-
1
-
-
60749134643
-
The spike protein of SARS-CoV-A target for vaccine and therapeutic development
-
Du, L. et al. The spike protein of SARS-CoV-a target for vaccine and therapeutic development. Nature Rev. Microbiol. 7, 226-236 (2009).
-
(2009)
Nature Rev. Microbiol.
, vol.7
, pp. 226-236
-
-
Du, L.1
-
2
-
-
84878349946
-
Structure of RSV fusion glycoprotein trimer bound to a prefusion-specific neutralizing antibody
-
McLellan, J. S. et al. Structure of RSV fusion glycoprotein trimer bound to a prefusion-specific neutralizing antibody. Science 340, 1113-1117 (2013).
-
(2013)
Science
, vol.340
, pp. 1113-1117
-
-
McLellan, J.S.1
-
3
-
-
30144436116
-
Structure of the parainfluenza virus 5 F protein in its metastable, prefusion conformation
-
Yin, H. S., Wen, X., Paterson, R. G., Lamb, R. A. & Jardetzky, T. S. Structure of the parainfluenza virus 5 F protein in its metastable, prefusion conformation. Nature 439, 38-44 (2006).
-
(2006)
Nature
, vol.439
, pp. 38-44
-
-
Yin, H.S.1
Wen, X.2
Paterson, R.G.3
Lamb, R.A.4
Jardetzky, T.S.5
-
4
-
-
84899122287
-
Coronaviruses: Important emerging human pathogens
-
Coleman, C. M. & Frieman, M. B. Coronaviruses: important emerging human pathogens. J. Virol. 88, 5209-5212 (2014).
-
(2014)
J. Virol.
, vol.88
, pp. 5209-5212
-
-
Coleman, C.M.1
Frieman, M.B.2
-
5
-
-
0042208243
-
The coronavirus spike protein is a class I virus fusion protein: Structural and functional characterization of the fusion core complex
-
Bosch, B. J., van der Zee, R., de Haan, C. A. & Rottier, P. J. The coronavirus spike protein is a class I virus fusion protein: structural and functional characterization of the fusion core complex. J. Virol. 77, 8801-8811 (2003).
-
(2003)
J. Virol.
, vol.77
, pp. 8801-8811
-
-
Bosch, B.J.1
Van Der-Zee, R.2
De Haan, C.A.3
Rottier, P.J.4
-
6
-
-
84912120721
-
Coronavirus cell entry occurs through the endo-/lysosomal pathway in a proteolysis-dependent manner
-
Burkard, C. et al. Coronavirus cell entry occurs through the endo-/lysosomal pathway in a proteolysis-dependent manner. PLoS Pathog. 10, e1004502 (2014).
-
(2014)
PLoS Pathog.
, vol.10
, pp. e1004502
-
-
Burkard, C.1
-
7
-
-
3142663245
-
Structural basis for coronavirus-mediated membrane fusion. Crystal structure of mouse hepatitis virus spike protein fusion core
-
Xu, Y. et al. Structural basis for coronavirus-mediated membrane fusion. Crystal structure of mouse hepatitis virus spike protein fusion core. J. Biol. Chem. 279, 30514-30522 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 30514-30522
-
-
Xu, Y.1
-
8
-
-
17444401009
-
Central ions and lateral asparagine/glutamine zippers stabilize the post-fusion hairpin conformation of the SARS coronavirus spike glycoprotein
-
Duquerroy, S., Vigouroux, A., Rottier, P. J., Rey, F. A. & Bosch, B. J. Central ions and lateral asparagine/glutamine zippers stabilize the post-fusion hairpin conformation of the SARS coronavirus spike glycoprotein. Virology 335, 276-285 (2005).
-
(2005)
Virology
, vol.335
, pp. 276-285
-
-
Duquerroy, S.1
Vigouroux, A.2
Rottier, P.J.3
Rey, F.A.4
Bosch, B.J.5
-
9
-
-
84888052193
-
Structure of the fusion core and inhibition of fusion by a heptad repeat peptide derived from the S protein of Middle East respiratory syndrome coronavirus
-
Gao, J. et al. Structure of the fusion core and inhibition of fusion by a heptad repeat peptide derived from the S protein of Middle East respiratory syndrome coronavirus. J. Virol. 87, 13134-13140 (2013).
-
(2013)
J. Virol.
, vol.87
, pp. 13134-13140
-
-
Gao, J.1
-
10
-
-
11144237311
-
Structure of a proteolytically resistant core from the severe acute respiratory syndrome coronavirus S2 fusion protein
-
Supekar, V. M. et al. Structure of a proteolytically resistant core from the severe acute respiratory syndrome coronavirus S2 fusion protein. Proc. Natl Acad. Sci. USA 101, 17958-17963 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 17958-17963
-
-
Supekar, V.M.1
-
11
-
-
84881479703
-
Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26
-
Lu, G. et al. Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26. Nature 500, 227-231 (2013).
-
(2013)
Nature
, vol.500
, pp. 227-231
-
-
Lu, G.1
-
12
-
-
24944498409
-
Structure of SARS coronavirus spike receptor-binding domain complexed with receptor
-
Li, F., Li, W., Farzan, M. & Harrison, S. C. Structure of SARS coronavirus spike receptor-binding domain complexed with receptor. Science 309, 1864-1868 (2005).
-
(2005)
Science
, vol.309
, pp. 1864-1868
-
-
Li, F.1
Li, W.2
Farzan, M.3
Harrison, S.C.4
-
13
-
-
79960567167
-
Crystal structure of mouse coronavirus receptor-binding domain complexed with its murine receptor
-
Peng, G. et al. Crystal structure of mouse coronavirus receptor-binding domain complexed with its murine receptor. Proc. Natl Acad. Sci. USA 108, 10696-10701 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 10696-10701
-
-
Peng, G.1
-
14
-
-
73949110051
-
Crystal structure of NL63 respiratory coronavirus receptor-binding domain complexed with its human receptor
-
Wu, K., Li, W., Peng, G. & Li, F. Crystal structure of NL63 respiratory coronavirus receptor-binding domain complexed with its human receptor. Proc. Natl Acad. Sci. USA 106, 19970-19974 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 19970-19974
-
-
Wu, K.1
Li, W.2
Peng, G.3
Li, F.4
-
15
-
-
33746861896
-
Architecture of the SARS coronavirus prefusion spike
-
Beniac, D. R., Andonov, A., Grudeski, E. & Booth, T. F. Architecture of the SARS coronavirus prefusion spike. Nature Struct. Mol. Biol. 13, 751-752 (2006).
-
(2006)
Nature Struct. Mol. Biol.
, vol.13
, pp. 751-752
-
-
Beniac, D.R.1
Andonov, A.2
Grudeski, E.3
Booth, T.F.4
-
16
-
-
84928400353
-
Single-particle cryo-EM at crystallographic resolution
-
Cheng, Y. Single-particle cryo-EM at crystallographic resolution. Cell 161, 450-457 (2015).
-
(2015)
Cell
, vol.161
, pp. 450-457
-
-
Cheng, Y.1
-
17
-
-
84871290676
-
Crystal structure of bovine coronavirus spike protein lectin domain
-
Peng, G. et al. Crystal structure of bovine coronavirus spike protein lectin domain. J. Biol. Chem. 287, 41931-41938 (2012).
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 41931-41938
-
-
Peng, G.1
-
18
-
-
84921777915
-
Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions
-
Brown, A. et al. Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions. Acta Crystallogr. D 71, 136-153 (2015).
-
(2015)
Acta Crystallogr. D
, vol.71
, pp. 136-153
-
-
Brown, A.1
-
19
-
-
84926520440
-
Atomic-accuracy models from 4.5-A cryo-electron microscopy data with density-guided iterative local refinement
-
DiMaio, F. et al. Atomic-accuracy models from 4.5-A cryo-electron microscopy data with density-guided iterative local refinement. Nature Methods 12, 361-365 (2015).
-
(2015)
Nature Methods
, vol.12
, pp. 361-365
-
-
DiMaio, F.1
-
20
-
-
84926516252
-
De novo protein structure determination from near-atomicresolution cryo-EM maps
-
Wang, R. Y. et al. De novo protein structure determination from near-atomicresolution cryo-EM maps. Nature Methods 12, 335-338 (2015).
-
(2015)
Nature Methods
, vol.12
, pp. 335-338
-
-
Wang, R.Y.1
-
21
-
-
0035129841
-
Variations in disparate regions of the murine coronavirus spike protein impact the initiation of membrane fusion
-
Krueger, D. K., Kelly, S. M., Lewicki, D. N., Ruffolo, R. & Gallagher, T. M. Variations in disparate regions of the murine coronavirus spike protein impact the initiation of membrane fusion. J. Virol. 75, 2792-2802 (2001).
-
(2001)
J. Virol.
, vol.75
, pp. 2792-2802
-
-
Krueger, D.K.1
Kelly, S.M.2
Lewicki, D.N.3
Ruffolo, R.4
Gallagher, T.M.5
-
22
-
-
0036147337
-
Soluble receptor potentiates receptor-independent infection by murine coronavirus
-
Taguchi, F. & Matsuyama, S. Soluble receptor potentiates receptor-independent infection by murine coronavirus. J. Virol. 76, 950-958 (2002).
-
(2002)
J. Virol.
, vol.76
, pp. 950-958
-
-
Taguchi, F.1
Matsuyama, S.2
-
23
-
-
67650899039
-
Characterization of a highly conserved domain within the severe acute respiratory syndrome coronavirus spike protein S2 domain with characteristics of a viral fusion peptide
-
Madu, I. G., Roth, S. L., Belouzard, S. & Whittaker, G. R. Characterization of a highly conserved domain within the severe acute respiratory syndrome coronavirus spike protein S2 domain with characteristics of a viral fusion peptide. J. Virol. 83, 7411-7421 (2009).
-
(2009)
J. Virol.
, vol.83
, pp. 7411-7421
-
-
Madu, I.G.1
Roth, S.L.2
Belouzard, S.3
Whittaker, G.R.4
-
24
-
-
84904637027
-
Proteolytic activation of the porcine epidemic diarrhea coronavirus spike fusion protein by trypsin in cell culture
-
Wicht, O. et al. Proteolytic activation of the porcine epidemic diarrhea coronavirus spike fusion protein by trypsin in cell culture. J. Virol. 88, 7952-7961 (2014).
-
(2014)
J. Virol.
, vol.88
, pp. 7952-7961
-
-
Wicht, O.1
-
25
-
-
84909640954
-
Structure and immune recognition of trimeric pre-fusion HIV-1 Env
-
Pancera, M. et al. Structure and immune recognition of trimeric pre-fusion HIV-1 Env. Nature 514, 455-461 (2014).
-
(2014)
Nature
, vol.514
, pp. 455-461
-
-
Pancera, M.1
-
26
-
-
0027400766
-
Identification of an immunodominant linear neutralization domain on the S2 portion of the murine coronavirus spike glycoprotein and evidence that it forms part of complex tridimensional structure
-
Daniel, C. et al. Identification of an immunodominant linear neutralization domain on the S2 portion of the murine coronavirus spike glycoprotein and evidence that it forms part of complex tridimensional structure. J. Virol. 67, 1185-1194 (1993).
-
(1993)
J. Virol.
, vol.67
, pp. 1185-1194
-
-
Daniel, C.1
-
27
-
-
2942647919
-
Identification of an antigenic determinant on the S2 domain of the severe acute respiratory syndrome coronavirus spike glycoprotein capable of inducing neutralizing antibodies
-
Zhang, H. et al. Identification of an antigenic determinant on the S2 domain of the severe acute respiratory syndrome coronavirus spike glycoprotein capable of inducing neutralizing antibodies. J. Virol. 78, 6938-6945 (2004).
-
(2004)
J. Virol.
, vol.78
, pp. 6938-6945
-
-
Zhang, H.1
-
28
-
-
84896315237
-
Proof of principle for epitope-focused vaccine design
-
Correia, B. E. et al. Proof of principle for epitope-focused vaccine design. Nature 507, 201-206 (2014).
-
(2014)
Nature
, vol.507
, pp. 201-206
-
-
Correia, B.E.1
-
29
-
-
84907681989
-
Bat origins of MERS-CoV supported by bat coronavirus HKU4 usage of human receptor CD26
-
Wang, Q. et al. Bat origins of MERS-CoV supported by bat coronavirus HKU4 usage of human receptor CD26. Cell Host Microbe 16, 328-337 (2014).
-
(2014)
Cell Host Microbe
, vol.16
, pp. 328-337
-
-
Wang, Q.1
-
30
-
-
84866168715
-
Structural bases of coronavirus attachment to host aminopeptidase N and its inhibition by neutralizing antibodies
-
Reguera, J. et al. Structural bases of coronavirus attachment to host aminopeptidase N and its inhibition by neutralizing antibodies. PLoS Pathog. 8, e1002859 (2012).
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1002859
-
-
Reguera, J.1
-
31
-
-
0032509096
-
Crystal structure of GCN4-pIQI, a trimeric coiled coil with buried polar residues
-
Eckert, D. M., Malashkevich, V. N. & Kim, P. S. Crystal structure of GCN4-pIQI, a trimeric coiled coil with buried polar residues. J. Mol. Biol. 284, 859-865 (1998).
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 859-865
-
-
Eckert, D.M.1
Malashkevich, V.N.2
Kim, P.S.3
-
32
-
-
48249140239
-
Structure of coronavirus hemagglutinin-esterase offers insight into corona and influenza virus evolution
-
Zeng, Q., Langereis, M. A., van Vliet, A. L., Huizinga, E. G. & de Groot, R. J. Structure of coronavirus hemagglutinin-esterase offers insight into corona and influenza virus evolution. Proc. Natl Acad. Sci. USA 105, 9065-9069 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 9065-9069
-
-
Zeng, Q.1
Langereis, M.A.2
Van Vliet, A.L.3
Huizinga, E.G.4
De Groot, R.J.5
-
33
-
-
79952438103
-
Precise beam-tilt alignment and collimation are required to minimize the phase error associated with coma in high-resolution cryo-EM
-
Glaeser, R. M., Typke, D., Tiemeijer, P. C., Pulokas, J. & Cheng, A. Precise beam-tilt alignment and collimation are required to minimize the phase error associated with coma in high-resolution cryo-EM. J. Struct. Biol. 174, 1-10 (2011).
-
(2011)
J. Struct. Biol.
, vol.174
, pp. 1-10
-
-
Glaeser, R.M.1
Typke, D.2
Tiemeijer, P.C.3
Pulokas, J.4
Cheng, A.5
-
34
-
-
20544468931
-
Automated molecular microscopy: The new Leginon system
-
Suloway, C. et al. Automated molecular microscopy: the new Leginon system. J. Struct. Biol. 151, 41-60 (2005).
-
(2005)
J. Struct. Biol.
, vol.151
, pp. 41-60
-
-
Suloway, C.1
-
35
-
-
84880848354
-
Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM
-
Li, X. et al. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nature Methods 10, 584-590 (2013).
-
(2013)
Nature Methods
, vol.10
, pp. 584-590
-
-
Li, X.1
-
36
-
-
60649103238
-
Appion: An integrated, database-driven pipeline to facilitate em image processing
-
Lander, G. C. et al. Appion: an integrated, database-driven pipeline to facilitate EM image processing. J. Struct. Biol. 166, 95-102 (2009).
-
(2009)
J. Struct. Biol.
, vol.166
, pp. 95-102
-
-
Lander, G.C.1
-
37
-
-
0038441501
-
Accurate determination of local defocus and specimen tilt in electron microscopy
-
Mindell, J. A. & Grigorieff, N. Accurate determination of local defocus and specimen tilt in electron microscopy. J. Struct. Biol. 142, 334-347 (2003).
-
(2003)
J. Struct. Biol.
, vol.142
, pp. 334-347
-
-
Mindell, J.A.1
Grigorieff, N.2
-
38
-
-
63649113687
-
DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy
-
Voss, N. R., Yoshioka, C. K., Radermacher, M., Potter, C. S. & Carragher, B. DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy. J. Struct. Biol. 166, 205-213 (2009).
-
(2009)
J. Struct. Biol.
, vol.166
, pp. 205-213
-
-
Voss, N.R.1
Yoshioka, C.K.2
Radermacher, M.3
Potter, C.S.4
Carragher, B.5
-
39
-
-
84868444740
-
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
-
Scheres, S. H. RELION: implementation of a Bayesian approach to cryo-EM structure determination. J. Struct. Biol. 180, 519-530 (2012).
-
(2012)
J. Struct. Biol.
, vol.180
, pp. 519-530
-
-
Scheres, S.H.1
-
40
-
-
84888059421
-
Optimod-an automated approach for constructing and optimizing initial models for single-particle electron microscopy
-
Lyumkis, D., Vinterbo, S., Potter, C. S. & Carragher, B. Optimod-an automated approach for constructing and optimizing initial models for single-particle electron microscopy. J. Struct. Biol. 184, 417-426 (2013).
-
(2013)
J. Struct. Biol.
, vol.184
, pp. 417-426
-
-
Lyumkis, D.1
Vinterbo, S.2
Potter, C.S.3
Carragher, B.4
-
41
-
-
84878580683
-
Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles
-
Bai, X. C., Fernandez, I. S., McMullan, G. & Scheres, S. H. Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles. eLife 2, e00461 (2013).
-
(2013)
ELife
, vol.2
, pp. e00461
-
-
Bai, X.C.1
Fernandez, I.S.2
McMullan, G.3
Scheres, S.H.4
-
42
-
-
84920942671
-
Beam-induced motion correction for sub-megadalton cryo-EM particles
-
Scheres, S. H. Beam-induced motion correction for sub-megadalton cryo-EM particles. eLife 3, e03665 (2014).
-
(2014)
ELife
, vol.3
, pp. e03665
-
-
Scheres, S.H.1
-
43
-
-
84866078359
-
Prevention of overfitting in cryo-EM structure determination
-
Scheres, S. H. & Chen, S. Prevention of overfitting in cryo-EM structure determination. Nature Methods 9, 853-854 (2012).
-
(2012)
Nature Methods
, vol.9
, pp. 853-854
-
-
Scheres, S.H.1
Chen, S.2
-
44
-
-
84880607763
-
High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy
-
Chen, S. et al. High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy. Ultramicroscopy 135, 24-35 (2013).
-
(2013)
Ultramicroscopy
, vol.135
, pp. 24-35
-
-
Chen, S.1
-
45
-
-
33845345287
-
Visualizing density maps with UCSF Chimera
-
Goddard, T. D., Huang, C. C. & Ferrin, T. E. Visualizing density maps with UCSF Chimera. J. Struct. Biol. 157, 281-287 (2007).
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 281-287
-
-
Goddard, T.D.1
Huang, C.C.2
Ferrin, T.E.3
-
46
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. Features and development of Coot. Acta Crystallogr. D 66, 486-501 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
47
-
-
84885431817
-
High-resolution comparative modeling with RosettaCM
-
Song, Y. et al. High-resolution comparative modeling with RosettaCM. Structure 21, 1735-1742 (2013).
-
(2013)
Structure
, vol.21
, pp. 1735-1742
-
-
Song, Y.1
-
48
-
-
84881282403
-
Cryo-EM model validation using independent map reconstructions
-
DiMaio, F., Zhang, J., Chiu, W. & Baker, D. Cryo-EM model validation using independent map reconstructions. Protein Sci. 22, 865-868 (2013).
-
(2013)
Protein Sci.
, vol.22
, pp. 865-868
-
-
DiMaio, F.1
Zhang, J.2
Chiu, W.3
Baker, D.4
-
49
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D 66, 12-21 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
50
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel, E. & Henrick, K. Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372, 774-797 (2007).
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
51
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L. & Rosenstrom, P. Dali server: conservation mapping in 3D. Nucleic Acids Res. 38, W545-W549 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W545-W549
-
-
Holm, L.1
Rosenstrom, P.2
-
52
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
Corpet, F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16, 10881-10890 (1988).
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 10881-10890
-
-
Corpet, F.1
-
53
-
-
84904790793
-
Deciphering key features in protein structures with the new ENDscript server
-
Robert, X. & Gouet, P. Deciphering key features in protein structures with the new ENDscript server. Nucleic Acids Res. 42, W320-W324 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. W320-W324
-
-
Robert, X.1
Gouet, P.2
|