Nucleotide sequence analysis of Vietnamese highly pathogenic porcine reproductive and respiratory syndrome virus from 2013 to 2014 based on the NSP2 and ORF5 coding regions

Archives of Virology

Volumn 161, Issue 3, 2016, Pages 669-675

  Do, Duy Tien ^a,b   Park, Changhoon ^a   Choi, Kyuhyung ^a   Jeong, Jiwoon ^a   Nguyen, Toan Tat ^b   Le, Dung Thi Hanh ^b   Vo, Khoa Minh ^b   Chae, Chanhee ^a  

^a Seoul National University   (South Korea)

^b NONG LAM UNIVERSITY   (Viet Nam)

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; GENETIC MARKER; GLYCOPROTEIN 5, PRRSV; VIRUS ENVELOPE PROTEIN; VIRUS PROTEIN; VIRUS RNA;

ANIMAL; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENE DELETION; GENETIC MARKER; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; PIG; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME VIRUS; SEQUENCE HOMOLOGY; VIET NAM; VIROLOGY;

ANIMALS; ARGININE; CLUSTER ANALYSIS; EVOLUTION, MOLECULAR; GENETIC MARKERS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME; PORCINE RESPIRATORY AND REPRODUCTIVE SYNDROME VIRUS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE DELETION; SEQUENCE HOMOLOGY; SWINE; VIETNAM; VIRAL ENVELOPE PROTEINS; VIRAL NONSTRUCTURAL PROTEINS;

EID: 84959086531     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-015-2699-1     Document Type: Article

References (25)

1. Allende R, Lewis TL, Lu Z, Rock DL, Kutish GF, Ali A, Doster AR, Osorio FA (1999) North American and European porcine reproductive and respiratory syndrome viruses differ in non-structural protein coding regions. J Gen Virol 80:307–315
2. Ansari IH, Kwon B, Osorio FA, Pattnaik AK (2006) Influence of N-linked glycosylation of porcine reproductive and respiratory syndrome virus GP5 on virus infectivity, antigenicity, and ability to induce neutralizing antibodies. J Virol 80:3994–4004
3. An T-Q, Tian Z-J, Leng C-L, Peno J-M, Tong G-Z (2011) Highly pathogenic porcine reproductive and respiratory syndrome virus, Asia. Emerg Infect Dis 17:1782–1784
4. Benfield DA, Nelson E, Collins JE, Harris L, Goyal SM, Robison D, Christianson WT, Morrison RB, Gorcyca D, Chladek D (1992) Characterization of swine infertility and respiratory syndrome (SIRS) virus (isolate ATCC VR-2332). J Vet Diagn Invest 4:127–133
5. Chang C-C, Yoon K-J, Zimmerman JJ, Harmon KM, Dixon PM, Dvorak CMT, Murtaugh MP (2002) Evolution of porcine reproductive and respiratory syndrome virus during sequential passages in pigs. J Virol 76:4750–4763
6. Chen N, Yu X, Wang L, Wu J, Zhou Z, Ni J, Li X, Zhai X, Tian K (2013) Two natural recombinant highly pathogenic porcine reproductive and respiratory syndrome viruses with different pathogenicities. Virus Genes 46:473–478
7. Collins JE, Benfield DA, Christianson WT, Harris L, Hennings JC, Shaw DP, Goyal SM, McCullough S, Morrison RB, Joo HS, Gorcyca D, Chladek D (1992) Isolation of swine infertility and respiratory syndrome virus (isolate ATCC VR-2332) in North America and experimental reproduction of the disease in gnotobiotic pigs. J Vet Diagn Invest 4:117–126
8. Fang Y, Kim D-Y, Roop S, Steen P, Christopher-Hennings J, Nelson EA, Rowland RRR (2004) Heterogeneity in Nsp2 of European-like porcine reproductive and respiratory syndrome viruses isolated in the United States. Virus Res 100:229–235
9. Feng Y, Zhao T, Nguyen T, Inui K, Ma Y, Nguyen TH, Nguyen VC, Liu D, Bui QA, To LT, Wang C, Tian K, Gao GF (2008) Porcine respiratory and reproductive syndrome virus variants, Vietnam and China, 2007. Emerg Infect Dis 14:1774–1776
10. Forsberg R (2005) Divergence time of porcine reproductive and respiratory syndrome virus subtypes. Mol Biol Evol 22:2131–2134
11. Jantafong T, Sangtong P, Saenglub W, Mungkundar C, Romlamduan N, Lekchaeroensuk C, Lekcharoensuk P (2015) Genetic diversity of porcine reproductive and respiratory syndrome virus in Thailand and Southeast Asia from 2008 and 2013. Vet Microbiol 176:229–238
12. Li B, Fang L, Liu S, Jiang Y, Chen H, Xiao S (2014) The genomic and pathogenic characteristics of the highly pathogenic porcine reproductive and respiratory syndrome virus isolate WUH2. ISRN Virol. ISSN:2090–8814. doi:10.1155/2014/624535
13. Liu J-K, Wei C-H, Yang X-Y, Hou X-L, Dai A-L, Li X-H, Wei M-K, Pan X-Z (2013) Genetic diversity and evolutionary characterization of Chinese porcine reproductive and respiratory syndrome viruses based on NSP2 and ORF5. Arch Virol 158:1811–1816
14. Li L, Zhao Q, Ge X, Teng K, Kuang Y, Chen Y, Guo X, Yang H (2012) Chinese highly pathogenic porcine reproductive and respiratory syndrome virus exhibits more extensive tissue tropism for pigs. Virol J 9:203
15. Murtaugh MP, Elam MR, Kakach LT (1995) Comparison of the structural protein coding sequences of the VR-2332 and Lelystad virus strains of the PRRS. Arch Virol 140:1451–1460
16. Murtaugh MP, Stadejek T, Abrahante JE, Lam TTY, Leung FC-C (2010) The ever-expanding diversity of porcine reproductive and respiratory syndrome virus. Virus Res 154:18–30
17. Snijder EJ, Meulenberg JJM (1998) The molecular biology of arteriviruses. J Gen Virol 79:961–979
18. Song J, Shen D, Cui J, Zhao B (2010) Accelerated evolution of PRRSV during recent outbreaks in China. Virus Genes 41:241–245
19. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2(8):2731e9
20. Thompson JD, Higgins DG, Gibson TJ, Clustal W (1994) improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673e80
21. Thuy NTD, Thu NT, Son NG, Ha LT, Hung VK, Nguyen NT, Khoa DVA (2013) Genetic analysis of ORF5 porcine reproductive and respiratory syndrome virus isolated in Vietnam. Microbiol Immunol 57:518–526
22. Tian K, Yu X, Zhao T, Feng Y, Cao Z, Wang C, Hu Y, Chen X, Hu D, Tian X, Liu D, Zhang S, Deng X, Ding Y, Yang L, Zhang Y, Xiao H, Qiao M, Wang B, Hou L, Wang X, Yang X, Kang L, Sun M, Jin P, Wang S, Kitamura Y, Yan J, Gao GF (2007) Emergence of fatal PRRSV variants: unparalleled outbreaks of atypical PRRS in China and molecular dissection of the unique hallmark. PLoS One 2:e526
23. Wesley RD, Mengeling WL, Lager KM, Clouser DF, Landgraf JG, Frey ML (1998) Differentiation of a porcine reproductive and respiratory syndrome virus vaccine strain from North American field strains by restriction fragment length polymorphism analysis of ORF 5. J Vet Diagn Invest 10:140–144
24. Wu J, Li J, Tian F, Ren S, Yu M, Chen J, Lan Z, Zhang X, Yoo D, Wang J (2009) Genetic variation and pathogenicity of highly virulent porcine reproductive and respiratory syndrome virus emerging in China. Arch Virol 154:1589–1597
25. Zhou L, Zhang J, Zeng J, Yin S, Li Y, Zheng L, Guo X, Ge X, Yang H (2009) The 30-amino-acid deletion in the Nsp2 of highly pathogenic porcine reproductive and respiratory syndrome virus emerging in China is not related to its virulence. J Virol 83:5156–5167