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Volumn 93, Issue , 2016, Pages 194-203

Complete genome sequence and comparative genome analysis of the Paenibacillus mucilaginosus K02

Author keywords

Comparative genome study; Complete genome sequence; Mineral weathering; Paenibacillus mucilaginosus K02; Phylogenomic analysis

Indexed keywords

CARBONATE DEHYDRATASE; EXOPOLYSACCHARIDE; GENOMIC DNA; BACTERIAL PROTEIN;

EID: 84960090551     PISSN: 08824010     EISSN: 10961208     Source Type: Journal    
DOI: 10.1016/j.micpath.2016.01.016     Document Type: Article
Times cited : (15)

References (33)
  • 1
    • 76849104640 scopus 로고    scopus 로고
    • Transfer of Bacillus mucilaginosus and Bacillus edaphicus to the genus Paenibacillus as Paenibacillus mucilaginosus comb. nov. and Paenibacillus edaphicus comb. nov
    • Hu X., Li S., Wu J., Wang J., Fang Q., Chen J. Transfer of Bacillus mucilaginosus and Bacillus edaphicus to the genus Paenibacillus as Paenibacillus mucilaginosus comb. nov. and Paenibacillus edaphicus comb. nov. Int. J. Syst. Evol. Microbiol. 2010, 60:8-14.
    • (2010) Int. J. Syst. Evol. Microbiol. , vol.60 , pp. 8-14
    • Hu, X.1    Li, S.2    Wu, J.3    Wang, J.4    Fang, Q.5    Chen, J.6
  • 2
    • 63449116119 scopus 로고    scopus 로고
    • Influence of potassium solubilizing microorganism (Bacillus mucilaginosus) and waste mica on potassium uptake dynamics by sudan grass (Sorghum vulgare Pers.) grown under two Alfisols
    • Basak B., Biswas D. Influence of potassium solubilizing microorganism (Bacillus mucilaginosus) and waste mica on potassium uptake dynamics by sudan grass (Sorghum vulgare Pers.) grown under two Alfisols. Plant Soil 2009, 317:235-255.
    • (2009) Plant Soil , vol.317 , pp. 235-255
    • Basak, B.1    Biswas, D.2
  • 3
    • 25844496353 scopus 로고    scopus 로고
    • Application and mechanism of silicate bacterial in agriculture and industry
    • Lian B., Smith D.L., Fu P.Q. Application and mechanism of silicate bacterial in agriculture and industry. Guizhou Sci. 2000, 18:33-43.
    • (2000) Guizhou Sci. , vol.18 , pp. 33-43
    • Lian, B.1    Smith, D.L.2    Fu, P.Q.3
  • 4
    • 84939988094 scopus 로고    scopus 로고
    • Isolation and the interaction between a mineral-weathering Rhizobium tropici Q34 and silicate minerals
    • Wang R.R., Wang Q., He L.Y., Qiu G., Sheng X.F. Isolation and the interaction between a mineral-weathering Rhizobium tropici Q34 and silicate minerals. World J. Microbiol. Biotechnol. 2015, 31:747-753.
    • (2015) World J. Microbiol. Biotechnol. , vol.31 , pp. 747-753
    • Wang, R.R.1    Wang, Q.2    He, L.Y.3    Qiu, G.4    Sheng, X.F.5
  • 5
    • 84907353929 scopus 로고    scopus 로고
    • Production, purification and application of polysaccharide-based bioflocculant by Paenibacillus mucilaginosus
    • Tang J., Qi S., Li Z., An Q., Xie M., Yang B., et al. Production, purification and application of polysaccharide-based bioflocculant by Paenibacillus mucilaginosus. Carbohydr. Polym. 2014, 113:463-470.
    • (2014) Carbohydr. Polym. , vol.113 , pp. 463-470
    • Tang, J.1    Qi, S.2    Li, Z.3    An, Q.4    Xie, M.5    Yang, B.6
  • 6
    • 84859192497 scopus 로고    scopus 로고
    • Isolation of Paenibacillus sp. and assessment of its potential for enhancing mineral weathering
    • Liu D., Lian B., Dong H. Isolation of Paenibacillus sp. and assessment of its potential for enhancing mineral weathering. Geomicrobiol. J. 2012, 29:413-421.
    • (2012) Geomicrobiol. J. , vol.29 , pp. 413-421
    • Liu, D.1    Lian, B.2    Dong, H.3
  • 7
    • 33748307593 scopus 로고    scopus 로고
    • Two phosphate-and potassium-solubilizing bacteria isolated from Tianmu Mountain, Zhejiang, China
    • Hu X., Chen J., Guo J. Two phosphate-and potassium-solubilizing bacteria isolated from Tianmu Mountain, Zhejiang, China. World J. Microbiol. Biotechnol. 2006, 22:983-990.
    • (2006) World J. Microbiol. Biotechnol. , vol.22 , pp. 983-990
    • Hu, X.1    Chen, J.2    Guo, J.3
  • 10
    • 84997769561 scopus 로고    scopus 로고
    • Genome sequence of growth-improving Paenibacillus mucilaginosus strain KNP414
    • Lu J.J., Wang J.F., Hu X.F. Genome sequence of growth-improving Paenibacillus mucilaginosus strain KNP414. Genome Announc. 2013, 1.
    • (2013) Genome Announc. , pp. 1
    • Lu, J.J.1    Wang, J.F.2    Hu, X.F.3
  • 11
    • 84861371638 scopus 로고    scopus 로고
    • Complete genome sequence of Paenibacillus mucilaginosus 3016, a bacterium functional as microbial fertilizer
    • Ma M., Wang Z., Li L., Jiang X., Guan D., Cao F., et al. Complete genome sequence of Paenibacillus mucilaginosus 3016, a bacterium functional as microbial fertilizer. J. Bacteriol. 2012, 194:2777-2778.
    • (2012) J. Bacteriol. , vol.194 , pp. 2777-2778
    • Ma, M.1    Wang, Z.2    Li, L.3    Jiang, X.4    Guan, D.5    Cao, F.6
  • 12
    • 81255124210 scopus 로고    scopus 로고
    • The extracellular secretion of Bacillus mucilaginosus and its capability of releasing potassium from potassium-bearing minerals
    • (in Chinese with English abstract)
    • Du Y., Zhou X.Y., Lian B. The extracellular secretion of Bacillus mucilaginosus and its capability of releasing potassium from potassium-bearing minerals. Earth Sci. Front. 2008, 15:107-111. (in Chinese with English abstract).
    • (2008) Earth Sci. Front. , vol.15 , pp. 107-111
    • Du, Y.1    Zhou, X.Y.2    Lian, B.3
  • 13
    • 84860907482 scopus 로고    scopus 로고
    • Do bacterial secreted proteins play a role in the weathering of potassium-bearing rock powder?
    • Xiao B., Lian B., Shao W. Do bacterial secreted proteins play a role in the weathering of potassium-bearing rock powder?. Geomicrobiol. J. 2012, 29. 10.1080/01490451.2011.581333.
    • (2012) Geomicrobiol. J. , pp. 29
    • Xiao, B.1    Lian, B.2    Shao, W.3
  • 14
    • 79955441379 scopus 로고    scopus 로고
    • Interactions between Bacillus mucilaginosus and silicate minerals (weathered adamellite and feldspar): weathering rate, products, and reaction mechanisms
    • Mo B., Lian B. Interactions between Bacillus mucilaginosus and silicate minerals (weathered adamellite and feldspar): weathering rate, products, and reaction mechanisms. Chin. J. Geochem. 2011, 30:187-192.
    • (2011) Chin. J. Geochem. , vol.30 , pp. 187-192
    • Mo, B.1    Lian, B.2
  • 15
    • 0001279038 scopus 로고
    • Preparation of genomic DNA from bacteria
    • 2.4. 1-2.4. 5
    • Wilson K. Preparation of genomic DNA from bacteria. Curr. Protoc. Mol. Biol. 1987, 2.4. 1-2.4. 5.
    • (1987) Curr. Protoc. Mol. Biol.
    • Wilson, K.1
  • 16
    • 0001361067 scopus 로고    scopus 로고
    • Detection of DNA strand breaks in brown trout (Salmo trutta) hepatocytes and blood cells using the single cell gel electrophoresis (comet) assay
    • Mitchelmore C., Chipman J. Detection of DNA strand breaks in brown trout (Salmo trutta) hepatocytes and blood cells using the single cell gel electrophoresis (comet) assay. Aquat. Toxicol. 1998, 41:161-182.
    • (1998) Aquat. Toxicol. , vol.41 , pp. 161-182
    • Mitchelmore, C.1    Chipman, J.2
  • 17
    • 79951625756 scopus 로고    scopus 로고
    • Genome sequence of poultry pathogen Riemerella anatipestifer strain RA-YM
    • Zhou Z., Peng X., Xiao Y., Wang X., Guo Z., Zhu L., et al. Genome sequence of poultry pathogen Riemerella anatipestifer strain RA-YM. J. Bacteriol. 2011, 193:1284-1285.
    • (2011) J. Bacteriol. , vol.193 , pp. 1284-1285
    • Zhou, Z.1    Peng, X.2    Xiao, Y.3    Wang, X.4    Guo, Z.5    Zhu, L.6
  • 18
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: a tool for genome-scale analysis of protein functions and evolution
    • Tatusov R.L., Galperin M.Y., Natale D.A., Koonin E.V. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 2000, 28:33-36.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 21
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin J., Li R., Raes J., Arumugam M., Burgdorf K.S., Manichanh C., et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010, 464:59-65.
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3    Arumugam, M.4    Burgdorf, K.S.5    Manichanh, C.6
  • 22
    • 77954044098 scopus 로고    scopus 로고
    • A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence
    • Nandi T., Ong C., Singh A.P., Boddey J., Atkins T., Sarkar-Tyson M., et al. A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. PLoS Pathog. 2010, 6:e1000845.
    • (2010) PLoS Pathog. , vol.6 , pp. e1000845
    • Nandi, T.1    Ong, C.2    Singh, A.P.3    Boddey, J.4    Atkins, T.5    Sarkar-Tyson, M.6
  • 23
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 24
    • 59949096873 scopus 로고    scopus 로고
    • EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates
    • Vilella A.J., Severin J., Ureta-Vidal A., Heng L., Durbin R., Birney E. EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res. 2009, 19:327-335.
    • (2009) Genome Res. , vol.19 , pp. 327-335
    • Vilella, A.J.1    Severin, J.2    Ureta-Vidal, A.3    Heng, L.4    Durbin, R.5    Birney, E.6
  • 26
    • 82555190997 scopus 로고    scopus 로고
    • Effect of microbes on karstification in karst ecosystems
    • Lian B., Yuan D., Liu Z. Effect of microbes on karstification in karst ecosystems. Chin. Sci. Bull. 2011, 56:3743-3747.
    • (2011) Chin. Sci. Bull. , vol.56 , pp. 3743-3747
    • Lian, B.1    Yuan, D.2    Liu, Z.3
  • 28
    • 84858311697 scopus 로고    scopus 로고
    • Gene transcription response to weathering of K-bearing minerals by Aspergillus fumigatus
    • Xiao B., Lian B., Shao W., Sun L. Gene transcription response to weathering of K-bearing minerals by Aspergillus fumigatus. Chem. Geol. 2012, 10.1016/j.chemgeo.2012.02.014.
    • (2012) Chem. Geol.
    • Xiao, B.1    Lian, B.2    Shao, W.3    Sun, L.4
  • 29
    • 84916603061 scopus 로고    scopus 로고
    • Feasibility of EPS-producing bacterial inoculation to speed up the sand aggregation in the Gurbantunggut Desert, Northwestern China
    • Wu N., Pan H.X., Qiu D., Zhang Y.M. Feasibility of EPS-producing bacterial inoculation to speed up the sand aggregation in the Gurbantunggut Desert, Northwestern China. J. basic Microbiol. 2014, 54:1378-1386.
    • (2014) J. basic Microbiol. , vol.54 , pp. 1378-1386
    • Wu, N.1    Pan, H.X.2    Qiu, D.3    Zhang, Y.M.4
  • 31
    • 84896547566 scopus 로고    scopus 로고
    • Potassium solubilization by rhizosphere bacteria: influence of nutritional and environmental conditions
    • Parmar P., Sindhu S. Potassium solubilization by rhizosphere bacteria: influence of nutritional and environmental conditions. J. Microbiol. Res. 2013, 3:25-31.
    • (2013) J. Microbiol. Res. , vol.3 , pp. 25-31
    • Parmar, P.1    Sindhu, S.2
  • 33
    • 84912047318 scopus 로고    scopus 로고
    • Diversity of plant growth-promoting Paenibacillus mucilaginosus isolated from vegetable fields in Zhejiang, China
    • Lu J.-J., Xue A.-Q., Cao Z.-Y., Yang S-j, Hu X.-F. Diversity of plant growth-promoting Paenibacillus mucilaginosus isolated from vegetable fields in Zhejiang, China. Ann. Microbiol. 2014, 64:1745-1756.
    • (2014) Ann. Microbiol. , vol.64 , pp. 1745-1756
    • Lu, J.-J.1    Xue, A.-Q.2    Cao, Z.-Y.3    Yang, S.-J.4    Hu, X.-F.5


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