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Volumn 6, Issue , 2016, Pages

Selection of highly efficient sgRNAs for CRISPR/Cas9-based plant genome editing

Author keywords

[No Author keywords available]

Indexed keywords

GUIDE RNA; PLANT RNA;

EID: 84959017843     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep21451     Document Type: Article
Times cited : (167)

References (35)
  • 1
    • 84883785822 scopus 로고    scopus 로고
    • Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9
    • Li, J. F. et al. Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat Biotechnol 31, 688-691 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 688-691
    • Li, J.F.1
  • 2
    • 84891932593 scopus 로고    scopus 로고
    • Application of the CRISPR-Cas system for efficient genome engineering in plants
    • Mao, Y. et al. Application of the CRISPR-Cas system for efficient genome engineering in plants. Mol Plant 6, 2008-2011 (2013).
    • (2013) Mol Plant , vol.6 , pp. 2008-2011
    • Mao, Y.1
  • 3
    • 84884962826 scopus 로고    scopus 로고
    • RNA-guided genome editing in plants using a CRISPR-Cas system
    • Xie, K., Yang, Y. RNA-guided genome editing in plants using a CRISPR-Cas system. Mol Plant 6, 1975-1983 (2013).
    • (2013) Mol Plant , vol.6 , pp. 1975-1983
    • Xie, K.1    Yang, Y.2
  • 4
    • 84925262435 scopus 로고    scopus 로고
    • Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system
    • Xie, K., Minkenberg, B., Yang, Y. Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system. Proc Natl Acad Sci USA 112, 3570-3575 (2015).
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 3570-3575
    • Xie, K.1    Minkenberg, B.2    Yang, Y.3
  • 5
    • 84904068340 scopus 로고    scopus 로고
    • Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana
    • Fauser, F., Schiml, S., Puchta, H. Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. Plant J 79, 348-359 (2014).
    • (2014) Plant J , vol.79 , pp. 348-359
    • Fauser, F.1    Schiml, S.2    Puchta, H.3
  • 6
    • 84896924524 scopus 로고    scopus 로고
    • Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis
    • Feng, Z. et al. Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis. Proc Natl Acad Sci USA 111, 4632-4637 (2014).
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. 4632-4637
    • Feng, Z.1
  • 7
    • 84921549293 scopus 로고    scopus 로고
    • Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice
    • Zhou, H., Liu, B., Weeks, D. P., Spalding, M. H., Yang, B. Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice. Nucleic Acids Res 42, 10903-10914 (2014).
    • (2014) Nucleic Acids Res , vol.42 , pp. 10903-10914
    • Zhou, H.1    Liu, B.2    Weeks, D.P.3    Spalding, M.H.4    Yang, B.5
  • 8
    • 84938746255 scopus 로고    scopus 로고
    • Efficient virus-mediated genome editing in plants using the CRISPR/Cas9 system
    • Ali, Z. et al. Efficient virus-mediated genome editing in plants using the CRISPR/Cas9 system. Mol Plant 8, 1288-1291 (2015).
    • (2015) Mol Plant , vol.8 , pp. 1288-1291
    • Ali, Z.1
  • 9
    • 84938748218 scopus 로고    scopus 로고
    • A robustCRISPR/Cas9 system for convenient high-efficiency multiplex genome editing in monocot and dicot plants
    • Ma, X. et al. A robustCRISPR/Cas9 system for convenient high-efficiency multiplex genome editing in monocot and dicot plants. Mol Plant doi: 10.1016/j.molp.2015.04.007 (2015).
    • (2015) Mol Plant
    • Ma, X.1
  • 10
    • 84942908491 scopus 로고    scopus 로고
    • Cas9-guide RNA directed genome editing in soybean
    • Li, Z. et al. Cas9-guide RNA Directed Genome Editing in Soybean. Plant Physiol 169, 960-970 (2015).
    • (2015) Plant Physiol , vol.169 , pp. 960-970
    • Li, Z.1
  • 11
    • 84908584019 scopus 로고    scopus 로고
    • Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated9 system
    • Brooks, C., Nekrasov, V., Lippman, Z. B., Van, Eck. J. Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated9 system. Plant Physiol 166, 1292-1297 (2014).
    • (2014) Plant Physiol , vol.166 , pp. 1292-1297
    • Brooks, C.1    Nekrasov, V.2    Lippman, Z.B.3    Van Eck., J.4
  • 12
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica, F. J., Diéz-Villasenõr, C., Garciá-Martínez, J., Almendros, C. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155, 733-740 (2009).
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.J.1    Diéz-Villasenõr, C.2    Garciá-Martínez, J.3    Almendros, C.4
  • 13
    • 79953250082 scopus 로고    scopus 로고
    • CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
    • Deltcheva, E. et al. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471, 602-607 (2011).
    • (2011) Nature , vol.471 , pp. 602-607
    • Deltcheva, E.1
  • 14
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M. et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337, 816-821 (2012).
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1
  • 15
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L. et al. Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819-823 (2013).
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1
  • 16
    • 84922596582 scopus 로고    scopus 로고
    • CRISPR-P: A web tool for synthetic single-guide RNA design of CRISPR-system in plants
    • Lei, Y. et al. CRISPR-P: a web tool for synthetic single-guide RNA design of CRISPR-system in plants. Mol Plant 7, 1494-1496 (2014).
    • (2014) Mol Plant , vol.7 , pp. 1494-1496
    • Lei, Y.1
  • 17
    • 84899895901 scopus 로고    scopus 로고
    • Genome-wide prediction of highly specific guide RNA spacers for CRISPR-Cas9-Mediated genome editing in model plants and major crops
    • Xie, K., Zhang, J., Yang, Y. Genome-wide prediction of highly specific guide RNA spacers for CRISPR-Cas9-Mediated genome editing in model plants and major crops. Mol Plant 7, 923-926 (2014).
    • (2014) Mol Plant , vol.7 , pp. 923-926
    • Xie, K.1    Zhang, J.2    Yang, Y.3
  • 18
    • 84921540377 scopus 로고    scopus 로고
    • Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation
    • Doench, J. G. et al. Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation. Nat Biotechnol 32, 1262-1267 (2014).
    • (2014) Nat Biotechnol , vol.32 , pp. 1262-1267
    • Doench, J.G.1
  • 19
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang, T., Wei, J. J., Sabatini, D. M., Lander, E. S. Genetic screens in human cells using the CRISPR-Cas9 system. Science 343, 80-84 (2014).
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3    Lander, E.S.4
  • 20
    • 84938829555 scopus 로고    scopus 로고
    • Sequence determinants of improved CRISPR sgRNA design
    • Xu, H. et al. Sequence determinants of improved CRISPR sgRNA design. Genome Res 25, 1147-1157 (2015).
    • (2015) Genome Res , vol.25 , pp. 1147-1157
    • Xu, H.1
  • 21
    • 84902141229 scopus 로고    scopus 로고
    • Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of singleguide RNAs
    • Gagnon, J. A. et al. Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of singleguide RNAs. PLoS One 9, e98186 (2014).
    • (2014) PLoS One , vol.9 , pp. e98186
    • Gagnon, J.A.1
  • 22
    • 84896733529 scopus 로고    scopus 로고
    • Crystal structure of Cas9 in complex with guide RNA and target DNA
    • Nishimasu, H. et al. Crystal structure of Cas9 in complex with guide RNA and target DNA. Cell 156, 935-949 (2014).
    • (2014) Cell , vol.156 , pp. 935-949
    • Nishimasu, H.1
  • 23
    • 85042815594 scopus 로고    scopus 로고
    • Targeted genome modification of crop plants using a CRISPR-Cas system
    • Shan, Q. et al. Targeted genome modification of crop plants using a CRISPR-Cas system. Nat Biotechnol 31, 686-688 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 686-688
    • Shan, Q.1
  • 24
    • 84938739101 scopus 로고    scopus 로고
    • Rapid decoding of sequence-specific nuclease-induced heterozygous and biallelic mutations by direct sequencing of PCR products
    • Ma, X., Chen, L., Zhu, Q., Liu, Y. Rapid decoding of sequence-specific nuclease-induced heterozygous and biallelic mutations by direct sequencing of PCR products. Mol Plant doi: 10.1016/j.molp.2015.02.012 (2015).
    • (2015) Mol Plant
    • Ma, X.1    Chen, L.2    Zhu, Q.3    Liu, Y.4
  • 25
    • 0025375909 scopus 로고
    • U6 snRNA genes of Arabidopsis are transcribed by RNA polymerase III but contain the same two upstream promoter elements as RNA polymerase II-transcribed U-snRNA genes
    • Waibel, F., Filipowicz, W. U6 snRNA genes of Arabidopsis are transcribed by RNA polymerase III but contain the same two upstream promoter elements as RNA polymerase II-transcribed U-snRNA genes. Nucleic Acids Res 18, 3451-3458 (1990).
    • (1990) Nucleic Acids Res , vol.18 , pp. 3451-3458
    • Waibel, F.1    Filipowicz, W.2
  • 26
    • 84938932957 scopus 로고    scopus 로고
    • Efficient inversions and duplications of mammalian regulatory DNA elements and gene clusters by CRISPR/Cas9
    • Li, J. et al. Efficient inversions and duplications of mammalian regulatory DNA elements and gene clusters by CRISPR/Cas9. J Mol Cell Biol 7, 284-298 (2015).
    • (2015) J Mol Cell Biol , vol.7 , pp. 284-298
    • Li, J.1
  • 27
    • 84880570576 scopus 로고    scopus 로고
    • High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells
    • Fu,Y. et al. High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol 31, 822-826 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 822-826
    • Fu, Y.1
  • 28
    • 84884165315 scopus 로고    scopus 로고
    • DNA targeting specificity of RNA-guided Cas9 nucleases
    • Hsu, P. D. et al. DNA targeting specificity of RNA-guided Cas9 nucleases. Nature Biotech 31, 827-832 (2013).
    • (2013) Nature Biotech , vol.31 , pp. 827-832
    • Hsu, P.D.1
  • 29
    • 84902095352 scopus 로고    scopus 로고
    • Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells
    • Wu, X. et al. Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells. Nature Biotech 32, 670-676 (2014).
    • (2014) Nature Biotech , vol.32 , pp. 670-676
    • Wu, X.1
  • 30
    • 84923266604 scopus 로고    scopus 로고
    • GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases
    • Tsai, S. Q. et al. GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases. Nature Biotech 33, 187-197 (2015).
    • (2015) Nature Biotech , vol.33 , pp. 187-197
    • Tsai, S.Q.1
  • 31
    • 84895871173 scopus 로고    scopus 로고
    • DNA interrogation by the CRISPR RNA-guided endonuclease Cas9
    • Sternberg, S. H., Redding, S., Jinek, M., Greene, E. C., Doudna, J. A. DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature 507, 62-67 (2014).
    • (2014) Nature , vol.507 , pp. 62-67
    • Sternberg, S.H.1    Redding, S.2    Jinek, M.3    Greene, E.C.4    Doudna, J.A.5
  • 32
    • 84964313841 scopus 로고    scopus 로고
    • A CRISPR/Cas9 toolkit for multiplex genome editing in plants
    • Xing, H. L. et al. A CRISPR/Cas9 toolkit for multiplex genome editing in plants. BMC Plant Biol 14, 327 (2014).
    • (2014) BMC Plant Biol , vol.14 , pp. 327
    • Xing, H.L.1
  • 33
    • 84942931752 scopus 로고    scopus 로고
    • A CRISPR/Cas9 toolbox for multiplexed plant genome editing and transcriptional regulation
    • Lowder, L. G. et al. A CRISPR/Cas9 toolbox for multiplexed plant genome editing and transcriptional regulation. Plant Physiol 169, 971-985 (2015).
    • (2015) Plant Physiol , vol.169 , pp. 971-985
    • Lowder, L.G.1
  • 34
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31, 3406-3415 (2003).
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 35
    • 0028483231 scopus 로고
    • Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA
    • Hiei, Y., Ohta, S., Komari, T., Kumashiro, T. Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J 6, 271-282 (1994).
    • (1994) Plant J , vol.6 , pp. 271-282
    • Hiei, Y.1    Ohta, S.2    Komari, T.3    Kumashiro, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.