메뉴 건너뛰기




Volumn 32, Issue 2, 2016, Pages 161-164

APTANI: A computational tool to select aptamers through sequence-structure motif analysis of HT-SELEX data

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER;

EID: 84959448720     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv545     Document Type: Article
Times cited : (54)

References (17)
  • 1
    • 84942106089 scopus 로고    scopus 로고
    • FASTAptamer: A bioinformatic toolkit for highthroughput sequence analysis of combinatorial selections
    • Alam, K. K. et al. (2015) FASTAptamer: A bioinformatic toolkit for highthroughput sequence analysis of combinatorial selections. Mol. Ther. Nucleic Acids, 4, e230.
    • (2015) Mol. Ther. Nucleic Acids , vol.4 , pp. e230
    • Alam, K.K.1
  • 2
    • 14044259302 scopus 로고    scopus 로고
    • SELEX: Just another separation?
    • Bowser, M. T. (2005) SELEX: just another separation? Analyst, 130, 128-130.
    • (2005) Analyst , vol.130 , pp. 128-130
    • Bowser, M.T.1
  • 3
    • 0027330888 scopus 로고
    • Using RNAFOLD to predict the activity of small catalytic RNAs
    • Denman, R. B. (1993) Using RNAFOLD to predict the activity of small catalytic RNAs. BioTechniques, 15, 1090-1095.
    • (1993) BioTechniques , vol.15 , pp. 1090-1095
    • Denman, R.B.1
  • 4
    • 84873667430 scopus 로고    scopus 로고
    • High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase
    • Ditzler, M. A. et al. (2013) High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase. Nucleic Acids Res., 41, 1873-1884.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 1873-1884
    • Ditzler, M.A.1
  • 5
    • 34249772381 scopus 로고
    • Fast folding and comparison of RNA secondary structures
    • Hofacker, I. L. et al. (1994) Fast folding and comparison of RNA secondary structures. Monatshefte f. Chemie, 125, 167-188.
    • (1994) Monatshefte F. Chemie , vol.125 , pp. 167-188
    • Hofacker, I.L.1
  • 6
    • 84863528670 scopus 로고    scopus 로고
    • Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers
    • Hoinka, J. et al. (2012) Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers. Bioinformatics, 28, i215-i223.
    • (2012) Bioinformatics , vol.28 , pp. i215-i223
    • Hoinka, J.1
  • 7
    • 84958534867 scopus 로고    scopus 로고
    • AptaCluster-a method to cluster HT-SELEX aptamer pools and lessons from its application
    • Hoinka, J. et al. (2014) AptaCluster-a method to cluster HT-SELEX aptamer pools and lessons from its application. Res. Comput. Mol. Biol., 8394, 115-128.
    • (2014) Res. Comput. Mol. Biol. , vol.8394 , pp. 115-128
    • Hoinka, J.1
  • 8
    • 77955128541 scopus 로고    scopus 로고
    • Aptamers as therapeutics
    • Keefe, A. D. et al. (2010) Aptamers as therapeutics. Nat. Rev. Drug Discov., 9, 537-550.
    • (2010) Nat. Rev. Drug Discov. , vol.9 , pp. 537-550
    • Keefe, A.D.1
  • 9
    • 80054097776 scopus 로고    scopus 로고
    • An RNA aptamer that specifically binds pancreatic adenocarcinoma up-regulated factor inhibits migration and growth of pancreatic cancer cells
    • Kim, Y.-H. et al. (2011) An RNA aptamer that specifically binds pancreatic adenocarcinoma up-regulated factor inhibits migration and growth of pancreatic cancer cells. Cancer Lett., 313, 76-83.
    • (2011) Cancer Lett. , vol.313 , pp. 76-83
    • Kim, Y.-H.1
  • 11
    • 84864953710 scopus 로고    scopus 로고
    • Automated 3D structure composition for large RNAs
    • Popenda, M. et al. (2012) Automated 3D structure composition for large RNAs. Nucleic Acids Res., 40, e112.
    • (2012) Nucleic Acids Res. , vol.40 , pp. e112
    • Popenda, M.1
  • 12
    • 84858202940 scopus 로고    scopus 로고
    • Aptamer-mediated blockade of IL4Ra triggers apoptosis of MDSCs and limits tumor progression
    • Roth, F. et al. (2012) Aptamer-mediated blockade of IL4Ra triggers apoptosis of MDSCs and limits tumor progression. Cancer Res., 72, 1373-1383.
    • (2012) Cancer Res. , vol.72 , pp. 1373-1383
    • Roth, F.1
  • 13
    • 80054078476 scopus 로고    scopus 로고
    • Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
    • Sievers, F. et al. (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol., 7, 539.
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 539
    • Sievers, F.1
  • 14
    • 84866049117 scopus 로고    scopus 로고
    • Rapid identification of cell-specific, internalizing RNA aptamers with bioinformatics analyses of a cell-based aptamer selection
    • Thiel, W. H. et al. (2012) Rapid identification of cell-specific, internalizing RNA aptamers with bioinformatics analyses of a cell-based aptamer selection. PLoS One, 7, e43836.
    • (2012) PLoS One , vol.7 , pp. e43836
    • Thiel, W.H.1
  • 15
    • 84860122883 scopus 로고    scopus 로고
    • G-quadruplex DNA aptamers and their ligands: Structure, function and application
    • Tucker, W. O. et al. (2012) G-quadruplex DNA aptamers and their ligands: structure, function and application. Curr. Pharm. Des., 18, 2014-2026.
    • (2012) Curr. Pharm. Des. , vol.18 , pp. 2014-2026
    • Tucker, W.O.1
  • 16
    • 80052244344 scopus 로고    scopus 로고
    • Aptamers as therapeutics in cardiovascular diseases
    • Wang, P. et al. (2011) Aptamers as therapeutics in cardiovascular diseases. Curr. Med. Chem., 18, 4169-4174.
    • (2011) Curr. Med. Chem. , vol.18 , pp. 4169-4174
    • Wang, P.1
  • 17
    • 0033080745 scopus 로고    scopus 로고
    • Complete suboptimal folding of RNA and the stability of secondary structures
    • Wuchty, S. et al. (1999) Complete suboptimal folding of RNA and the stability of secondary structures. Biopolymers, 49, 145-165.
    • (1999) Biopolymers , vol.49 , pp. 145-165
    • Wuchty, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.