2013)
Nature Methods
, vol.10
, pp. 584-590
-
-
Li, X.1
-
39
-
-
0038441501
-
Accurate determination of local defocus and specimen tilt in electron microscopy
-
Mindell, J. A. & Grigorieff, N. Accurate determination of local defocus and specimen tilt in electron microscopy. J. Struct. Biol. 142, 334-347 (2003).
-
(2003)
J. Struct. Biol.
, vol.142
, pp. 334-347
-
-
Mindell, J.A.1
Grigorieff, N.2
-
40
-
-
0029975088
-
SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields
-
Frank, J. et al. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 116, 190-199 (1996).
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 190-199
-
-
Frank, J.1
-
41
-
-
84868444740
-
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
-
Scheres, S. H. RELION: implementation of a Bayesian approach to cryo-EM structure determination. J. Struct. Biol. 180, 519-530 (2012).
-
(2012)
J. Struct. Biol.
, vol.180
, pp. 519-530
-
-
Scheres, S.H.1
-
42
-
-
84866078359
-
Prevention of overfitting in cryo-EM structure determination
-
Scheres, S. H. & Chen, S. Prevention of overfitting in cryo-EM structure determination. Nature Methods 9, 853-854 (2012).
-
(2012)
Nature Methods
, vol.9
, pp. 853-854
-
-
Scheres, S.H.1
Chen, S.2
-
43
-
-
84949215654
-
Comparative protein structure modeling using MODELLER
-
Webb, B. & Sali, A. Comparative protein structure modeling using MODELLER. Curr Protoc Bioinformatics 47, 5.6.1-5.6.32 (2014).
-
(2014)
Curr Protoc Bioinformatics
, vol.47
, pp. 1-32
-
-
Webb, B.1
Sali, A.2
-
44
-
-
4444221565
-
UCSF Chimera-A visualization system for exploratory research and analysis
-
Pettersen, E. F. et al. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 (2004).
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
45
-
-
84926520440
-
Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement
-
DiMaio, F. et al. Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement. Nature Methods 12, 361-365 (2015).
-
(2015)
Nature Methods
, vol.12
, pp. 361-365
-
-
DiMaio, F.1
-
46
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. Features and development of Coot. Acta Crystallogr. D 66, 486-501 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
47
-
-
68949187842
-
Refinement of protein structures into low-resolution density maps using Rosetta
-
DiMaio, F. et al. Refinement of protein structures into low-resolution density maps using Rosetta. J. Mol. Biol. 392, 181-190 (2009).
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 181-190
-
-
DiMaio, F.1
-
48
-
-
84959080555
-
EMRinger: Side chain-directed model and map validation for 3D cryo-electron microscopy
-
Barad, B. A. et al. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nature Methods 12, 943-946 (2015).
-
(2015)
Nature Methods
, vol.12
, pp. 943-946
-
-
Barad, B.A.1
-
49
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D 66, 12-21 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
51
-
-
84894623755
-
Quantifying the local resolution of cryo-EM density maps
-
Kucukelbir, A., Sigworth, F. J. & Tagare, H. D. Quantifying the local resolution of cryo-EM density maps. Nature Methods 11, 63-65 (2014).
-
(2014)
Nature Methods
, vol.11
, pp. 63-65
-
-
Kucukelbir, A.1
Sigworth, F.J.2
Tagare, H.D.3
-
53
-
-
47049107589
-
Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor
-
Lee, J. E. et al. Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor. Nature 454, 177-182 (2008).
-
(2008)
Nature
, vol.454
, pp. 177-182
-
-
Lee, J.E.1
-
54
-
-
84878349946
-
Structure of RSV fusion glycoprotein trimer bound to a prefusion-specific neutralizing antibody
-
McLellan, J. S. et al. Structure of RSV fusion glycoprotein trimer bound to a prefusion-specific neutralizing antibody. Science 340, 1113-1117 (2013).
-
(2013)
Science
, vol.340
, pp. 1113-1117
-
-
McLellan, J.S.1
-
55
-
-
84867351430
-
Structure of the cleavage-activated prefusion form of the parainfluenza virus 5 fusion protein
-
Welch, B. D. et al. Structure of the cleavage-activated prefusion form of the parainfluenza virus 5 fusion protein. Proc. Natl Acad. Sci. USA 109, 16672-16677 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 16672-16677
-
-
Welch, B.D.1
-
56
-
-
84955495688
-
Structure and stabilization of the Hendra virus F glycoprotein in its prefusion form
-
Wong, J. J., Paterson, R. G., Lamb, R. A. & Jardetzky, T. S. Structure and stabilization of the Hendra virus F glycoprotein in its prefusion form. Proc. Natl Acad. Sci. USA 113, 1056-1061 (2016).
-
(2016)
Proc. Natl Acad. Sci. USA
, vol.113
, pp. 1056-1061
-
-
Wong, J.J.1
Paterson, R.G.2
Lamb, R.A.3
Jardetzky, T.S.4
-
57
-
-
84953222042
-
Crystal structure of the pre-fusion Nipah virus fusion glycoprotein reveals a novel hexamer-of-trimers assembly
-
Xu, K. et al. Crystal structure of the pre-fusion Nipah virus fusion glycoprotein reveals a novel hexamer-of-trimers assembly. PLoS Pathog. 11, e1005322 (2015).
-
(2015)
PLoS Pathog.
, vol.11
, pp. e1005322
-
-
Xu, K.1
|