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Volumn 61, Issue 6, 2016, Pages 821-833

Distal Alternative Last Exons Localize mRNAs to Neural Projections

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RNA BINDING PROTEIN; TRANSCRIPTOME; DNA BINDING PROTEIN; ISOPROTEIN; MBNL1 PROTEIN, MOUSE; MBNL2 PROTEIN, MOUSE;

EID: 84958581018     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2016.01.020     Document Type: Article
Times cited : (190)

References (51)
  • 1
    • 28544440718 scopus 로고    scopus 로고
    • RNA-dependent integrin α3 protein localization regulated by the Muscleblind-like protein MLP1
    • Adereth Y., Dammai V., Kose N., Li R., Hsu T. RNA-dependent integrin α3 protein localization regulated by the Muscleblind-like protein MLP1. Nat. Cell Biol. 2005, 7:1240-1247.
    • (2005) Nat. Cell Biol. , vol.7 , pp. 1240-1247
    • Adereth, Y.1    Dammai, V.2    Kose, N.3    Li, R.4    Hsu, T.5
  • 3
    • 69549135202 scopus 로고    scopus 로고
    • To localize or not to localize: mRNA fate is in 3'UTR ends
    • Andreassi C., Riccio A. To localize or not to localize: mRNA fate is in 3'UTR ends. Trends Cell Biol. 2009, 19:465-474.
    • (2009) Trends Cell Biol. , vol.19 , pp. 465-474
    • Andreassi, C.1    Riccio, A.2
  • 6
    • 84930052197 scopus 로고    scopus 로고
    • Alternative 3' UTRs act as scaffolds to regulate membrane protein localization
    • Berkovits B.D., Mayr C. Alternative 3' UTRs act as scaffolds to regulate membrane protein localization. Nature 2015, 522:363-367.
    • (2015) Nature , vol.522 , pp. 363-367
    • Berkovits, B.D.1    Mayr, C.2
  • 8
    • 79952227406 scopus 로고    scopus 로고
    • Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons
    • Buckley P.T., Lee M.T., Sul J.-Y., Miyashiro K.Y., Bell T.J., Fisher S.A., Kim J., Eberwine J. Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons. Neuron 2011, 69:877-884.
    • (2011) Neuron , vol.69 , pp. 877-884
    • Buckley, P.T.1    Lee, M.T.2    Sul, J.-Y.3    Miyashiro, K.Y.4    Bell, T.J.5    Fisher, S.A.6    Kim, J.7    Eberwine, J.8
  • 9
    • 84892902609 scopus 로고    scopus 로고
    • Single β-actin mRNA detection in neurons reveals a mechanism for regulating its translatability
    • Buxbaum A.R., Wu B., Singer R.H. Single β-actin mRNA detection in neurons reveals a mechanism for regulating its translatability. Science 2014, 343:419-422.
    • (2014) Science , vol.343 , pp. 419-422
    • Buxbaum, A.R.1    Wu, B.2    Singer, R.H.3
  • 10
    • 84860661767 scopus 로고    scopus 로고
    • The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging
    • Cajigas I.J., Tushev G., Will T.J., tom Dieck S., Fuerst N., Schuman E.M. The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging. Neuron 2012, 74:453-466.
    • (2012) Neuron , vol.74 , pp. 453-466
    • Cajigas, I.J.1    Tushev, G.2    Will, T.J.3    tom Dieck, S.4    Fuerst, N.5    Schuman, E.M.6
  • 11
    • 84864912095 scopus 로고    scopus 로고
    • Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy
    • Charizanis K., Lee K.-Y., Batra R., Goodwin M., Zhang C., Yuan Y., Shiue L., Cline M., Scotti M.M., Xia G., et al. Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy. Neuron 2012, 75:437-450.
    • (2012) Neuron , vol.75 , pp. 437-450
    • Charizanis, K.1    Lee, K.-Y.2    Batra, R.3    Goodwin, M.4    Zhang, C.5    Yuan, Y.6    Shiue, L.7    Cline, M.8    Scotti, M.M.9    Xia, G.10
  • 12
    • 41149149041 scopus 로고    scopus 로고
    • The functional consequences of alternative promoter use in mammalian genomes
    • Davuluri R.V., Suzuki Y., Sugano S., Plass C., Huang T.H. The functional consequences of alternative promoter use in mammalian genomes. Trends Genet. 2008, 24:167-177.
    • (2008) Trends Genet. , vol.24 , pp. 167-177
    • Davuluri, R.V.1    Suzuki, Y.2    Sugano, S.3    Plass, C.4    Huang, T.H.5
  • 13
    • 80052979140 scopus 로고    scopus 로고
    • Mechanisms and consequences of alternative polyadenylation
    • Di Giammartino D.C., Nishida K., Manley J.L. Mechanisms and consequences of alternative polyadenylation. Mol. Cell 2011, 43:853-866.
    • (2011) Mol. Cell , vol.43 , pp. 853-866
    • Di Giammartino, D.C.1    Nishida, K.2    Manley, J.L.3
  • 14
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • Emanuelsson O., Brunak S., von Heijne G., Nielsen H. Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2007, 2:953-971.
    • (2007) Nat. Protoc. , vol.2 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 15
    • 0025826161 scopus 로고
    • Oskar organizes the germ plasm and directs localization of the posterior determinant nanos
    • Ephrussi A., Dickinson L.K., Lehmann R. Oskar organizes the germ plasm and directs localization of the posterior determinant nanos. Cell 1991, 66:37-50.
    • (1991) Cell , vol.66 , pp. 37-50
    • Ephrussi, A.1    Dickinson, L.K.2    Lehmann, R.3
  • 17
    • 84861316338 scopus 로고    scopus 로고
    • Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA
    • Ghosh S., Marchand V., Gáspár I., Ephrussi A. Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA. Nat. Struct. Mol. Biol. 2012, 19:441-449.
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 441-449
    • Ghosh, S.1    Marchand, V.2    Gáspár, I.3    Ephrussi, A.4
  • 20
    • 84889641214 scopus 로고    scopus 로고
    • IB4-binding sensory neurons in the adult rat express a novel 3' UTR-extended isoform of CaMK4 that is associated with its localization to axons
    • Harrison B.J., Flight R.M., Gomes C., Venkat G., Ellis S.R., Sankar U., Twiss J.L., Rouchka E.C., Petruska J.C. IB4-binding sensory neurons in the adult rat express a novel 3' UTR-extended isoform of CaMK4 that is associated with its localization to axons. J. Comp. Neurol. 2014, 522:308-336.
    • (2014) J. Comp. Neurol. , vol.522 , pp. 308-336
    • Harrison, B.J.1    Flight, R.M.2    Gomes, C.3    Venkat, G.4    Ellis, S.R.5    Sankar, U.6    Twiss, J.L.7    Rouchka, E.C.8    Petruska, J.C.9
  • 21
    • 66049104920 scopus 로고    scopus 로고
    • Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
    • Ji Z., Lee J.Y., Pan Z., Jiang B., Tian B. Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development. Proc. Natl. Acad. Sci. USA 2009, 106:7028-7033.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 7028-7033
    • Ji, Z.1    Lee, J.Y.2    Pan, Z.3    Jiang, B.4    Tian, B.5
  • 23
    • 70450203364 scopus 로고    scopus 로고
    • Pathogenic mechanisms of myotonic dystrophy
    • Lee J.E., Cooper T.A. Pathogenic mechanisms of myotonic dystrophy. Biochem. Soc. Trans. 2009, 37:1281-1286.
    • (2009) Biochem. Soc. Trans. , vol.37 , pp. 1281-1286
    • Lee, J.E.1    Cooper, T.A.2
  • 24
    • 33749031843 scopus 로고    scopus 로고
    • Asymmetrical beta-actin mRNA translation in growth cones mediates attractive turning to netrin-1
    • Leung K.-M., van Horck F.P.G., Lin A.C., Allison R., Standart N., Holt C.E. Asymmetrical beta-actin mRNA translation in growth cones mediates attractive turning to netrin-1. Nat. Neurosci. 2006, 9:1247-1256.
    • (2006) Nat. Neurosci. , vol.9 , pp. 1247-1256
    • Leung, K.-M.1    van Horck, F.P.G.2    Lin, A.C.3    Allison, R.4    Standart, N.5    Holt, C.E.6
  • 25
    • 84930331173 scopus 로고    scopus 로고
    • Systematic profiling of poly(A)+ transcripts modulated by core 3' end processing and splicing factors reveals regulatory rules of alternative cleavage and polyadenylation
    • Li W., You B., Hoque M., Zheng D., Luo W., Ji Z., Park J.Y., Gunderson S.I., Kalsotra A., Manley J.L., Tian B. Systematic profiling of poly(A)+ transcripts modulated by core 3' end processing and splicing factors reveals regulatory rules of alternative cleavage and polyadenylation. PLoS Genet. 2015, 11:e1005166.
    • (2015) PLoS Genet. , vol.11
    • Li, W.1    You, B.2    Hoque, M.3    Zheng, D.4    Luo, W.5    Ji, Z.6    Park, J.Y.7    Gunderson, S.I.8    Kalsotra, A.9    Manley, J.L.10    Tian, B.11
  • 26
    • 60149086205 scopus 로고    scopus 로고
    • MRNA localization: gene expression in the spatial dimension
    • Martin K.C., Ephrussi A. mRNA localization: gene expression in the spatial dimension. Cell 2009, 136:719-730.
    • (2009) Cell , vol.136 , pp. 719-730
    • Martin, K.C.1    Ephrussi, A.2
  • 28
    • 68749113985 scopus 로고    scopus 로고
    • Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells
    • Mayr C., Bartel D.P. Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. Cell 2009, 138:673-684.
    • (2009) Cell , vol.138 , pp. 673-684
    • Mayr, C.1    Bartel, D.P.2
  • 29
    • 84871436996 scopus 로고    scopus 로고
    • Evolutionary dynamics of gene and isoform regulation in Mammalian tissues
    • Merkin J., Russell C., Chen P., Burge C.B. Evolutionary dynamics of gene and isoform regulation in Mammalian tissues. Science 2012, 338:1593-1599.
    • (2012) Science , vol.338 , pp. 1593-1599
    • Merkin, J.1    Russell, C.2    Chen, P.3    Burge, C.B.4
  • 30
    • 43049100759 scopus 로고    scopus 로고
    • Genome-wide screen reveals APC-associated RNAs enriched in cell protrusions
    • Mili S., Moissoglu K., Macara I.G. Genome-wide screen reveals APC-associated RNAs enriched in cell protrusions. Nature 2008, 453:115-119.
    • (2008) Nature , vol.453 , pp. 115-119
    • Mili, S.1    Moissoglu, K.2    Macara, I.G.3
  • 31
    • 84893776968 scopus 로고    scopus 로고
    • Subcellular transcriptomics-dissection of the mRNA composition in the axonal compartment of sensory neurons
    • Minis A., Dahary D., Manor O., Leshkowitz D., Pilpel Y., Yaron A. Subcellular transcriptomics-dissection of the mRNA composition in the axonal compartment of sensory neurons. Dev. Neurobiol. 2014, 74:365-381.
    • (2014) Dev. Neurobiol. , vol.74 , pp. 365-381
    • Minis, A.1    Dahary, D.2    Manor, O.3    Leshkowitz, D.4    Pilpel, Y.5    Yaron, A.6
  • 32
  • 35
    • 33845807365 scopus 로고    scopus 로고
    • Identification of process-localized mRNAs from cultured rodent hippocampal neurons
    • Poon M.M., Choi S.-H., Jamieson C.A.M., Geschwind D.H., Martin K.C. Identification of process-localized mRNAs from cultured rodent hippocampal neurons. J. Neurosci. 2006, 26:13390-13399.
    • (2006) J. Neurosci. , vol.26 , pp. 13390-13399
    • Poon, M.M.1    Choi, S.-H.2    Jamieson, C.A.M.3    Geschwind, D.H.4    Martin, K.C.5
  • 36
    • 80052447253 scopus 로고    scopus 로고
    • Ending the message: poly(A) signals then and now
    • Proudfoot N.J. Ending the message: poly(A) signals then and now. Genes Dev. 2011, 25:1770-1782.
    • (2011) Genes Dev. , vol.25 , pp. 1770-1782
    • Proudfoot, N.J.1
  • 37
    • 74549125753 scopus 로고    scopus 로고
    • An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data
    • Ramsköld D., Wang E.T., Burge C.B., Sandberg R. An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data. PLoS Comput. Biol. 2009, 5:e1000598.
    • (2009) PLoS Comput. Biol. , vol.5
    • Ramsköld, D.1    Wang, E.T.2    Burge, C.B.3    Sandberg, R.4
  • 39
    • 46249092601 scopus 로고    scopus 로고
    • Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites
    • Sandberg R., Neilson J.R., Sarma A., Sharp P.A., Burge C.B. Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites. Science 2008, 320:1643-1647.
    • (2008) Science , vol.320 , pp. 1643-1647
    • Sandberg, R.1    Neilson, J.R.2    Sarma, A.3    Sharp, P.A.4    Burge, C.B.5
  • 42
    • 84890494960 scopus 로고    scopus 로고
    • 3' UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts
    • Spies N., Burge C.B., Bartel D.P. 3' UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts. Genome Res. 2013, 23:2078-2090.
    • (2013) Genome Res. , vol.23 , pp. 2078-2090
    • Spies, N.1    Burge, C.B.2    Bartel, D.P.3
  • 44
    • 0032246188 scopus 로고    scopus 로고
    • Levels of polyadenylation factor CstF-64 control IgM heavy chain mRNA accumulation and other events associated with B cell differentiation
    • Takagaki Y., Manley J.L. Levels of polyadenylation factor CstF-64 control IgM heavy chain mRNA accumulation and other events associated with B cell differentiation. Mol. Cell 1998, 2:761-771.
    • (1998) Mol. Cell , vol.2 , pp. 761-771
    • Takagaki, Y.1    Manley, J.L.2
  • 46
    • 84862644065 scopus 로고    scopus 로고
    • RNA-binding proteins involved in RNA localization and their implications in neuronal diseases
    • Tolino M., Köhrmann M., Kiebler M.A. RNA-binding proteins involved in RNA localization and their implications in neuronal diseases. Eur. J. Neurosci. 2012, 35:1818-1836.
    • (2012) Eur. J. Neurosci. , vol.35 , pp. 1818-1836
    • Tolino, M.1    Köhrmann, M.2    Kiebler, M.A.3
  • 49
    • 0032726498 scopus 로고    scopus 로고
    • Different 3' untranslated regions target alternatively processed hu-li tai shao (hts) transcripts to distinct cytoplasmic locations during Drosophila oogenesis
    • Whittaker K.L., Ding D., Fisher W.W., Lipshitz H.D. Different 3' untranslated regions target alternatively processed hu-li tai shao (hts) transcripts to distinct cytoplasmic locations during Drosophila oogenesis. J. Cell Sci. 1999, 112:3385-3398.
    • (1999) J. Cell Sci. , vol.112 , pp. 3385-3398
    • Whittaker, K.L.1    Ding, D.2    Fisher, W.W.3    Lipshitz, H.D.4
  • 50
    • 0033063445 scopus 로고    scopus 로고
    • A striking organization of a large family of human neural cadherin-like cell adhesion genes
    • Wu Q., Maniatis T. A striking organization of a large family of human neural cadherin-like cell adhesion genes. Cell 1999, 97:779-790.
    • (1999) Cell , vol.97 , pp. 779-790
    • Wu, Q.1    Maniatis, T.2


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