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Volumn 6, Issue , 2016, Pages

An Efficient LCM-Based Method for Tissue Specific Expression Analysis of Genes and miRNAs

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA;

EID: 84958092904     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep21577     Document Type: Article
Times cited : (33)

References (32)
  • 1
    • 84925857260 scopus 로고    scopus 로고
    • Laser assisted microdissection, an efficient technique to understand tissue specific gene expression patterns and functional genomics in plants
    • Gautam, V., Sarkar, A. K. Laser assisted microdissection, an efficient technique to understand tissue specific gene expression patterns and functional genomics in plants. Mol. Biotechnol. 57, 299-308 (2015).
    • (2015) Mol. Biotechnol. , vol.57 , pp. 299-308
    • Gautam, V.1    Sarkar, A.K.2
  • 2
    • 79952114001 scopus 로고    scopus 로고
    • Fluorescence-activated cell sorting in plant developmental biology
    • Iyer-Pascuzzi, A. S., Benfey, P. N. Fluorescence-activated cell sorting in plant developmental biology. Methods Mol. Biol. 655, 313-9 (2010).
    • (2010) Methods Mol. Biol. , vol.655 , pp. 313-319
    • Iyer-Pascuzzi, A.S.1    Benfey, P.N.2
  • 3
    • 0016927159 scopus 로고
    • Fluorescence-activated cell sorting
    • Herzenberg, L. A., Sweet, R. G. Fluorescence-activated cell sorting.Sci Am. 234, 108-17 (1976).
    • (1976) Sci Am. , vol.234 , pp. 108-117
    • Herzenberg, L.A.1    Sweet, R.G.2
  • 4
    • 23144461287 scopus 로고    scopus 로고
    • Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines
    • Birnbaum, K.et al. Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines. Nat. Methods. 2, 615-9 (2005).
    • (2005) Nat. Methods. , vol.2 , pp. 615-619
    • Birnbaum, K.1
  • 5
    • 29544440189 scopus 로고    scopus 로고
    • Transcriptional profile of the Arabidopsis root quiescent center
    • Nawy, T. et al. Transcriptional profile of the Arabidopsis root quiescent center.Plant Cell. 17, 1908-25 (2005).
    • (2005) Plant Cell. , vol.17 , pp. 1908-1925
    • Nawy, T.1
  • 6
    • 0030575911 scopus 로고    scopus 로고
    • Laser capture microdissection
    • Emmert-Buck, M. R. et al. Laser capture microdissection.Science. 274, 998-1001 (1996).
    • (1996) Science. , vol.274 , pp. 998-1001
    • Emmert-Buck, M.R.1
  • 8
    • 67649848606 scopus 로고    scopus 로고
    • Laser capture microdissection in the genomic and proteomic era: Targeting the genetic basis of cancer
    • Domazet, B., Maclennan, G. T., Lopez-Beltran, A., Montironi, R., Cheng, L. Laser capture microdissection in the genomic and proteomic era: targeting the genetic basis of cancer. Int. J. Clin. Exp. Pathol. 1, 475-88 (2008).
    • (2008) Int. J. Clin. Exp. Pathol. , vol.1 , pp. 475-488
    • Domazet, B.1    MacLennan, G.T.2    Lopez-Beltran, A.3    Montironi, R.4    Cheng, L.5
  • 9
    • 35448940971 scopus 로고    scopus 로고
    • Global gene expression analysis of the shoot apical meristem of maize (Zea mays L
    • Ohtsu, K. et al. Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). Plant J. 52, 391-404 (2007).
    • (2007) Plant J. , vol.52 , pp. 391-404
    • Ohtsu, K.1
  • 10
    • 67149128424 scopus 로고    scopus 로고
    • Microdissection of shoot meristem functional domains
    • Brooks, L., 3rd et al. Microdissection of shoot meristem functional domains. PLoS Genet. 5, e1000476 (2009).
    • (2009) PLoS Genet. , vol.5 , pp. e1000476
    • Brooks, L.1
  • 11
    • 77949775420 scopus 로고    scopus 로고
    • The maize root stem cell niche: A partnership between two sister cell populations
    • Jiang, K., Zhu, T., Diao, Z., Huang, H., Feldman, L. J. The maize root stem cell niche: a partnership between two sister cell populations. Planta. 231, 411-24 (2009).
    • (2009) Planta. , vol.231 , pp. 411-424
    • Jiang, K.1    Zhu, T.2    Diao, Z.3    Huang, H.4    Feldman, L.J.5
  • 12
    • 77954400071 scopus 로고    scopus 로고
    • Ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves
    • Douglas, R. N. et al. ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves. Plant Cell. 22, 1441-51 (2010).
    • (2010) Plant Cell. , vol.22 , pp. 1441-1451
    • Douglas, R.N.1
  • 13
    • 84856304664 scopus 로고    scopus 로고
    • A powerful method for transcriptional profiling of specific cell types in eukaryotes: Laser-assisted microdissection and RNA sequencing
    • Schmid, M. W. et al. A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing. PLoS One. 7, e29685.
    • PLoS One. , vol.7 , pp. e29685
    • Schmid, M.W.1
  • 14
    • 76249108093 scopus 로고    scopus 로고
    • Laser microdissection of Arabidopsis cells at the powdery mildew infection site reveals site-specific processes and regulators
    • Chandran, D., Inada, N., Hather, G., Kleindt, C. K., Wildermuth, M. C. Laser microdissection of Arabidopsis cells at the powdery mildew infection site reveals site-specific processes and regulators. Proc. Natl. Acad. Sci. USA 107, 460-5 (2009).
    • (2009) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 460-465
    • Chandran, D.1    Inada, N.2    Hather, G.3    Kleindt, C.K.4    Wildermuth, M.C.5
  • 15
    • 27944495693 scopus 로고    scopus 로고
    • Laser capture microdissection (LCM) and expression analyses of Glycine max (soybean) syncytium containing root regions formed by the plant pathogen Heterodera glycines (soybean cyst nematode
    • Klink, V. P., Alkharouf, N., MacDonald, M., Matthews, B. Laser capture microdissection (LCM) and expression analyses of Glycine max (soybean) syncytium containing root regions formed by the plant pathogen Heterodera glycines (soybean cyst nematode). Plant Mol. Biol. 59, 965-79 (2005).
    • (2005) Plant Mol. Biol. , vol.59 , pp. 965-979
    • Klink, V.P.1    Alkharouf, N.2    MacDonald, M.3    Matthews, B.4
  • 16
    • 9944260955 scopus 로고    scopus 로고
    • Using laser capture microdissection to study gene expression in early stages of giant cells induced by root-knot nematodes
    • Ramsay, K., Wang, Z., Jones, M. G. Using laser capture microdissection to study gene expression in early stages of giant cells induced by root-knot nematodes. Mol. Plant Pathol. 5, 587-92 (2004).
    • (2004) Mol. Plant Pathol. , vol.5 , pp. 587-592
    • Ramsay, K.1    Wang, Z.2    Jones, M.G.3
  • 17
    • 78049306506 scopus 로고    scopus 로고
    • A method for obtaining high quality RNA from paraffin sections of plant tissues by laser microdissection
    • Takahashi, H. et al. A method for obtaining high quality RNA from paraffin sections of plant tissues by laser microdissection. J. Plant Res. 123, 807-13 (2010).
    • (2010) J. Plant Res. , vol.123 , pp. 807-813
    • Takahashi, H.1
  • 18
    • 67651165485 scopus 로고    scopus 로고
    • Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA
    • Chapter 25 Unit 25A 3
    • Scanlon, M. J., Ohtsu, K., Timmermans, M. C., Schnable, P. S. Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA. Curr. Protoc. Mol Biol. Chapter 25, Unit 25A 3 (2009).
    • (2009) Curr. Protoc. Mol Biol.
    • Scanlon, M.J.1    Ohtsu, K.2    Timmermans, M.C.3    Schnable, P.S.4
  • 19
    • 70949095605 scopus 로고    scopus 로고
    • T7-based RNA amplification for genotyping from maize shoot apical meristem
    • pdb prot4785
    • Ohtsu, K., Schnable, P. S. T7-based RNA amplification for genotyping from maize shoot apical meristem. CSH Protoc. 2007, pdb prot4785 (2007).
    • (2007) CSH Protoc. , vol.2007
    • Ohtsu, K.1    Schnable, P.S.2
  • 20
    • 84871181801 scopus 로고    scopus 로고
    • SWP1 negatively regulates lateral root initiation and elongation in Arabidopsis
    • Singh, S., Singh, A., Roy, S., Sarkar, A. K. SWP1 negatively regulates lateral root initiation and elongation in Arabidopsis. Plant Signal. Behav. 7, 1522-5 (2012).
    • (2012) Plant Signal. Behav. , vol.7 , pp. 1522-1525
    • Singh, S.1    Singh, A.2    Roy, S.3    Sarkar, A.K.4
  • 21
    • 84900837849 scopus 로고    scopus 로고
    • Balanced activity of microRNA166/165 and its target transcripts from the class III homeodomain-leucine zipper family regulates root growth in Arabidopsis thaliana
    • Singh, A., Singh, S., Panigrahi, K. C., Reski, R., Sarkar, A. K. Balanced activity of microRNA166/165 and its target transcripts from the class III homeodomain-leucine zipper family regulates root growth in Arabidopsis thaliana. Plant Cell Rep. 33, 945-53 (2014).
    • (2014) Plant Cell Rep. , vol.33 , pp. 945-953
    • Singh, A.1    Singh, S.2    Panigrahi, K.C.3    Reski, R.4    Sarkar, A.K.5
  • 22
    • 84995502813 scopus 로고    scopus 로고
    • Improving the plant root system architecture to combat abiotic stresses incurred as a result of global climate changes
    • Wiley-VCH Verlag GmbH & Co. KGaA
    • Sarkar, A. K., Mayandi, K., Gautam, V., Barik, S., Sarkar Das, S. Improving the Plant Root System Architecture to Combat Abiotic Stresses Incurred as a Result of Global Climate Changes. In Climate Change and Plant Abiotic Stress Tolerance 305-324 (Wiley-VCH Verlag GmbH & Co. KGaA, 2013).
    • (2013) Climate Change and Plant Abiotic Stress Tolerance , pp. 305-324
    • Sarkar, A.K.1    Mayandi, K.2    Gautam, V.3    Barik, S.4    Sarkar Das, S.5
  • 23
    • 1242352556 scopus 로고    scopus 로고
    • Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana
    • Haecker, A. et al. Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development. 131, 657-68 (2004).
    • (2004) Development. , vol.131 , pp. 657-668
    • Haecker, A.1
  • 24
    • 34147203723 scopus 로고    scopus 로고
    • Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers
    • Sarkar, A. K. et al. Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature. 446, 811-4 (2007).
    • (2007) Nature. , vol.446 , pp. 811-814
    • Sarkar, A.K.1
  • 25
    • 0031719321 scopus 로고    scopus 로고
    • The development of apical embryonic pattern in Arabidopsis
    • Long, J. A., Barton, M. K. The development of apical embryonic pattern in Arabidopsis. Development. 125, 3027-35 (1998).
    • (1998) Development. , vol.125 , pp. 3027-3035
    • Long, J.A.1    Barton, M.K.2
  • 27
    • 80051932344 scopus 로고    scopus 로고
    • MicroRNAs as regulators of root development and architecture
    • Khan, G. A. et al. MicroRNAs as regulators of root development and architecture. Plant Mol. Biol. 77, 47-58 (2011).
    • (2011) Plant Mol. Biol. , vol.77 , pp. 47-58
    • Khan, G.A.1
  • 28
    • 84855304145 scopus 로고    scopus 로고
    • High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    • Breakfield, N. W. et al. High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. Genome Res. 22, 163-76 (2011).
    • (2011) Genome Res. , vol.22 , pp. 163-176
    • Breakfield, N.W.1
  • 29
    • 84944338911 scopus 로고    scopus 로고
    • Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species
    • Barik, S. et al. Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species. Sci. Rep. 5, 14611 (2015).
    • (2015) Sci. Rep. , vol.5 , pp. 14611
    • Barik, S.1
  • 30
    • 84895878587 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals conservation and diversification of micro RNA166 genes among diverse plant species
    • Barik, S. et al. Phylogenetic analysis reveals conservation and diversification of micro RNA166 genes among diverse plant species. Genomics. 103, 114-21 (2014).
    • (2014) Genomics. , vol.103 , pp. 114-121
    • Barik, S.1
  • 31
    • 38849140922 scopus 로고    scopus 로고
    • Protocol: A highly sensitive RT-PCR method for detection and quantification of microRNAs
    • Varkonyi-Gasic, E., Wu, R., Wood, M., Walton, E. F., Hellens, R. P. Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods. 3, 12 (2007).
    • (2007) Plant Methods. , vol.3 , pp. 12
    • Varkonyi-Gasic, E.1    Wu, R.2    Wood, M.3    Walton, E.F.4    Hellens, R.P.5
  • 32
    • 77649201708 scopus 로고    scopus 로고
    • Expression profiling of microRNA using real-time quantitative PCR, how to use it and what is available
    • Benes, V., Castoldi, M. Expression profiling of microRNA using real-time quantitative PCR, how to use it and what is available. Methods. 50, 244-9 (2010).
    • (2010) Methods. , vol.50 , pp. 244-249
    • Benes, V.1    Castoldi, M.2


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