Lysine 206 in Arabidopsis phytochrome A is the major site for ubiquitin-dependent protein degradation

Journal of Biochemistry

Volumn 159, Issue 2, 2015, Pages 161-169

  Rattanapisit, Kaewta ^a   Cho, Man Ho ^a   Bhoo, Seong Hee ^a  

^a Kyung Hee University   (South Korea)

Author keywords

light induced phyA degradation; phytochrome A; proteasome; ubiquitination

Indexed keywords

BENZYLOXYCARBONYLLEUCYLLEUCYLLEUCINAL; LYSINE; MUTANT PROTEIN; PHYTOCHROME A; UBIQUITIN; ARABIDOPSIS PROTEIN; ATP DEPENDENT 26S PROTEASE; PHYA PROTEIN, ARABIDOPSIS; PROTEASOME; TRANSCRIPTION FACTOR; UBIQUITINATED PROTEIN;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ARABIDOPSIS THALIANA; ARTICLE; CONJUGATION; CONTROLLED STUDY; COTYLEDON; DEGRADATION KINETICS; HYPOCOTYL; IMMUNOPRECIPITATION; NONHUMAN; PHOTODEGRADATION; PLANT GROWTH; PROTEIN DEGRADATION; PROTEIN DOMAIN; RED LIGHT; SEEDLING; SEQUENCE ALIGNMENT; SITE DIRECTED MUTAGENESIS; UBIQUITINATION; WESTERN BLOTTING; WILD TYPE; ARABIDOPSIS; CELL NUCLEUS; GENETICS; LIGHT; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE; SIGNAL TRANSDUCTION; TRANSGENIC PLANT;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL NUCLEUS; COTYLEDON; HYPOCOTYL; LIGHT; LYSINE; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PHYTOCHROME A; PLANTS, GENETICALLY MODIFIED; PROTEASOME ENDOPEPTIDASE COMPLEX; PROTEIN STRUCTURE, TERTIARY; PROTEOLYSIS; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS; UBIQUITINATED PROTEINS; UBIQUITINATION; UBIQUITINS;

EID: 84958836660     PISSN: 0021924X     EISSN: 17562651     Source Type: Journal    
DOI: 10.1093/jb/mvv085     Document Type: Article

References (44)

1. Deng, X.W. and Quail, P.H. (1999) Signalling in light-controlled development. Semin. Cell Dev. Biol. 10, 121-129
2. Kami, C., Lorrain, S., Hornitschek, P. and Fankhauser, C. (2010) Light-regulated plant growth and development. Curr. Top. Dev. Biol. 91, 29-66
3. Neff, M.M., Fankhauser, C. and Chory, J. (2000) Light: an indicator of time and place. Genes Dev. 14, 257-271
4. Franklin, K.A., Larner, V.S. and Whitelam, G.C. (2005) The signal transducing photoreceptors of plants. Int. J. Dev. Biol. 49, 653-664
5. Demarsy, E. and Fankhauser, C. (2009) Higher plants use LOV to perceive blue light. Curr. Opin. Plant Biol. 12, 69-74
6. Rizzini, L., Favory, J.J., Cloix, C., Faggionato, D., O'Hara, A., Kaiserli, E., Baumeister, R., Schäfer, E., Nagy, F., Jenkins, G.I. and Ulm, R. (2011) Perception of UV-B by the Arabidopsis UVR8 protein. Science 332, 103-106
7. Franklin, K.A. and Quail, P.H. (2010) Phytochrome functions in Arabidopsis development. J. Exp. Bot. 61, 11-24
8. Strasser, B., Sánchez-Lamas, M., Yanovsky, M.J., Casal, J.J. and Cerdán, P.D. (2010) Arabidopsis thaliana life without phytochromes. Proc. Natl Acad. Sci. USA. 107, 4776-4781
9. Rockwell, N.C., Su, Y.S. and Lagarias, J.C. (2006) Phytochrome structure and signaling mechanisms. Annu. Rev. Plant Biol. 57, 837-858
10. Bae, G. and Choi, G. (2008) Decoding of light signals by plant phytochromes and their interacting proteins. Annu. Rev. Plant Biol. 59, 281-311
11. Sharrock, R.A. and Quail, P.H. (1989) Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family. Genes Dev. 3, 1745-1757
12. Clack, T., Mathews, S. and Sharrock, R.A. (1994) The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE. Plant Mol. Biol. 25, 413-427
13. Sharrock, R.A. and Clack, T. (2002) Patterns of expression and normalized levels of the five Arabidopsis phytochromes. Plant Physiol. 130, 442-456
14. Reed, J.W., Nagpal, P., Poole, D.S., Furuya, M. and Chory, J. (1993) Mutations in the gene for the red/farred light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. Plant Cell 5, 147-157
15. Shinomura, T., Nagatani, A., Hanzawa, H., Kubota, M., Watanabe, M. and Furuya, M. (1996) Action spectra for phytochrome A-and B-specific photoinduction of seed germination in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA. 93, 8129-8133
16. Lorrain, S., Allen, T., Duek, P.D., Whitelam, G.C. and Fankhauser, C. (2008) Phytochrome-mediated inhibition of shade avoidance involves degradation of growthpromoting bHLH transcription factors. Plant J. 53, 312-323
17. Nagatani, A., Reed, J.W. and Chory, J. (1993) Isolation and initial characterization of Arabidopsis mutants that are deficient in phytochrome A. Plant Physiol. 102, 269-277
18. Whitelam, G.C., Johnson, E., Peng, J., Carol, P., Anderson, M.L., Cowl, J.S. and Harberd, N.P. (1993) Phytochrome A null mutants of Arabidopsis display a wild-type phenotype in white light. Plant Cell 5, 757-768
19. Neff, M.M. and Chory, J. (1998) Genetic interactions between phytochrome A, phytochrome B, and crytochrome 1 during Arabidopsis development. Plant Physiol. 118, 27-36
20. Franklin, K.A. and Whitelam, G.C. (2007) Phytochrome A function in red light sensing. Plant Signal. Behav. 2, 383-385
21. Lin, R., Ding, L., Casola, C., Ripoll, D.R., Feschotte, C. and Wang, H. (2007) Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 318, 1302-1305
22. Debrieux, D. and Fankhauser, C. (2010) Light-induced degradation of phyA is promoted by transfer of the photoreceptor into the nucleus. Plant Mol. Biol. 73, 687-695
23. Chen, M. (2008) Phytochrome nuclear body: an emerging model to study interphase nuclear dynamics and signaling. Curr. Opin. Plant Biol. 11, 503-508
24. Toledo-Ortiz, G., Kiryu, Y., Kobayashi, J., Oka, Y., Kim, Y., Nam, H.G., Mochizuki, N. and Nagatani, A. (2010) Subcellular sites of the signal transduction and degradation of phytochrome A. Plant Cell Physiol. 51, 1648-1660
25. Wolf, I., Kircher, S., Fejes, E., Kozma-Bognár, L., Schäfer, E., Nagy, F. and Ádám, E. (2011) Lightregulated nuclear import and degradation of Arabidopsis phytochrome-A N-terminal fragments. Plant Cell Physiol. 52, 361-372
26. Cantón, F.R. and Quail, P.H. (1999) Both phyA and phyB mediate light-imposed repression of PHYA gene expression in Arabidopsis. Plant Physiol. 121, 1207-1215
27. Shanklin, J., Jabben, M. and Vierstra, R.D. (1987) Red light-induced formation of ubiquitin-phytochrome conjugates: identification of possible intermediates of phytochrome degradation. Proc. Natl Acad. Sci. USA. 84, 359-363
28. Jabben, M., Shanklin, J. and Vierstra, R.D. (1989) Red light-induced accumulation of ubiquitin-phytochrome conjugates in both monocot and dicot. Plant Physiol. 90, 380-384
29. Seo, H.S., Watanabe, E., Tokutomi, S., Nagatani, A. and Chua, N.H. (2004) Photoreceptor ubiquitination by COP1 E3 ligase desensitizes phytochrome A signaling. Genes Dev. 18, 617-622
30. Debrieux, D., Trevisan, M. and Fankhauser, C. (2013) Conditional involvement of constitutive photomorphogenic1 in the degradation of phytochrome A. Plant Physiol. 161, 2136-2145
31. Clough, R.C., Jordan-Beebe, E.T., Lohman, K.N., Marita, J.M., Walker, J.M., Gatz, C. and Vierstra, R.D. (1999) Sequences within both the N-and Cterminal domains of phytochrome A are required for PFR ubiquitination and degradation. Plant J. 17, 155-167
32. Oka, Y., Ono, Y., Toledo-Ortiz, G., Kokaji, K., Matsui, M., Mochizuki, N. and Nagatani, A. (2012) Arabidopsis phytochrome A is modularly structured to integrate the multiple features that are required for a highly sensitized phytochrome. Plant Cell 24, 2949-2962
33. Clough, S.J. and Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743
34. Xu, G. and Jaffrey, S.R. (2013) Proteomic Identification of protein ubiquitination events. Biotechnol. Genet. Eng. Rev. 29, 73-109
35. Hau, Z. and Kao, T. (2008) Identification of major lysine residues of S3-RNase of Petunia inflate involved in ubiquitin-26S proteasome-mediated degradation in vitro. Plant J. 54, 1094-1104
36. Parks, B.M. and Quail, P.H. (1993) hy8, a new class of Arabidopsis long hypocotyl mutants deficient in functional phytochrome A. Plant Cell 5, 39-48
37. Casal, J.J., Davis, S.J., Kirchenbauer, D., Viczian, A., Yanovsky, M.J., Clough, R.C., Kircher, S., Jordan-Beebe, E.T., Schäfer, E., Nagy, F. and Vierstra, R.D. (2002) The serine-rich N-terminal domain of oat phytochrome A helps regulate light responses and subnuclear localization of the photoreceptor. Plant Physiol. 129, 1127-1137
38. Cerdán, P.D., Yanovsky, M.J., Reymundo, F.C., Nagatani, A., Staneloni, R.J., Whitelam, G.C. and Casal, J.J. (1999) Regulation of phytochrome B signaling by phytochrome A and FHY1 in Arabidopsis thaliana. Plant J. 18, 499-507
39. Weller, J.L., Batge, S.L., Smith, J.J., Kerckhoffs, L.H.J., Sineshchekov, V.A., Murfet, I.C. and Reid, J.B. (2004) A dominant mutation in the pea PHYA gene confers enhanced responses to light and impairs the lightdependent degradation of phytochrome A. Plant Physiol. 135, 2186-2195
40. Dieterle, M., Bauer, D., Büche, C., Krenz, M., Schäfer, E. and Kretsch, T. (2005) A new type of mutation in phytochrome A causes enhanced light sensitivity and alters the degradation and subcellular partitioning of the photoreceptor. Plant J. 41, 146-161
41. Han, Y.J., Kim, H.S., Kim, Y.M., Shin, A.Y., Lee, S.S., Bhoo, S.H., Song, P.S. and Kim, J.I. (2010) Functional characterization of phytochrome autophosphorylation in plant light signaling. Plant Cell Physiol. 51, 596-609
42. Trupkin, S.A., Debrieux, D., Hiltbrunner, A., Fankhauser, C. and Casal, J.J. (2007) The serine-rich N-terminal region of Arabidopsis phytochrome A is required for protein stability. Plant Mol. Biol. 63, 669-678
43. Mateos, J.L., Luppi, J.P., Ogorodnikova, O.B., Sineshchekov, V.A., Yanovsky, M.J., Braslavsky, S.E., Gärtner, W. and Casal, J.J. (2006) Functional and biochemical analysis of the N-terminal domain of phytochrome A. J. Biol. Chem. 281, 34421-34429
44. Yanovsky, M.J., Luppi, J.P., Kirchbauer, D., Ogorodnikova, O.B., Sineshchekov, V.A., Adam, E., Kircher, S., Staneloni, R.J., Schäfer, E., Nagy, F. and Casal, J.J. (2002) Missense mutation in the PAS2 domain of phytochrome A impairs subnuclear localization and a subset of responses. Plant Cell 14, 1591-1603