-
1
-
-
0014409656
-
Factor fraction required for the synthesis of bacteriophage Qβ-RNA
-
Franze de Fernandez M.T., Eoyang L., August J.T. Factor fraction required for the synthesis of bacteriophage Qβ-RNA. Nature 1968, 219:588-590.
-
(1968)
Nature
, vol.219
, pp. 588-590
-
-
Franze de Fernandez, M.T.1
Eoyang, L.2
August, J.T.3
-
2
-
-
79960433506
-
Hfq and its constellation of RNA
-
Vogel J., Luisi B.F. Hfq and its constellation of RNA. Nat Rev Microbiol 2011, 9:578-589.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 578-589
-
-
Vogel, J.1
Luisi, B.F.2
-
3
-
-
84866307118
-
The bacterial protein Hfq: much more than a mere RNA-binding factor
-
Sobrero P., Valverde C. The bacterial protein Hfq: much more than a mere RNA-binding factor. Crit Rev Microbiol 2012, 38:276-299.
-
(2012)
Crit Rev Microbiol
, vol.38
, pp. 276-299
-
-
Sobrero, P.1
Valverde, C.2
-
4
-
-
1642565815
-
The bacterial Sm-like protein Hfq: a key player in RNA transactions
-
Valentin-Hansen P., Eriksen M., Udesen C. The bacterial Sm-like protein Hfq: a key player in RNA transactions. Mol Microbiol 2004, 51:1525-1533.
-
(2004)
Mol Microbiol
, vol.51
, pp. 1525-1533
-
-
Valentin-Hansen, P.1
Eriksen, M.2
Udesen, C.3
-
5
-
-
84879005493
-
Structure and RNA-binding properties of the bacterial LSm protein Hfq
-
Sauer E. Structure and RNA-binding properties of the bacterial LSm protein Hfq. RNA Biol 2013, 10:610-618.
-
(2013)
RNA Biol
, vol.10
, pp. 610-618
-
-
Sauer, E.1
-
6
-
-
34247109118
-
Hfq structure, function and ligand binding
-
Brennan R.G., Link T.M. Hfq structure, function and ligand binding. Curr Opin Microbiol 2007, 10:125-133.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 125-133
-
-
Brennan, R.G.1
Link, T.M.2
-
7
-
-
84879005894
-
Lsm proteins and Hfq: life at the 3' end
-
Wilusz C.J., Wilusz J. Lsm proteins and Hfq: life at the 3' end. RNA Biol 2013, 10:592-601.
-
(2013)
RNA Biol
, vol.10
, pp. 592-601
-
-
Wilusz, C.J.1
Wilusz, J.2
-
8
-
-
84879027709
-
Archaeal and eukaryotic homologs of Hfq: a structural and evolutionary perspective on Sm function
-
Mura C., Randolph P.S., Patterson J., Cozen A.E. Archaeal and eukaryotic homologs of Hfq: a structural and evolutionary perspective on Sm function. RNA Biol 2013, 10:636-651.
-
(2013)
RNA Biol
, vol.10
, pp. 636-651
-
-
Mura, C.1
Randolph, P.S.2
Patterson, J.3
Cozen, A.E.4
-
9
-
-
0036645689
-
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein
-
Schumacher M.A., Pearson R.F., Møller T., Valentin-Hansen P., Brennan R.G. Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. EMBO J 2002, 21:3546-3556.
-
(2002)
EMBO J
, vol.21
, pp. 3546-3556
-
-
Schumacher, M.A.1
Pearson, R.F.2
Møller, T.3
Valentin-Hansen, P.4
Brennan, R.G.5
-
10
-
-
72049095718
-
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
-
Link T.M., Valentin-Hansen P., Brennan R.G. Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proc Natl Acad Sci USA 2009, 106:19292-19297.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19292-19297
-
-
Link, T.M.1
Valentin-Hansen, P.2
Brennan, R.G.3
-
11
-
-
80051973174
-
PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action
-
Otaka H., Ishikawa H., Morita T., Aiba H. PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action. Proc Natl Acad Sci USA 2011, 108:13059-13064.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 13059-13064
-
-
Otaka, H.1
Ishikawa, H.2
Morita, T.3
Aiba, H.4
-
12
-
-
84860000113
-
The functional Hfq-binding module of bacterial sRNAs consists of a double or single hairpin preceded by a U-rich sequence and followed by a 3' poly(U) tail
-
Ishikawa H., Otaka H., Maki K., Morita T., Aiba H. The functional Hfq-binding module of bacterial sRNAs consists of a double or single hairpin preceded by a U-rich sequence and followed by a 3' poly(U) tail. RNA 2012, 18:1062-1074.
-
(2012)
RNA
, vol.18
, pp. 1062-1074
-
-
Ishikawa, H.1
Otaka, H.2
Maki, K.3
Morita, T.4
Aiba, H.5
-
13
-
-
84878819251
-
Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA
-
Wang W., Wang L., Wu J., Gong Q., Shi Y. Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA. Nucleic Acids Res 2013, 41:5938-5948.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 5938-5948
-
-
Wang, W.1
Wang, L.2
Wu, J.3
Gong, Q.4
Shi, Y.5
-
14
-
-
80051962605
-
Structural basis for RNA 3'-end recognition by Hfq
-
Sauer E., Weichenrieder O. Structural basis for RNA 3'-end recognition by Hfq. Proc Natl Acad Sci USA 2011, 108:13065-13070.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 13065-13070
-
-
Sauer, E.1
Weichenrieder, O.2
-
15
-
-
84907204263
-
Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes
-
Kovach A.R., Hoff K.E., Canty J.T., Orans J., Brennan R.G. Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes. RNA 2014, 20:1548-1559.
-
(2014)
RNA
, vol.20
, pp. 1548-1559
-
-
Kovach, A.R.1
Hoff, K.E.2
Canty, J.T.3
Orans, J.4
Brennan, R.G.5
-
16
-
-
84883809477
-
Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets
-
Zhang A., Schu D.J., Tjaden B.C., Storz G., Gottesman S. Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets. J Mol Biol 2013, 425:3678-3697.
-
(2013)
J Mol Biol
, vol.425
, pp. 3678-3697
-
-
Zhang, A.1
Schu, D.J.2
Tjaden, B.C.3
Storz, G.4
Gottesman, S.5
-
17
-
-
84952863347
-
Acidic residues in the Hfq chaperone increase the selectivity of sRNA binding and annealing
-
Panja S., Santiago-Frangos A., Schu D.J., Gottesman S., Woodson S.A. Acidic residues in the Hfq chaperone increase the selectivity of sRNA binding and annealing. J Mol Biol 2015, 427:3491-3500.
-
(2015)
J Mol Biol
, vol.427
, pp. 3491-3500
-
-
Panja, S.1
Santiago-Frangos, A.2
Schu, D.J.3
Gottesman, S.4
Woodson, S.A.5
-
18
-
-
84895789299
-
Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching
-
Robinson K.E., Orans J., Kovach A.R., Link T.M., Brennan R.G. Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching. Nucleic Acids Res 2014, 42:2736-2749.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 2736-2749
-
-
Robinson, K.E.1
Orans, J.2
Kovach, A.R.3
Link, T.M.4
Brennan, R.G.5
-
19
-
-
84945187953
-
Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq
-
Wang L., Wang W., Li F., Zhang J., Wu J., Gong Q., Shi Y. Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq. Nucleic Acids Res 2015, 43:2400-2411.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 2400-2411
-
-
Wang, L.1
Wang, W.2
Li, F.3
Zhang, J.4
Wu, J.5
Gong, Q.6
Shi, Y.7
-
20
-
-
84870625738
-
Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract
-
Horstmann N., Orans J., Valentin-Hansen P., Shelburne S.A.I., Brennan R.G. Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract. Nucleic Acids Res 2012, 40:11023-11035.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 11023-11035
-
-
Horstmann, N.1
Orans, J.2
Valentin-Hansen, P.3
Shelburne, S.A.I.4
Brennan, R.G.5
-
21
-
-
84857839806
-
Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq
-
Someya T., Baba S., Fujimoto M., Kawai G., Kumasaka T., Nakamura K. Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq. Nucleic Acids Res 2012, 40:1856-1867.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1856-1867
-
-
Someya, T.1
Baba, S.2
Fujimoto, M.3
Kawai, G.4
Kumasaka, T.5
Nakamura, K.6
-
22
-
-
84866949691
-
Hfq proximity and orientation controls RNA annealing
-
Panja S., Woodson S.A. Hfq proximity and orientation controls RNA annealing. Nucleic Acids Res 2012, 40:8690-8697.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 8690-8697
-
-
Panja, S.1
Woodson, S.A.2
-
23
-
-
84859915108
-
Multiple factors dictate target selection by Hfq-binding small RNAs
-
Beisel C.L., Updegrove T.B., Janson B.J., Storz G. Multiple factors dictate target selection by Hfq-binding small RNAs. EMBO J 2012, 31:1961-1974.
-
(2012)
EMBO J
, vol.31
, pp. 1961-1974
-
-
Beisel, C.L.1
Updegrove, T.B.2
Janson, B.J.3
Storz, G.4
-
24
-
-
84891827418
-
Positional effects of AAN motifs in rpoS regulation by sRNAs and Hfq
-
Peng Y., Soper T.J., Woodson S.A. Positional effects of AAN motifs in rpoS regulation by sRNAs and Hfq. J Mol Biol 2014, 426:275-285.
-
(2014)
J Mol Biol
, vol.426
, pp. 275-285
-
-
Peng, Y.1
Soper, T.J.2
Woodson, S.A.3
-
25
-
-
84944442094
-
Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition
-
Schu D.J., Zhang A., Gottesman S., Storz G. Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition. EMBO J 2015, 34:2557-2573.
-
(2015)
EMBO J
, vol.34
, pp. 2557-2573
-
-
Schu, D.J.1
Zhang, A.2
Gottesman, S.3
Storz, G.4
-
26
-
-
84922634643
-
Structure of bacterial regulatory RNAs determines their performance in competition for the chaperone protein Hfq
-
Małecka E.M., Strózecka J., Sobańska D., Olejniczak M. Structure of bacterial regulatory RNAs determines their performance in competition for the chaperone protein Hfq. Biochemistry 2015, 54:1157-1170.
-
(2015)
Biochemistry
, vol.54
, pp. 1157-1170
-
-
Małecka, E.M.1
Strózcka, J.2
Sobańska, D.3
Olejniczak, M.4
-
27
-
-
84928433960
-
Hfq binds directly to the ribosome binding site of IS10 transposase mRNA to inhibit translation
-
Ellis M.J., Trussler R.S., Haniford D.B. Hfq binds directly to the ribosome binding site of IS10 transposase mRNA to inhibit translation. Mol Microbiol 2015, 96:633-650.
-
(2015)
Mol Microbiol
, vol.96
, pp. 633-650
-
-
Ellis, M.J.1
Trussler, R.S.2
Haniford, D.B.3
-
28
-
-
84880678756
-
Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoS
-
Henderson C.A., Vincent H.A., Casamento A., Stone C.M., Phillips J.O., Cary P.D., Sobott F., Gowers D.M., Taylor J.E., Callaghan A.J. Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoS. RNA 2013, 19:1089-1104.
-
(2013)
RNA
, vol.19
, pp. 1089-1104
-
-
Henderson, C.A.1
Vincent, H.A.2
Casamento, A.3
Stone, C.M.4
Phillips, J.O.5
Cary, P.D.6
Sobott, F.7
Gowers, D.M.8
Taylor, J.E.9
Callaghan, A.J.10
-
29
-
-
54849408366
-
Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader region
-
Updegrove T., Wilf N., Sun X., Wartell R.M. Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader region. Biochemistry 2008, 47:11184-11195.
-
(2008)
Biochemistry
, vol.47
, pp. 11184-11195
-
-
Updegrove, T.1
Wilf, N.2
Sun, X.3
Wartell, R.M.4
-
30
-
-
84862232515
-
Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition
-
Sauer E., Schmidt S., Weichenrieder O. Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition. Proc USA 2012, 109:9396-9401.
-
(2012)
Proc USA
, vol.109
, pp. 9396-9401
-
-
Sauer, E.1
Schmidt, S.2
Weichenrieder, O.3
-
31
-
-
84883478358
-
Conserved arginines on the rim of Hfq catalyze base pair formation and exchange
-
Panja S., Schu D.J., Woodson S.A. Conserved arginines on the rim of Hfq catalyze base pair formation and exchange. Nucleic Acids Res 2013, 41:7536-7546.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 7536-7546
-
-
Panja, S.1
Schu, D.J.2
Woodson, S.A.3
-
32
-
-
84929002871
-
Recognition of the small regulatory RNA RydC by the bacterial Hfq protein
-
Dimastrogiovanni D., Fröhlich K.S., Bandyra K.J., Bruce H.A., Hohensee S., Vogel J., Luisi B.F. Recognition of the small regulatory RNA RydC by the bacterial Hfq protein. eLife 2014, 3:e05375.
-
(2014)
eLife
, vol.3
-
-
Dimastrogiovanni, D.1
Fröhlich, K.S.2
Bandyra, K.J.3
Bruce, H.A.4
Hohensee, S.5
Vogel, J.6
Luisi, B.F.7
-
33
-
-
84881309687
-
Hfq binds ribonucleotides in three different RNA-binding sites
-
Murina V., Lekontseva N., Nikulin A. Hfq binds ribonucleotides in three different RNA-binding sites. Acta Crystallogr D 2013, 69:1504-1513.
-
(2013)
Acta Crystallogr D
, vol.69
, pp. 1504-1513
-
-
Murina, V.1
Lekontseva, N.2
Nikulin, A.3
-
34
-
-
84914125314
-
Structural model of an mRNA in complex with the bacterial chaperone Hfq
-
Peng Y., Curtis J.E., Fang X., Woodson S.A. Structural model of an mRNA in complex with the bacterial chaperone Hfq. Proc Natl Acad Sci USA 2014, 111:17134-17139.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 17134-17139
-
-
Peng, Y.1
Curtis, J.E.2
Fang, X.3
Woodson, S.A.4
-
35
-
-
84861792252
-
Characterization of Vibrio cholerae Hfq provides novel insights into the role of the Hfq C-terminal region
-
Vincent H.A., Henderson C.A., Ragan T.J., Garza-Garcia A., Cary P.D., Gowers D.M., Malfois M., Driscoll P.C., Sobott F., Callaghan A.J. Characterization of Vibrio cholerae Hfq provides novel insights into the role of the Hfq C-terminal region. J Mol Biol 2012, 420:56-69.
-
(2012)
J Mol Biol
, vol.420
, pp. 56-69
-
-
Vincent, H.A.1
Henderson, C.A.2
Ragan, T.J.3
Garza-Garcia, A.4
Cary, P.D.5
Gowers, D.M.6
Malfois, M.7
Driscoll, P.C.8
Sobott, F.9
Callaghan, A.J.10
-
36
-
-
84907217605
-
Clostridium difficile Hfq can replace Escherichia coli Hfq for most of its function
-
Caillet J., Gracia C., Fontaine F., Hajnsdorf E. Clostridium difficile Hfq can replace Escherichia coli Hfq for most of its function. RNA 2014, 20:1567-1578.
-
(2014)
RNA
, vol.20
, pp. 1567-1578
-
-
Caillet, J.1
Gracia, C.2
Fontaine, F.3
Hajnsdorf, E.4
-
37
-
-
84879014020
-
Cycling of RNAs on Hfq
-
Wagner E.G.H. Cycling of RNAs on Hfq. RNA 2013, 10:619-626.
-
(2013)
RNA
, vol.10
, pp. 619-626
-
-
Wagner, E.G.H.1
-
38
-
-
84929190855
-
Light-triggered RNA annealing by an RNA chaperone
-
Panja S., Paul R., Greenberg M.M., Woodson S.A. Light-triggered RNA annealing by an RNA chaperone. Angew Chem Int Ed Engl 2015, 54:7281-7284.
-
(2015)
Angew Chem Int Ed Engl
, vol.54
, pp. 7281-7284
-
-
Panja, S.1
Paul, R.2
Greenberg, M.M.3
Woodson, S.A.4
-
39
-
-
84874642927
-
Extracting intracellular diffusive states and transition rates from single-molecule tracking data
-
Persson F., Lindén M., Unoson C., Elf J. Extracting intracellular diffusive states and transition rates from single-molecule tracking data. Nat Methods 2013, 10:265-269.
-
(2013)
Nat Methods
, vol.10
, pp. 265-269
-
-
Persson, F.1
Lindén, M.2
Unoson, C.3
Elf, J.4
-
40
-
-
84925337335
-
RNA biochemistry, Determination of in vivo target search kinetics of regulatory noncoding RNA
-
Fei J., Singh D., Zhang Q., Park S., Balasubramanian D., Golding I., Vanderpool C.K., Ha T. RNA biochemistry, Determination of in vivo target search kinetics of regulatory noncoding RNA. Science 2015, 347:1371-1374.
-
(2015)
Science
, vol.347
, pp. 1371-1374
-
-
Fei, J.1
Singh, D.2
Zhang, Q.3
Park, S.4
Balasubramanian, D.5
Golding, I.6
Vanderpool, C.K.7
Ha, T.8
-
41
-
-
84949008358
-
Paradoxical suppression of small RNA activity at high Hfq concentrations due to random-order binding
-
Sagawa S., Shin J.E., Hussein R., Lim H.N. Paradoxical suppression of small RNA activity at high Hfq concentrations due to random-order binding. Nucleic Acids Res 2015, 43:8502-8515.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 8502-8515
-
-
Sagawa, S.1
Shin, J.E.2
Hussein, R.3
Lim, H.N.4
-
42
-
-
84904467798
-
Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli
-
Tree J.J., Granneman S., McAteer S.P., Tollervey D., Gally D.L. Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli. Mol Cell 2014, 55:199-213.
-
(2014)
Mol Cell
, vol.55
, pp. 199-213
-
-
Tree, J.J.1
Granneman, S.2
McAteer, S.P.3
Tollervey, D.4
Gally, D.L.5
-
43
-
-
84928893761
-
A 3' external transcribed spacer in a tRNA transcript acts as a sponge for small RNAs to prevent transcriptional noise
-
Lalaouna D., Carrier M.C., Semsey S., Brouard J.S., Wang J., Wade J.T., Massé E. A 3' external transcribed spacer in a tRNA transcript acts as a sponge for small RNAs to prevent transcriptional noise. Mol Cell 2015, 58:393-405.
-
(2015)
Mol Cell
, vol.58
, pp. 393-405
-
-
Lalaouna, D.1
Carrier, M.C.2
Semsey, S.3
Brouard, J.S.4
Wang, J.5
Wade, J.T.6
Massé, E.7
-
44
-
-
84969794511
-
Hfqs in Bacillus anthracis: role of protein sequence variation in the structure and function of proteins in the Hfq family
-
Vrentas C., Ghirlando R., Keefer A., Hu Z., Tomczak A., Gittis A.G., Murthi A., Garboczi D.N., Gottesman S., Leppla S.H. Hfqs in Bacillus anthracis: role of protein sequence variation in the structure and function of proteins in the Hfq family. Protein Sci 2015, 24:1808-1819.
-
(2015)
Protein Sci
, vol.24
, pp. 1808-1819
-
-
Vrentas, C.1
Ghirlando, R.2
Keefer, A.3
Hu, Z.4
Tomczak, A.5
Gittis, A.G.6
Murthi, A.7
Garboczi, D.N.8
Gottesman, S.9
Leppla, S.H.10
-
45
-
-
84861594919
-
Lack of interchangeability of Hfq-like proteins
-
Rochat T., Bouloc P., Yang Q., Bossi L., Figueroa-Bossi N. Lack of interchangeability of Hfq-like proteins. Biochimie 2012, 94:1554-1559.
-
(2012)
Biochimie
, vol.94
, pp. 1554-1559
-
-
Rochat, T.1
Bouloc, P.2
Yang, Q.3
Bossi, L.4
Figueroa-Bossi, N.5
|