Evaluation of a single-reaction method for whole genome sequencing of influenza a virus using next generation sequencing

Biomedical and Environmental Sciences

Volumn 29, Issue 1, 2016, Pages 41-46

  Zou, Xiao Hui ^a   Chen, Wen Bing ^a   Zhao, Xiang ^a   Zhu, Wen Fei ^a   Yang, Lei ^a   Wang, Da Yan ^a   Shu, Yue Long ^a  

^a BEIJING HOSPITAL   (China)

Author keywords

Influenza A virus; NGS; Whole genome sequencing

Indexed keywords

VIRUS RNA;

GENETIC VARIATION; GENETICS; INFLUENZA A VIRUS; PROCEDURES; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS GENOME;

GENETIC VARIATION; GENOME, VIRAL; INFLUENZA A VIRUS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL;

EID: 84958787227     PISSN: 08953988     EISSN: None     Source Type: Journal    
DOI: 10.3967/bes2016.004     Document Type: Article

References (12)

1. R Gao, B Cao, Y Hu et al. Human infection with a novel avian-origin influenza A (H7N9) virus N Engl J Med 368 2013 1888 1897
2. E Hoffmann, J Stech, Y Guan et al. Universal primer set for the full-length amplification of all influenza A viruses Arch Virol 146 2001 2275 2289
3. B Zhou, ME Donnelly, DT Scholes et al. Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses J Virol 83 2009 10309 10313
4. V Bourret, G Croville, J Mariette et al. Whole-genome, deep pyrosequencing analysis of a duck influenza A virus evolution in swine cells Infect Genet Evol 18 2013 31 41
5. D Hoper, B Hoffmann, M Beer A comprehensive deep sequencing strategy for full-length genomes of influenza A PLoS One 6 2011 e19075
6. TT Lam, B Zhou, J Wang et al. Dissemination, divergence and establishment of H7N9 influenza viruses in China Nature 522 2015 102 105
7. E Hoffmann, G Neumann, Y Kawaoka et al. A DNA transfection system for generation of influenza A virus from eight plasmids Proc Natl Acad Sci U S A 97 2000 6108 6113
8. B Zhou, DE Wentworth Influenza A virus molecular virology techniques Methods Mol Biol 865 2012 175 192
9. RG Webster, EA Govorkova Continuing challenges in influenza Ann N Y Acad Sci 1323 2014 115 139
10. X Ren, F Yang, Y Hu et al. Full genome of influenza A (H7N9) virus derived by direct sequencing without culture Emerg Infect Dis 19 2013 1881 1884
11. M Pan, R Gao, Q Lv et al. Human infection with a novel highly pathogenic avian influenza A (H5N6) virus: virological and clinical findings J Infect 72 2015 52 59
12. D Wang, G Tang, Y Huang et al. A returning migrant worker with avian influenza A (H7N9) virus infection in Guizhou, China: a case report J Med Case Rep 9 2015 109