메뉴 건너뛰기




Volumn 17, Issue 1, 2016, Pages

Consequential considerations when mapping tRNA fragments

Author keywords

3' halves; 3' tRFs; 5' halves; 5' tRFs; I tRFs; RepeatMasker; TRFs; TRNA fragments; TRNA lookalikes; TRNAs

Indexed keywords

3'-HALVES; 3'-TRFS; 5'-HALVES; 5'-TRFS; REPEATMASKER; TRFS; TRNA FRAGMENTS; TRNA-LOOKALIKES; TRNAS;

EID: 84960129858     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-016-0921-0     Document Type: Article
Times cited : (29)

References (16)
  • 1
    • 84946201699 scopus 로고    scopus 로고
    • tDRmapper: challenges and solutions to mapping, naming, and quantifying tRNA-derived RNAs from human small RNA-sequencing data
    • Selitsky SR, Sethupathy P. tDRmapper: challenges and solutions to mapping, naming, and quantifying tRNA-derived RNAs from human small RNA-sequencing data. BMC Bioinformatics. 2015;16:354.
    • (2015) BMC Bioinformatics , vol.16 , pp. 354
    • Selitsky, S.R.1    Sethupathy, P.2
  • 2
    • 84893147804 scopus 로고    scopus 로고
    • Slicing tRNAs to boost functional ncRNA diversity
    • Gebetsberger J, Polacek N. Slicing tRNAs to boost functional ncRNA diversity. RNA Biol. 2013;10(12):1798-806.
    • (2013) RNA Biol , vol.10 , Issue.12 , pp. 1798-1806
    • Gebetsberger, J.1    Polacek, N.2
  • 4
    • 84857692673 scopus 로고    scopus 로고
    • Transfer RNA-derived fragments: origins, processing, and functions
    • Sobala A, Hutvagner G. Transfer RNA-derived fragments: origins, processing, and functions. Wiley Interdiscip Rev RNA. 2011;2(6):853-62.
    • (2011) Wiley Interdiscip Rev RNA , vol.2 , Issue.6 , pp. 853-862
    • Sobala, A.1    Hutvagner, G.2
  • 5
    • 84949117821 scopus 로고    scopus 로고
    • Nuclear and mitochondrial tRNA-lookalikes in the human genome
    • Telonis AG, Loher P, Kirino Y, Rigoutsos I. Nuclear and mitochondrial tRNA-lookalikes in the human genome. Front Genet. 2014;5:344.
    • (2014) Front Genet , vol.5 , pp. 344
    • Telonis, A.G.1    Loher, P.2    Kirino, Y.3    Rigoutsos, I.4
  • 6
    • 84941358900 scopus 로고    scopus 로고
    • Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies
    • Telonis AG, Loher P, Honda S, Jing Y, Palazzo J, Kirino Y, et al. Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies. Oncotarget. 2015;6(28):24797-822.
    • (2015) Oncotarget , vol.6 , Issue.28 , pp. 24797-24822
    • Telonis, A.G.1    Loher, P.2    Honda, S.3    Jing, Y.4    Palazzo, J.5    Kirino, Y.6
  • 7
    • 84921448966 scopus 로고    scopus 로고
    • Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets
    • Kumar P, Anaya J, Mudunuri SB, Dutta A. Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets. BMC Biol. 2014;12(1):78.
    • (2014) BMC Biol , vol.12 , Issue.1 , pp. 78
    • Kumar, P.1    Anaya, J.2    Mudunuri, S.B.3    Dutta, A.4
  • 8
    • 84929328804 scopus 로고    scopus 로고
    • Mitochondrial tRNA-lookalikes in nuclear chromosomes: could they be functional?
    • Telonis AG, Kirino Y, Rigoutsos I. Mitochondrial tRNA-lookalikes in nuclear chromosomes: could they be functional? RNA Biol. 2015;12(4):375-80.
    • (2015) RNA Biol , vol.12 , Issue.4 , pp. 375-380
    • Telonis, A.G.1    Kirino, Y.2    Rigoutsos, I.3
  • 9
    • 33646242293 scopus 로고    scopus 로고
    • Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes
    • Rigoutsos I, Huynh T, Miranda K, Tsirigos A, McHardy A, Platt D. Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes. Proc Natl Acad Sci U S A. 2006;103(17):6605-10.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , Issue.17 , pp. 6605-6610
    • Rigoutsos, I.1    Huynh, T.2    Miranda, K.3    Tsirigos, A.4    McHardy, A.5    Platt, D.6
  • 11
    • 84884627102 scopus 로고    scopus 로고
    • Analysis of the microRNA transcriptome and expression of different isomiRs in human peripheral blood mononuclear cells
    • Vaz C, Ahmad HM, Bharti R, Pandey P, Kumar L, Kulshreshtha R, et al. Analysis of the microRNA transcriptome and expression of different isomiRs in human peripheral blood mononuclear cells. BMC Res Notes. 2013;6:390.
    • (2013) BMC Res Notes , vol.6 , pp. 390
    • Vaz, C.1    Ahmad, H.M.2    Bharti, R.3    Pandey, P.4    Kumar, L.5    Kulshreshtha, R.6
  • 12
    • 84907984631 scopus 로고    scopus 로고
    • IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies
    • Loher P, Londin ER, Rigoutsos I. IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies. Oncotarget. 2014;5(18):8790-802.
    • (2014) Oncotarget , vol.5 , Issue.18 , pp. 8790-8802
    • Loher, P.1    Londin, E.R.2    Rigoutsos, I.3
  • 13
    • 84959377931 scopus 로고    scopus 로고
    • Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity
    • Telonis AG, Loher P, Jing Y, Londin E, Rigoutsos I. Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity. Nucleic Acids Res. 2015;43(19):9158-75.
    • (2015) Nucleic Acids Res , vol.43 , Issue.19 , pp. 9158-9175
    • Telonis, A.G.1    Loher, P.2    Jing, Y.3    Londin, E.4    Rigoutsos, I.5
  • 15
    • 84941358900 scopus 로고    scopus 로고
    • Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies
    • Telonis AG, Loher P, Honda S, Jing Y, Palazzo J, Kirino Y, Rigoutsos I. Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies. Oncotarget, 2015;6:24797-822.
    • (2015) Oncotarget , vol.6 , pp. 24797-24822
    • Telonis, A.G.1    Loher, P.2    Honda, S.3    Jing, Y.4    Palazzo, J.5    Kirino, Y.6    Rigoutsos, I.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.