Complete genome sequence of Streptomyces reticuli, an efficient degrader of crystalline cellulose

Journal of Biotechnology

Volumn 222, Issue , 2016, Pages 13-14

  Wibberg, Daniel ^a   Al Dilaimi, Arwa ^a   Busche, Tobias ^a   Wedderhoff, Ina ^b   Schrempf, Hildgund ^b   Kalinowksi, Jörn ^a   Ortiz de Orué Lucana, Darío ^b  

^a BIELEFELD UNIVERSITY   (Germany)

^b UNIVERSITY OF OSNABRÜCK   (Germany)

Author keywords

Cellulases; Polysaccharide binding proteins; Secondary metabolites; Streptomycetes

Indexed keywords

BACTERIA; BINS; CELLULOSE; CRYSTALLINE MATERIALS; DNA; GENETIC ENGINEERING; METABOLITES; PROTEINS;

BINDING PROTEINS; CELLULASES; COMPLETE GENOMES; CRYSTALLINE CELLULOSE; GENOME SEQUENCES; PRELIMINARY ANALYSIS; SECONDARY METABOLITES; STREPTOMYCETES;

GENES;

CARBOHYDRATE; CELLULOSE; CRYSTALLIN; NONRIBOSOMAL POLYPEPTIDE SYNTHASE; POLYKETIDE SYNTHASE; POLYSACCHARIDE; SYNTHETASE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENOME; CHROMOSOME; DEGRADATION; GENE CLUSTER; GENE SEQUENCE; MELANOGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN BINDING; STREPTOMYCES; STREPTOMYCES RETICULI; GENETICS; METABOLISM;

CELLULASE; GENES; POLYSACCHARIDES; PROTEINS;

CELLULOSE; GENOME, BACTERIAL; STREPTOMYCES;

EID: 84957572085     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2016.02.002     Document Type: Article

References (12)

1. Chater K.F., Biró S., Lee K.J., Palmer T., Schrempf H. The complex extracellular biology of Streptomyces. FEMS Microbiol. Rev. 2010, 34:171-198.
2. Meyer F., Goesmann A., McHardy A.C., Bartels D., Bekel T., Clausen J., Kalinowski J., Linke B., Rupp O., Giegerich R., Pühler A. GenDB-an open source genome annotation system for prokaryote genomes. Nucleic Acids Res. 2003, 31:2187-2195.
3. Ortiz de Orué Lucana D., Zou P., Nierhaus M., Schrempf H. Identification of a novel two-component system SenS/SenR modulating the production of the catalase-peroxidase CpeB and the haem-binding protein HbpS in Streptomyces reticuli. Microbiology 2005, 151:3603-3614.
4. Ortiz de Orué Lucana D., Groves M.R. The three-component signalling system HbpS-SenS-SenR as an example of a redox sensing pathway in bacteria. Amino Acids 2009, 37:479-486.
5. Ortiz de Orué Lucana D., Fedosov S.N., Wedderhoff I., Che E.N., Torda A.E. The extracellular heme-binding protein HbpS from the soil bacterium Streptomyces reticuli is an aquo-cobalamin binder. J. Biol. Chem. 2014, 289:34214-34228.
6. Schlösser A., Schrempf H. A lipid-anchored binding protein is a component of an ATP-dependent cellobiose/cellotriose-transport system from the cellulose degrader Streptomyces reticuli. Eur. J. Biochem. 1996, 242:332-338.
7. Schrempf H. Plasmid loss and changes within the chromosomal DNA of Streptomyces reticuli. J. Bacteriol. 1982, 151:701-707.
8. Weber T., Blin K., Duddela S., Krug D., Kim H.U., Bruccoleri R., Lee S.Y., Fischbach M.A., Müller R., Wohlleben W., Breitling R., Takano E., Medema M.H. antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters. Nucleic Acids Res. 2015, 43:W237-243.
9. Wibberg D., Blom J., Jaenicke S., Kollin F., Rupp O., Scharf B., Schneiker-Bekel S., Sczcepanowski R., Goesmann A., Setubal J.C., Schmitt R., Pühler A., Schlüter A. Complete genome sequencing of Agrobacterium sp. H13-3 the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. J. Biotechnol. 2011, 155:50-62.
10. Yin Y., Mao X., Yang J., Chen X., Mao F., Xu Y. dbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. 2012, 40(Web Server issue):W445-W451.
11. Walter S., Schrempf H. Oligomerization, membrane anchoring, and cellulose-binding characteristics of AbpS, a receptor-like Streptomyces protein. J. Biol. Chem. 2003, 278:26639-26647.
12. Zou P., Schrempf H. The heme-independent manganese-peroxidase activity depends on the presence of the C-terminal domain within the Streptomyces reticuli catalase-peroxidase CpeB. Eur. J. Biochem. 2000, 267:2840-2849.