HapTree: A novel bayesian framework for single individual polyplotyping using NGS data

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 8394 LNBI, Issue , 2014, Pages 18-19

  Berger, Emily ^a,b,c   Yorukoglu, Deniz ^b   Peng, Jian ^a,b   Berger, Bonnie ^a,b  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; MOLECULAR BIOLOGY; TOOLS;

BAYESIAN FRAMEWORKS; COMPUTATIONAL INVESTIGATION; GENETIC INTERACTION; HAPLOTYPES; MUTANT ALLELES; NEXT-GENERATION SEQUENCING; SINGLE-NUCLEOTIDE POLYMORPHISMS; WILD TYPES;

GENES;

EID: 84958552431     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-319-05269-4_2     Document Type: Conference Paper

References (5)

1. Aguiar, D., Istrail, S.: Hapcompass: A fast cycle basis algorithm for accurate haplotype assembly of sequence data. Journal of Computational Biology 19(6), 577-590 (2012
2. Aguiar, D., Istrail, S.: Haplotype assembly in polyploid genomes and identical by descent shared tracts. Bioinformatics 29(13), i352-i360 (2013
3. Bansal, V., Bafna, V.: Hapcut: An efficient and accurate algorithm for the haplotype assembly problem. Bioinformatics 24(16), i153-i159 (2008
4. Lancia, G., Bafna, V., Istrail, S., Lippert, R., Schwartz, R.: SNPs problems, complexity, and algorithms. In: Meyer auf der Heide, F. (ed.) ESA 2001. LNCS, vol. 2161, pp. 182-193. Springer, Heidelberg (2001
5. Lippert, R., Schwartz, R., Lancia, G., Istrail, S.: Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem. Briefings in Bioinformatics 3(1), 23-31 (2002