-
1
-
-
0026553672
-
PROSITE: A dictionary of protein sites and patterns
-
A. Bairoch. PROSITE: A dictionary of protein sites and patterns. Nucl. Acids Res., 20:2013-2018, 1992.
-
(1992)
Nucl. Acids Res
, vol.20
, pp. 2013-2018
-
-
Bairoch, A.1
-
2
-
-
84957611764
-
Determinants of a protein fold: Unique features of the globin amino acid sequence
-
D. Bashford, C. Chothia, and A. M. Lesk. Determinants of a protein fold: unique features of the globin amino acid sequence. J. Mol. Biol., 212:389-402, 1987.
-
(1987)
J. Mol. Biol
, vol.212
, pp. 389-402
-
-
Bashford, D.1
Chothia, C.2
Lesk, A.M.3
-
3
-
-
0026887079
-
A survey of multiple sequence comparison methods
-
S. C. Chan, A. K. Wong, and D. K. Chiu. A survey of multiple sequence comparison methods. Bull. Math. Biol, 54:563-598, 1992.
-
(1992)
Bull. Math. Biol
, vol.54
, pp. 563-598
-
-
Chan, S.C.1
Wong, A.K.2
Chiu, D.K.3
-
4
-
-
0023045776
-
Sequence landscapes
-
B. Clift, D. Haussler, R. McConnell, T. D. Schneider, and G. D. Stormo. Sequence landscapes. Nucleic Acids Res., 14:141-158, 1986.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 141-158
-
-
Clift, B.1
Haussler, D.2
McConnell, R.3
Schneider, T.D.4
Stormo, G.D.5
-
5
-
-
0022358896
-
Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli
-
D. J. Galas, M. Eggert, and M. S. Waterman. Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli. J. Mol. Biol, 186:117-128, 1985.
-
(1985)
J. Mol. Biol
, vol.186
, pp. 117-128
-
-
Galas, D.J.1
Eggert, M.2
Waterman, M.S.3
-
9
-
-
0029041524
-
Compilation and analysis of Bacillus subtilis a-dependent promoter sequences: Evidence for extended contact between RNA polymerase and upstream promoter DNA
-
J. D. Helmann. Compilation and analysis of Bacillus subtilis a-dependent promoter sequences: evidence for extended contact between RNA polymerase and upstream promoter DNA. Nucleic Acids Res., 23:2351-2360, 1995.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 2351-2360
-
-
Helmann, J.D.1
-
10
-
-
0025372992
-
Identification of consensus patterns in unaligned DNA sequences known to be functionally related
-
G. Z. Hertz, G. W. Hartzell, and G. D. Stormo. Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput. Appl. Biosci., 6:81-92, 1990.
-
(1990)
Comput. Appl. Biosci
, vol.6
, pp. 81-92
-
-
Hertz, G.Z.1
Hartzell, G.W.2
Stormo, G.D.3
-
11
-
-
0022065258
-
The use of multiple alphabets in kappa-gene immunoglobulin DNA sequence comparisons
-
S. Karlin and G. Ghandour. The use of multiple alphabets in kappa-gene immunoglobulin DNA sequence comparisons. The EMBO Journal, 4:1217-1223, 1985.
-
(1985)
The EMBO Journal
, vol.4
, pp. 1217-1223
-
-
Karlin, S.1
Ghandour, G.2
-
12
-
-
0043162776
-
Efficient algorithms for molecular sequence analysis
-
S. Kaxlin, M. Morris, G. Ghandour, and M.-Y. Leung. Efficient algorithms for molecular sequence analysis. Proceedings of the National Academy of Science USA, 85:841-845, 1988.
-
(1988)
Proceedings of the National Academy of Science USA
, vol.85
, pp. 841-845
-
-
Kaxlin, S.1
Morris, M.2
Ghandour, G.3
Leung, M.-Y.4
-
13
-
-
0028181441
-
Hidden Markov model in computational biology. Applications to protein modeling
-
A. Krogh, M. Brown, I. S. Mian, K. Sjoelander, and D. Haussler. Hidden Markov model in computational biology. Applications to protein modeling. J. Mol. Biol, 235:1501-1531, 1994.
-
(1994)
J. Mol. Biol
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjoelander, K.4
Haussler, D.5
-
14
-
-
0024716276
-
An algorithm for finding a common structure shared by a family of strings
-
A. M. Landraud, J. F. Avril, and P. Chretienne. An algorithm for finding a common structure shared by a family of strings. IEEE Transactions on Pattern Analysis and Machine Intelligence, 11(8):890-895, 1989.
-
(1989)
IEEE Transactions on Pattern Analysis and Machine Intelligence
, vol.11
, Issue.8
, pp. 890-895
-
-
Landraud, A.M.1
Avril, J.F.2
Chretienne, P.3
-
15
-
-
0027912333
-
Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
-
C. E. Lawrence, S. F. Altschul, M. S. Boguski, J. S. Liu, A. F. Neuwald, and J. C. Wooton. Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, 262:208-214, 1993.
-
(1993)
Science
, vol.262
, pp. 208-214
-
-
Lawrence, C.E.1
Altschul, S.F.2
Boguski, M.S.3
Liu, J.S.4
Neuwald, A.F.5
Wooton, J.C.6
-
16
-
-
0025320805
-
An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences
-
C. E. Lawrence and A. A. Reilly. An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences. Proteins, 7:41-51, 1990.
-
(1990)
Proteins
, vol.7
, pp. 41-51
-
-
Lawrence, C.E.1
Reilly, A.A.2
-
17
-
-
0021101102
-
An efficient method for finding repeats in molecular sequences
-
H. M. Martinez. An efficient method for finding repeats in molecular sequences. Nucleic Acids Res., 11:4629-4634, 1983.
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 4629-4634
-
-
Martinez, H.M.1
-
18
-
-
0028270992
-
Detecting patterns in protein sequences
-
A. F. Neuwald and P. Green. Detecting patterns in protein sequences. J. Mol. Biol, 239:698-712, 1994.
-
(1994)
J. Mol. Biol
, vol.239
, pp. 698-712
-
-
Neuwald, A.F.1
Green, P.2
-
19
-
-
0024604147
-
Prediction motifs derived from cytosine methyltransferases
-
J. Posfai, A.S. Bhagwat, G. Posfai, and R.J. Roberts. Prediction motifs derived from cytosine methyltransferases. Nucl. Acids Res., 17:2421-2435, 1989.
-
(1989)
Nucl. Acids Res
, vol.17
, pp. 2421-2435
-
-
Posfai, J.1
Bhagwat, A.S.2
Posfai, G.3
Roberts, R.J.4
-
20
-
-
0025326950
-
Relations between protein sequence and structure and their significance
-
M. J. Rooman, J. Rodriguez, and S. J. Wodak. Relations between protein sequence and structure and their significance. J. Mol. Biol., 213:337-350, 1990.
-
(1990)
J. Mol. Biol
, vol.213
, pp. 337-350
-
-
Rooman, M.J.1
Rodriguez, J.2
Wodak, S.J.3
-
21
-
-
0024078021
-
Identification of predictive sequence motifs limited by protein structure database size
-
M. J. Rooman and S. J. Wodak. Identification of predictive sequence motifs limited by protein structure database size. Nature, 335:45-49, 1988.
-
(1988)
Nature
, vol.335
, pp. 45-49
-
-
Rooman, M.J.1
Wodak, S.J.2
-
22
-
-
84957702815
-
-
Vinas del Mar, Chili, Second South American Workshop on String Processing
-
M. F. Sagot, V. Escalier, A. Viaxi, and H. Soldano. Searching for repeated words in a text allowing for mismatches and gaps. Vinas del Mar, Chili, 1995. Second South American Workshop on String Processing.
-
(1995)
Searching for Repeated Words in a Text Allowing for Mismatches and Gaps
-
-
Sagot, M.F.1
Escalier, V.2
Viaxi, A.3
Soldano, H.4
-
25
-
-
67649101173
-
Multiple comparison: A peptide matching approach
-
Helsinki, Finland, Springer-Verlag. to appear in Theor. Comput. Science
-
M. F. Sagot, A. Viari, and H. Soldano. Multiple comparison: a peptide matching approach. In Proc. Combinatorial Pattern Matching Conf. 95, volume 907 of Lecture Notes in Computer Science, pages 366-385, Helsinki, Finland, 1995. Springer-Verlag. to appear in Theor. Comput. Science.
-
(1995)
Proc. Combinatorial Pattern Matching Conf. 95, Volume 907 of Lecture Notes in Computer Science
, pp. 366-385
-
-
Sagot, M.F.1
Viari, A.2
Soldano, H.3
-
26
-
-
0028174103
-
Identification of sequence motifs from a set of proteins with related function
-
M. A. S. Saqi and M. J. E. Sternberg. Identification of sequence motifs from a set of proteins with related function. Protein Eng., 7:165-171, 1994.
-
(1994)
Protein Eng
, vol.7
, pp. 165-171
-
-
Saqi, M.1
Sternberg, M.J.2
-
27
-
-
0026100921
-
A workbench for multiple alignment construction and analysis
-
G. D. Schuler, S. F. Altschul, and D. J. Lipman. A workbench for multiple alignment construction and analysis. Proteins, 9:180-190, 1991.
-
(1991)
Proteins
, vol.9
, pp. 180-190
-
-
Schuler, G.D.1
Altschul, S.F.2
Lipman, D.J.3
-
28
-
-
0026658874
-
A systematic search for protein signature sequences
-
R. P. Sheridan and R. Venkataraghavan. A systematic search for protein signature sequences. Proteins, 14:16-28, 1992.
-
(1992)
Proteins
, vol.14
, pp. 16-28
-
-
Sheridan, R.P.1
Venkataraghavan, R.2
-
30
-
-
0025141443
-
Automatic generation of primary sequence patterns from sets of related protein sequences
-
R. F. Smith and T. S. Smith. Automatic generation of primary sequence patterns from sets of related protein sequences. Proceedings of the National Academy of Science USA, 87:118-122, 1990.
-
(1990)
Proceedings of the National Academy of Science USA
, vol.87
, pp. 118-122
-
-
Smith, R.F.1
Smith, T.S.2
-
31
-
-
0023045778
-
A multiple sequence alignment program
-
E. Sobel and H. M. Martinez. A multiple sequence alignment program. Nucleic Acids Res., 14:363-374, 1986.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 363-374
-
-
Sobel, E.1
Martinez, H.M.2
-
32
-
-
0025342573
-
Consensus patterns in DNA
-
G. D. Stormo. Consensus patterns in DNA. Meth. Enzymol., 183:211-221, 1990.
-
(1990)
Meth. Enzymol
, vol.183
, pp. 211-221
-
-
Stormo, G.D.1
-
33
-
-
0028091659
-
Detection of conserved segments in proteins: Iterative scanning of sequence databases with alignment blocks
-
R. L. Tatusov, S. F. Altschul, and E. V. Koonin. Detection of conserved segments in proteins: Iterative scanning of sequence databases with alignment blocks. Proceedings of the National Academy of Science USA, 91:12091-12095, 1994.
-
(1994)
Proceedings of the National Academy of Science USA
, vol.91
, pp. 12091-12095
-
-
Tatusov, R.L.1
Altschul, S.F.2
Koonin, E.V.3
-
34
-
-
0028129799
-
A simple tool to search for sequence motifs that are conserved in Blast outputs
-
R. L. Tatusov and E. V. Koonin. A simple tool to search for sequence motifs that are conserved in Blast outputs. Comput. Appl. Biosci., 10:0-0, 1994.
-
(1994)
Comput. Appl. Biosci
, vol.10
-
-
Tatusov, R.L.1
Koonin, E.V.2
-
35
-
-
0024046573
-
Pattern matching methods in protein sequence comparison and structure prediction
-
W. R. Taylor. Pattern matching methods in protein sequence comparison and structure prediction. Protein Eng., 2(2):77-86, 1988.
-
(1988)
Protein Eng
, vol.2
, Issue.2
, pp. 77-86
-
-
Taylor, W.R.1
-
36
-
-
0024918221
-
A template based method of pattern matching in protein sequences
-
W. R. Taylor. A template based method of pattern matching in protein sequences. Prog. Biophys. Molec. Biol, 54:159-252, 1989.
-
(1989)
Prog. Biophys. Molec. Biol
, vol.54
, pp. 159-252
-
-
Taylor, W.R.1
-
37
-
-
3142625286
-
Templates, consensus patterns and motifs
-
W. R. Taylor and D. T. Jones. Templates, consensus patterns and motifs. Curr. Opin. Struct. Biol., 1:327-333, 1991.
-
(1991)
Curr. Opin. Struct. Biol
, vol.1
, pp. 327-333
-
-
Taylor, W.R.1
Jones, D.T.2
-
38
-
-
0000329809
-
General methods of sequence comparison
-
M. S. Waterman. General methods of sequence comparison. Bull. Math. Biol., 46:473-500, 1984.
-
(1984)
Bull. Math. Biol
, vol.46
, pp. 473-500
-
-
Waterman, M.S.1
-
39
-
-
0023057161
-
Multiple sequence alignments by consensus
-
M. S. Waterman. Multiple sequence alignments by consensus. Nucleic Acids Res., 14:9095-9102, 1986.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 9095-9102
-
-
Waterman, M.S.1
-
40
-
-
0041748378
-
Consensus patterns in sequences
-
M. S. Waterman, editor, CRC Press
-
M. S. Waterman. Consensus patterns in sequences. In M. S. Waterman, editor, Mathematical Methods for DNA Sequences, pages 93-116. CRC Press, 1989.
-
(1989)
Mathematical Methods for DNA Sequences
, pp. 93-116
-
-
Waterman, M.S.1
-
41
-
-
0025343113
-
Consensus methods for DNA and protein sequence alignment
-
M. S. Waterman. Consensus methods for DNA and protein sequence alignment. In Meth. Enzymol, volume 183, pages 221-237. 1990.
-
(1990)
Meth. Enzymol
, vol.183
, pp. 221-237
-
-
Waterman, M.S.1
-
42
-
-
0021665479
-
Pattern recognition in several sequences: Consensus and alignment
-
M. S. Waterman, R. Arratia, and D. J. Galas. Pattern recognition in several sequences: consensus and alignment. Bull. Math. Biol, 46:515-527, 1984.
-
(1984)
Bull. Math. Biol
, vol.46
, pp. 515-527
-
-
Waterman, M.S.1
Arratia, R.2
Galas, D.J.3
|