Non-random chromosome arrangement in triploid endosperm nuclei

Chromosoma

Volumn 126, Issue 1, 2017, Pages 115-124

  Baroux, Célia ^a   Pecinka, Ales ^b,c   Fuchs, Jörg ^b   Kreth, Gregor ^d   Schubert, Ingo ^b   Grossniklaus, Ueli ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

^b LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^c MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^d UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

Arabidopsis; Centromere; Chromocenter; Chromosome association; Endosperm; Parent of origin effect

Indexed keywords

ARABIDOPSIS THALIANA; ARTICLE; CENTROMERE; CHROMOSOME STRUCTURE; ENDOSPERM; HETEROCHROMATIN; KARYOTYPE; NONHUMAN; PLANT CHROMOSOME; PLANT GENOME; TRIPLOIDY; ARABIDOPSIS; CELL NUCLEUS; GENE DOSAGE; GENE TRANSLOCATION; GENETICS; PLANT SEED;

ARABIDOPSIS; CELL NUCLEUS; CENTROMERE; CHROMOSOMES, PLANT; ENDOSPERM; GENE DOSAGE; GENOME, PLANT; SEEDS; TRANSLOCATION, GENETIC; TRIPLOIDY;

EID: 84958778303     PISSN: 00095915     EISSN: 14320886     Source Type: Journal    
DOI: 10.1007/s00412-016-0578-5     Document Type: Article

References (43)

1. Andrey P, Kieu K, Kress C, Lehmann G, Tirichine L, Liu Z, Biot E, Adenot PG, Hue-Beauvais C, Houba-Herin N, Duranthon V, Devinoy E, Beaujean N, Gaudin V, Maurin Y, Debey P (2010) Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei. PLoS Comput Biol 6, e1000853
2. Armstrong SJ, Franklin FC, Jones GH (2001) Nucleolus-associated telomere clustering and pairing precede meiotic chromosome synapsis in Arabidopsis thaliana. J Cell Sci 114:4207–4217
3. Baroux C, Spillane C, Grossniklaus U (2002) Genomic imprinting during seed development. Adv Genet 46:165–214
4. Baroux C, Pecinka A, Fuchs J, Schubert I, Grossniklaus U (2007) The triploid endosperm genome of Arabidopsis adopts a peculiar, parental-dosage-dependent chromatin organization. Plant Cell 19:1782–1794
5. Bauer MJ, Birchler JA (2006) Organization of endoreduplicated chromosomes in the endosperm of Zea mays L. Chromosoma 115:383–394
6. Bemer M, Grossniklaus U (2012) Dynamic regulation of Polycomb group activity during plant development. Curr Opin Plant Biol 15:523–529
7. Birchler JA (1993) Dosage analysis of maize endosperm development. Annu Rev Genet 27:181–204
8. Birchler JA (2014) Interploidy hybridization barrier of endosperm as a dosage interaction. Front Plant Sci 5:281
9. Birchler JA, Bhadra U, Bhadra MP, Auger DL (2001) Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits. Dev Biol 234:275–288
10. Cremer T, Cremer M (2010) Chromosome territories. Cold Spring Harbor Perspect Biol 2, a003889
11. de Nooijer S, Wellink J, Mulder B, Bisseling T (2009) Non-specific interactions are sufficient to explain the position of heterochromatic chromocenters and nucleoli in interphase nuclei. Nucleic Acids Res 37:3558–3568
12. Del Prete S, Arpon J, Sakai K, Andrey P, Gaudin V (2014) Nuclear architecture and chromatin dynamics in interphase nuclei of Arabidopsis thaliana. Cytogenet Genome Res 143:28–50
13. Dilkes BP, Comai L (2004) A differential dosage hypothesis for parental effects in seed development. Plant Cell 16:3174–3180
14. Fang Y, Spector DL (2005) Centromere positioning and dynamics in living Arabidopsis plants. Mol Biol Cell 16:5710–5718
15. Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE (2014) Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. Mol Cell 55:694–707
16. Fransz P, De Jong JH, Lysak M, Castiglione MR, Schubert I (2002) Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate. Proc Natl Acad Sci U S A 99:14584–14589
17. Fransz P, ten Hoopen R, Tessadori F (2006) Composition and formation of heterochromatin in Arabidopsis thaliana. Chromosome Res 14:71–82
18. Galili G, Levy AA, Feldman M (1986) Gene-dosage compensation of endosperm proteins in hexaploid wheat Triticum aestivum. Proc Natl Acad Sci U S A 83:6524–6528
19. Gehring M, Bubb KL, Henikoff S (2009) Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 324:1447–1451
20. Grob S, Schmid MW, Luedtke NW, Wicker T, Grossniklaus U (2013) Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture. Genome Biol 14:R129
21. Grob S, Schmid MW, Grossniklaus U (2014) Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila. Mol Cell 55:678–693
22. Gutierrez-Marcos JF, Pennington PD, Costa LM, Dickinson HG (2003) Imprinting in the endosperm: a possible role in preventing wide hybridization. Philos Trans R Soc Lond B Biol Sci 358:1105–1111
23. Henry IM, Dilkes BP, Comai L (2007) Genetic basis for dosage sensitivity in Arabidopsis thaliana. PLoS Genet 3, e70
24. Ingouff M, Hamamura Y, Gourgues M, Higashiyama T, Berger F (2007) Distinct dynamics of HISTONE3 variants between the two fertilization products in plants. Curr Biol: CB 17:1032–1037
25. Ishikawa R, Kinoshita T (2009) Epigenetic programming: the challenge to species hybridization. Mol Plant 2:589–599
26. Köhler C, Kradolfer D (2011) Epigenetic mechanisms in the endosperm and their consequences for the evolution of flowering plants. Biochim Biophys Acta 1809:438–443
27. Köhler C, Lafon-Placette C (2015) Evolution and function of epigenetic processes in the endosperm. Front Plant Sci 6:130
28. Lafon-Placette C, Kohler C (2014) Epigenetic mechanisms of postzygotic reproductive isolation in plants. Curr Opin Plant Biol 23C:39–44
29. Larkins BA, Dilkes BP, Dante RA, Coelho CM, Woo YM, Liu Y (2001) Investigating the hows and whys of DNA endoreduplication. J Exp Bot 52:183–192
30. Li J, Berger F (2012) Endosperm: food for humankind and fodder for scientific discoveries. New Phytol 195:290–305
31. McKee BD (2004) Homologous pairing and chromosome dynamics in meiosis and mitosis. Biochim Biophys Acta 1677:165–180
32. Ou J, Guo Z, Shi J, Wang X, Liu J, Shi B, Guo F, Zhang C, Yang D (2014) Transgenic rice endosperm as a bioreactor for molecular pharming. Plant Cell Rep 33:585–594
33. Pecinka A, Schubert V, Meister A, Kreth G, Klatte M, Lysak MA, Fuchs J, Schubert I (2004) Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes. Chromosoma 113:258–269
34. Ravi M, Shibata F, Ramahi JS, Nagaki K, Chen C, Murata M, Chan SW (2011) Meiosis-specific loading of the centromere-specific histone CENH3 in Arabidopsis thaliana. PLoS Genet 7, e1002121
35. Rosa A, Everaers R (2008) Structure and dynamics of interphase chromosomes. PLoS Comput Biol 4, e1000153
36. Schatlowski N, Kohler C (2012) Tearing down barriers: understanding the molecular mechanisms of interploidy hybridizations. J Exp Bot 63:6059–6067
37. Schubert I, Shaw P (2011) Organization and dynamics of plant interphase chromosomes. Trends Plant Sci 16:273–281
38. Schubert V, Klatte M, Pecinka A, Meister A, Jasencakova Z, Schubert I (2006) Sister chromatids are often incompletely aligned in meristematic and endopolyploid interphase nuclei of Arabidopsis thaliana. Genetics 172:467–475
39. Schubert V, Berr A, Meister A (2012) Interphase chromatin organisation in Arabidopsis nuclei: constraints versus randomness. Chromosoma 121:369–387
40. Tanabe H, Habermann FA, Solovei I, Cremer M, Cremer T (2002) Non-random radial arrangements of interphase chromosome territories: evolutionary considerations and functional implications. Mutat Res 504:37–45
41. van Driel R, Fransz P (2004) Nuclear architecture and genome functioning in plants and animals: what can we learn from both? Exp Cell Res 296:86–90
42. Wang C, Liu C, Roqueiro D, Grimm D, Schwab R, Becker C, Lanz C, Weigel D (2015) Genome-wide analysis of local chromatin packing in Arabidopsis thaliana. Genome Res 25:246–256
43. Wegel E, Shaw PJ (2005) Chromosome organization in wheat endosperm and embryo. Cytogenet Genome Res 109:175–180