Assessing Lignin Types to Screen Novel Biomass-Degrading Microbial Strains: Synthetic Lignin as Useful Carbon Source

ACS Sustainable Chemistry and Engineering

Volumn 4, Issue 3, 2016, Pages 651-655

  Picart, Pere ^a   Wiermans, Lotte ^a   Pérez Sánchez, María ^a   Grande, Philipp M ^a   Schallmey, Anett ^a,c   Domínguez De María, Pablo ^a,b  

^a RWTH AACHEN UNIVERSITY   (Germany)

^b Sustainable Momentum   (Spain)

^c TECHNICAL UNIVERSITY OF BRAUNSCHWEIG   (Germany)

Author keywords

Biorefineries; Enzymes; Lignin; Microorganisms; Synthetic lignin

Indexed keywords

BIODEGRADATION; CARBON; ENZYMES; MICROORGANISMS; SCREENING; SOIL SURVEYS;

BIOREFINERIES; DEGRADING BACTERIA; DIMETHYL CARBONATE; ISOLATED MICROORGANISMS; LIGNIN DERIVATIVES; MICROBIAL SCREENING; MICROBIAL STRAIN; SYNTHETIC CARBON;

LIGNIN;

BIOMASS; CARBON; ENZYMES; LIGNINS;

EID: 84960118375     PISSN: None     EISSN: 21680485     Source Type: Journal    
DOI: 10.1021/acssuschemeng.5b00961     Document Type: Article

References (32)

1. Bugg, T. D.; Ahmad, M.; Hardiman, E. M.; Singh, R. The emerging role for bacteria in lignin degradation and bio-product formation Curr. Opin. Biotechnol. 2011, 22, 394-400 10.1016/j.copbio.2010.10.009
2. Ragauskas, A. J.; Beckham, G. T.; Biddy, M. J.; Chandra, R.; Chen, F.; Davis, M. F.; Davison, B. H.; Dixon, R. A.; Gilna, P.; Keller, P.; Langan, P.; Naskar, A. K.; Saddler, J. N.; Tschaplinski, T. J.; Tuskan, G. A.; Wyman, C. E. Lignin valorization: Improving lignin processing in the biorefinery Science 2014, 344, 1246843 10.1126/science.1246843
3. Bozell, J. J. Approaches to the selective catalytic conversion of lignin: A grand challenge for biorefinery development Top. Curr. Chem. 2014, 353, 229-255 10.1007/128-2014-535
4. Mathews, S. L.; Pawlak, J.; Grunden, A. M. Bacterial biodegradation and bioconversion of industrial lignocellulosic streams Appl. Microbiol. Biotechnol. 2015, 99, 2939-2954 10.1007/s00253-015-6471-y
5. Gasser, C. A.; Hommes, G.; Schäffer, A.; Corvini, P. F. Multi-catalysis reactions: new prospects and challenges of biotechnology to valorize lignin Appl. Microbiol. Biotechnol. 2012, 95, 1115-1134 10.1007/s00253-012-4178-x
6. Bugg, T.; Ahmad, M.; Hardiman, E.; Rahmanpour, R. Pathways for degradation of lignin in bacteria and fungi Nat. Prod. Rep. 2011, 28, 1883-1896 10.1039/c1np00042j
7. Pollegioni, L.; Tonin, F.; Rosini, E. Lignin-degrading enzymes FEBS J. 2015, 282, 1190-1213 10.1111/febs.13224
8. Chen, Y. R.; Sarkanen, S.; Wang, Y. Y. Lignin-degrading enzyme activities Methods Mol. Biol. 2012, 908, 251-268 10.1007/978-1-61779-956-3-21
9. Chen, Y. H.; Chai, L. Y.; Zhu, Y. H.; Yang, Z. H.; Zheng, Y.; Zhang, H. Biodegradation of kraft lignin by a bacterial strain Comamonas sp. B-9 isolated from eroded bamboo slips J. Appl. Microbiol. 2012, 112, 900-906 10.1111/j.1365-2672.2012.05275.x
10. Bandounas, L.; Wierckx, N. J.; de Winde, J. H.; Ruijssenaars, H. J. Isolation and characterization of novel bacterial strains exhibiting ligninolytic potential BMC Biotechnol. 2011, 11, 94-105 10.1186/1472-6750-11-94
11. Huang, X. F.; Santhanam, N.; Badri, D. V.; Hunter, W. J.; Manter, D. K.; Decker, S. R.; Vivanco, J. R.; Reardon, K. F. Isolation and characterization of lignin-degrading bacteria from rainforest soils Biotechnol. Bioeng. 2013, 110, 1616-1626 10.1002/bit.24833
12. Wiermans, L.; Pérez-Sánchez, M.; Domínguez de María, P. Lipase-mediated oxidative delignification in non-aqueous media: Formation of de-aromatized lignin-oil and cellulase-accessible polysaccharides ChemSusChem 2013, 6, 251-255 10.1002/cssc.201200704
13. Grande, P. M.; Viell, J.; Theyssen, N.; Marquardt, W.; Domínguez de María, P.; Leitner, W. Fractionation of lignocellulosic biomass using the OrganoCat process Green Chem. 2015, 17, 3533-3539 10.1039/C4GC02534B
14. Wiermans, L.; Schumacher, H.; Klaassen, C. M.; Domínguez de María, P. Unprecedented catalyst-free dearomatization with hydrogen peroxide and dimethyl carbonate RSC Adv. 2015, 5, 4009-4018 10.1039/C4RA13113D
15. Liu, Z.; Yang, C.; Qiao, C. Biodegradation of p-nitrophenol and 4-chlorophenol by Stenotrophomonas sp FEMS Microbiol. Lett. 2007, 277, 150-156 10.1111/j.1574-6968.2007.00940.x
16. Manter, D. K.; Hunter, W. J.; Vivanco, J. M. Enterobacter soli sp. nov.: A lignin-degrading γ-proteobacteria isolated from soil Curr. Microbiol. 2011, 62, 1044-1049 10.1007/s00284-010-9809-9
17. Shi, Y.; Chai, L.; Tang, C.; Yang, Z.; Zhang, H.; Chen, R.; Chen, Y.; Zheng, Y. Characterization and genomic analysis of Kraft lignin biodegradation by the β-proteobacterium Cupriavidus basilensis B-8 Biotechnol. Biofuels 2013, 6, 1-14 10.1186/1754-6834-6-1
18. Holt, K. E.; Baker, S.; Weill, F. X.; Holmes, E. C.; Kitchen, A.; Yu, J.; Sangal, V.; Brown, D. J.; Coia, J. E.; Kim, D. W.; Choi, S. Y.; Kim, S. H.; da Silveira, W. D.; Pickard, D. J.; Farrar, J. J.; Parkhill, J.; Dougan, G.; Thomson, N. R. Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe Nat. Genet. 2012, 44, 1056-1059 10.1038/ng.2369
19. Prabhakaran, M.; Couger, M. B.; Jackson, C. A.; Weirick, T.; Fathepure, B. Z. Genome sequences of the lignin-degrading Pseudomonas sp. strain YS-1p and Rhizobium sp. strain YS-1r isolated form decaying wood Genome Announc. 2015, 3, e00019-15 10.1128/genomeA.00019-15
20. Thorenoor, N.; Kim, Y. H.; Lee, C.; Yu, M. H.; Engesser, K. H. A previously uncultured paper mill Propionibacterium is able to degrade O-aryl alkyl ethers and various aromatic hydrocarbons Chemosphere 2009, 75, 1287-1293 10.1016/j.chemosphere.2009.03.032
21. Dhanve, R. S.; Shedbalkar, U. U.; Jadhav, J. P. Biodegradation of diazo reactive dye Navy blue HE2R (Reactive blue 172) by an isolated Exiguobacterium sp. RD3 Biotechnol. Bioprocess Eng. 2008, 13, 53-60 10.1007/s12257-007-0165-y
22. Picart, P.; Müller, C.; Mottweiler, J.; Bolm, C.; Domínguez de María, P.; Schallmey, A.; Wiermans, L. From gene towards selective biomass valorization: Novel bacterial β-etheraes with activity on lignin-like polymers ChemSusChem 2014, 7, 3164-3171 10.1002/cssc.201402465
23. Picart, P.; Sevenich, M.; Domínguez de María, P.; Schallmey, A. Exploring gluthatione lyases as biocatalysts: paving the way for enzymatic lignin depolymerization and future stereoselective applications Green Chem. 2015, 17, 4931-4940 10.1039/C5GC01078K
24. Picart, P.; Domínguez de María, P.; Schallmey, A. From gene to biorefinery: Microbial β-etherases as promising biocatalysts for lignin valorization Front. Microbiol. 2015, 6, 916 10.3389/fmicb.2015.00916
25. Roberts, J. N.; Singh, R.; Grigg, J. C.; Murphy, M. E.; Bugg, T. D. H.; Eltis, L. D. Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1 Biochemistry 2011, 50, 5108-5119 10.1021/bi200427h
26. Ahmad, M.; Roberts, J. N.; Hardiman, E. M.; Singh, R.; Eltis, L. D.; Bugg, T. D. H. Identification of DypB from Rhodococcus jostii RHA1 as a lignin peroxidase Biochemistry 2011, 50, 5096-5107 10.1021/bi101892z
27. Singh, R.; Grigg, J. C.; Qin, W.; Kadla, J. F.; Murphy, M. E.; Eltis, L. D. Improved manganese-oxidizing activity of DypB, a peroxidase from a lignolytic bacterium ACS Chem. Biol. 2013, 8, 700-706 10.1021/cb300608x
28. Archibald, F. S. A new assay for lignin-type peroxidases employing the dye azure B Appl. Environ. Microbiol. 1992, 58, 3110-3116
29. 2+-reduction by phenol derivatives associated with Azure B degradation in Fenton-like reactions Chemosphere 2007, 66, 947-954 10.1016/j.chemosphere.2006.05.067
30. Arora, D. S.; Gill, P. K. Comparison of two assay procedures for lignin peroxidase Enzyme Microb. Technol. 2001, 28, 602-605 10.1016/S0141-0229(01)00302-7
31. Santhanam, N.; Vivanco, J. M.; Decker, S. R.; Reardon, F. Expression of industrially relevant laccases: prokaryotic style Trends Biotechnol. 2011, 29, 480-489 10.1016/j.tibtech.2011.04.005
32. Munk, L.; Sitarz, A. K.; Kalyani, D. C.; Mikkelsen, J. D.; Meyer, A. S. Can laccases catalyze bond cleavage in lignin? Biotechnol. Adv. 2015, 33, 13-24 10.1016/j.biotechadv.2014.12.008