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Volumn 123, Issue 5, 2016, Pages 1143-1150

Whole Genome Sequencing Increases Molecular Diagnostic Yield Compared with Current Diagnostic Testing for Inherited Retinal Disease

Author keywords

[No Author keywords available]

Indexed keywords

COMPARATIVE STUDY; CONFERENCE PAPER; CONTROLLED STUDY; DIAGNOSTIC VALUE; FEMALE; GENE SEQUENCE; GENETIC VARIABILITY; GENOME; HUMAN; INHERITED RETINAL DISEASE; MAJOR CLINICAL STUDY; MALE; MOLECULAR DIAGNOSIS; NEXT GENERATION SEQUENCING; OUTCOME ASSESSMENT; POPULATION STRUCTURE; PRIORITY JOURNAL; RETINA DISEASE; RETROSPECTIVE STUDY; SENSITIVITY AND SPECIFICITY; SINGLE NUCLEOTIDE POLYMORPHISM; WHOLE GENOME SEQUENCING; DNA SEQUENCE; EYE DISEASE; GENETICS; GENOTYPE; HIGH THROUGHPUT SEQUENCING;

EID: 84957927610     PISSN: 01616420     EISSN: 15494713     Source Type: Journal    
DOI: 10.1016/j.ophtha.2016.01.009     Document Type: Conference Paper
Times cited : (118)

References (30)
  • 1
    • 84929347074 scopus 로고    scopus 로고
    • Pinpointing clinical diagnosis through whole exome sequencing to direct patient care: A case of Senior-Loken syndrome
    • J.M. Ellingford, P.I. Sergouniotis, R. Lennon, and et al. Pinpointing clinical diagnosis through whole exome sequencing to direct patient care: a case of Senior-Loken syndrome Lancet 385 2015 1916
    • (2015) Lancet , vol.385 , pp. 1916
    • Ellingford, J.M.1    Sergouniotis, P.I.2    Lennon, R.3
  • 2
    • 77954621518 scopus 로고    scopus 로고
    • The molecular basis of human retinal and vitreoretinal diseases
    • W. Berger, B. Kloeckener-Gruissem, and J. Neidhardt The molecular basis of human retinal and vitreoretinal diseases Prog Retin Eye Res 29 2010 335 375
    • (2010) Prog Retin Eye Res , vol.29 , pp. 335-375
    • Berger, W.1    Kloeckener-Gruissem, B.2    Neidhardt, J.3
  • 3
    • 72849144434 scopus 로고    scopus 로고
    • Applications of next-generation sequencing sequencing technologies - The next generation
    • M.L. Metzker Applications of next-generation sequencing sequencing technologies - the next generation Nat Rev Genet 11 2010 31 46
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 4
    • 80054746492 scopus 로고    scopus 로고
    • Exome sequencing as a tool for Mendelian disease gene discovery
    • M.J. Bamshad, S.B. Ng, A.W. Bigham, and et al. Exome sequencing as a tool for Mendelian disease gene discovery Nat Rev Genet 12 2011 745 755
    • (2011) Nat Rev Genet , vol.12 , pp. 745-755
    • Bamshad, M.J.1    Ng, S.B.2    Bigham, A.W.3
  • 5
    • 84864099628 scopus 로고    scopus 로고
    • A paradigm shift in the delivery of services for diagnosis of inherited retinal disease
    • J. O'Sullivan, B.G. Mullaney, S.S. Bhaskar, and et al. A paradigm shift in the delivery of services for diagnosis of inherited retinal disease J Med Genet 49 2012 322 326
    • (2012) J Med Genet , vol.49 , pp. 322-326
    • O'Sullivan, J.1    Mullaney, B.G.2    Bhaskar, S.S.3
  • 6
    • 84936850971 scopus 로고    scopus 로고
    • Comprehensive gene panels provide advantages over clinical exome sequencing for Mendelian diseases
    • Saudi Mendeliome Group
    • Saudi Mendeliome Group Comprehensive gene panels provide advantages over clinical exome sequencing for Mendelian diseases Genome Biol 16 2015 134
    • (2015) Genome Biol , vol.16 , pp. 134
  • 7
    • 84865170123 scopus 로고    scopus 로고
    • Next-generation genetic testing for retinitis pigmentosa
    • K. Neveling, R.W.J. Collin, C. Gilissen, and et al. Next-generation genetic testing for retinitis pigmentosa Hum Mutat 33 2012 963 972
    • (2012) Hum Mutat , vol.33 , pp. 963-972
    • Neveling, K.1    Collin, R.W.J.2    Gilissen, C.3
  • 8
    • 84918840439 scopus 로고    scopus 로고
    • Clinical exome sequencing for genetic identification of rare Mendelian disorders
    • H. Lee, J.L. Deignan, N. Dorrani, and et al. Clinical exome sequencing for genetic identification of rare Mendelian disorders JAMA 312 2014 1880 1887
    • (2014) JAMA , vol.312 , pp. 1880-1887
    • Lee, H.1    Deignan, J.L.2    Dorrani, N.3
  • 9
    • 84885785987 scopus 로고    scopus 로고
    • Clinical whole-exome sequencing for the diagnosis of mendelian disorders
    • Y.P. Yang, D.M. Muzny, J.G. Reid, and et al. Clinical whole-exome sequencing for the diagnosis of mendelian disorders N Engl J Med 369 2013 1502 1511
    • (2013) N Engl J Med , vol.369 , pp. 1502-1511
    • Yang, Y.P.1    Muzny, D.M.2    Reid, J.G.3
  • 10
    • 84904465224 scopus 로고    scopus 로고
    • Genome sequencing identifies major causes of severe intellectual disability
    • C. Gilissen, J.Y. Hehir-Kwa, D.T. Thung, and et al. Genome sequencing identifies major causes of severe intellectual disability Nature 511 2014 344 347
    • (2014) Nature , vol.511 , pp. 344-347
    • Gilissen, C.1    Hehir-Kwa, J.Y.2    Thung, D.T.3
  • 11
    • 84867214350 scopus 로고    scopus 로고
    • Rapid whole-genome sequencing for genetic disease diagnosis in neonatal intensive care units
    • C.J. Saunders, N.A. Miller, S.E. Soden, and et al. Rapid whole-genome sequencing for genetic disease diagnosis in neonatal intensive care units Sci Transl Med 4 2012 154ra35
    • (2012) Sci Transl Med , vol.4 , pp. 154ra35
    • Saunders, C.J.1    Miller, N.A.2    Soden, S.E.3
  • 12
    • 84927702787 scopus 로고    scopus 로고
    • Use of whole genome sequencing for diagnosis and discovery in the cancer genetics clinic
    • S.B. Foley, J.J. Rios, V.E. Mgbemena, and et al. Use of whole genome sequencing for diagnosis and discovery in the cancer genetics clinic EBioMedicine 2 2015 74 81
    • (2015) EBioMedicine , vol.2 , pp. 74-81
    • Foley, S.B.1    Rios, J.J.2    Mgbemena, V.E.3
  • 13
    • 84896769549 scopus 로고    scopus 로고
    • Clinical interpretation and implications of whole-genome sequencing
    • F.E. Dewey, M.E. Grove, C. Pan, and et al. Clinical interpretation and implications of whole-genome sequencing JAMA 311 2014 1035 1045
    • (2014) JAMA , vol.311 , pp. 1035-1045
    • Dewey, F.E.1    Grove, M.E.2    Pan, C.3
  • 14
    • 84933279272 scopus 로고    scopus 로고
    • Factors influencing success of clinical genome sequencing across a broad spectrum of disorders
    • J.C. Taylor, H.C. Martin, S. Lise, and et al. Factors influencing success of clinical genome sequencing across a broad spectrum of disorders Nat Genet 47 2015 717 726
    • (2015) Nat Genet , vol.47 , pp. 717-726
    • Taylor, J.C.1    Martin, H.C.2    Lise, S.3
  • 15
    • 84963932168 scopus 로고    scopus 로고
    • The 100,000 Genomes Project Accessed January 10, 2015
    • The 100,000 Genomes Project. 2014. Available at: http://www.genomicsengland.co.uk/the-100000-genomes-project/. Accessed January 10, 2015.
    • (2014)
  • 17
    • 84926488048 scopus 로고    scopus 로고
    • Panel-based genetic diagnostic testing for inherited eye diseases is highly accurate and reproducible, and more sensitive for variant detection, than exome sequencing
    • M.B. Consugar, D. Navarro-Gomez, E.M. Place, and et al. Panel-based genetic diagnostic testing for inherited eye diseases is highly accurate and reproducible, and more sensitive for variant detection, than exome sequencing Genet Med 17 2015 253 261
    • (2015) Genet Med , vol.17 , pp. 253-261
    • Consugar, M.B.1    Navarro-Gomez, D.2    Place, E.M.3
  • 19
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 20
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • A. McKenna, M. Hanna, E. Banks, and et al. The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data Genome Res 20 2010 1297 1303
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3
  • 21
    • 74949138753 scopus 로고    scopus 로고
    • Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays
    • R. Drmanac, A.B. Sparks, M.J. Callow, and et al. Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays Science 327 2010 78 81
    • (2010) Science , vol.327 , pp. 78-81
    • Drmanac, R.1    Sparks, A.B.2    Callow, M.J.3
  • 22
    • 84859319800 scopus 로고    scopus 로고
    • Computational techniques for human genome resequencing using mated gapped reads
    • P. Carnevali, J. Baccash, A.L. Halpern, and et al. Computational techniques for human genome resequencing using mated gapped reads J Comput Biol 19 2012 279 292
    • (2012) J Comput Biol , vol.19 , pp. 279-292
    • Carnevali, P.1    Baccash, J.2    Halpern, A.L.3
  • 23
    • 84928209346 scopus 로고    scopus 로고
    • Standards and guidelines for the interpretation of sequence variants: A joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology
    • S. Richards, N. Aziz, S. Bale, and et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Genet Med 17 2015 405 423
    • (2015) Genet Med , vol.17 , pp. 405-423
    • Richards, S.1    Aziz, N.2    Bale, S.3
  • 24
    • 55049090812 scopus 로고    scopus 로고
    • EYS, encoding an ortholog of Drosophila spacemaker, is mutated in autosomal recessive retinitis pigmentosa
    • M.M. Abd El-Aziz, I. Barragan, C.A. O'Driscoll, and et al. EYS, encoding an ortholog of Drosophila spacemaker, is mutated in autosomal recessive retinitis pigmentosa Nat Genet 40 2008 1285 1287
    • (2008) Nat Genet , vol.40 , pp. 1285-1287
    • Abd El-Aziz, M.M.1    Barragan, I.2    O'Driscoll, C.A.3
  • 25
    • 70350694443 scopus 로고    scopus 로고
    • Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
    • K. Ye, M.H. Schulz, Q. Long, and et al. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads Bioinformatics 25 2009 2865 2871
    • (2009) Bioinformatics , vol.25 , pp. 2865-2871
    • Ye, K.1    Schulz, M.H.2    Long, Q.3
  • 26
    • 84890799156 scopus 로고    scopus 로고
    • Panel-based next generation sequencing as a reliable and efficient technique to detect mutations in unselected patients with retinal dystrophies
    • N. Glockle, S. Kohl, J. Mohr, and et al. Panel-based next generation sequencing as a reliable and efficient technique to detect mutations in unselected patients with retinal dystrophies Eur J Hum Genet 22 2014 99 104
    • (2014) Eur J Hum Genet , vol.22 , pp. 99-104
    • Glockle, N.1    Kohl, S.2    Mohr, J.3
  • 27
    • 84868026566 scopus 로고    scopus 로고
    • A robust model for read count data in exome sequencing experiments and implications for copy number variant calling
    • V. Plagnol, J. Curtis, M. Epstein, and et al. A robust model for read count data in exome sequencing experiments and implications for copy number variant calling Bioinformatics 28 2012 2747 2754
    • (2012) Bioinformatics , vol.28 , pp. 2747-2754
    • Plagnol, V.1    Curtis, J.2    Epstein, M.3
  • 28
    • 84928528797 scopus 로고    scopus 로고
    • Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants
    • A. Belkadi, A. Bolze, Y. Itan, and et al. Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants Proc Natl Acad Sci U S A 112 2015 5473 5478
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. 5473-5478
    • Belkadi, A.1    Bolze, A.2    Itan, Y.3
  • 29
    • 70249115599 scopus 로고    scopus 로고
    • RPGR ORF15 genotype and clinical variability of retinal degeneration in an Australian population
    • J.B. Ruddle, N.D. Ebenezer, L.S. Kearns, and et al. RPGR ORF15 genotype and clinical variability of retinal degeneration in an Australian population Br J Ophthalmol 93 2009 1151 1154
    • (2009) Br J Ophthalmol , vol.93 , pp. 1151-1154
    • Ruddle, J.B.1    Ebenezer, N.D.2    Kearns, L.S.3
  • 30
    • 52949086786 scopus 로고    scopus 로고
    • Insights from retinitis pigmentosa into the roles of isocitrate dehydrogenases in the Krebs cycle
    • D.T. Hartong, M. Dange, T.L. McGee, and et al. Insights from retinitis pigmentosa into the roles of isocitrate dehydrogenases in the Krebs cycle Nat Genet 40 2008 1230 1234
    • (2008) Nat Genet , vol.40 , pp. 1230-1234
    • Hartong, D.T.1    Dange, M.2    McGee, T.L.3


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