-
1
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
The 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
2
-
-
84975795680
-
An integrated map of genetic variation from 1, 092 human genomes
-
The 1000 Genomes Project Consortium. 2012. An integrated map of genetic variation from 1, 092 human genomes. Nature 491: 56-65.
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
-
3
-
-
33847627621
-
Eurasian and African mitochondrial DNA influences in the Saudi Arabian population
-
Abu-Amero KK, González AM, Larruga JM, Bosley TM, Cabrera VM. 2007. Eurasian and African mitochondrial DNA influences in the Saudi Arabian population. BMC Evol Biol 7: 32.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 32
-
-
Abu-Amero, K.K.1
González, A.M.2
Larruga, J.M.3
Bosley, T.M.4
Cabrera, V.M.5
-
5
-
-
70350714553
-
Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions
-
Abu-Amero KK, Hellani A, González AM, Larruga JM, Cabrera VM, Underhill PA. 2009. Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions. BMC Genet 10: 59.
-
(2009)
BMC Genet
, vol.10
, pp. 59
-
-
Abu-Amero, K.K.1
Hellani, A.2
González, A.M.3
Larruga, J.M.4
Cabrera, V.M.5
Underhill, P.A.6
-
6
-
-
69749099417
-
Fast model-based estimation of ancestry in unrelated individuals
-
Alexander DH, Novembre J, Lange K. 2009. Fast model-based estimation of ancestry in unrelated individuals. Genome Res 19: 1655-1664.
-
(2009)
Genome Res
, vol.19
, pp. 1655-1664
-
-
Alexander, D.H.1
Novembre, J.2
Lange, K.3
-
7
-
-
84884170209
-
Genetic substructure of Kuwaiti population reveals migration history
-
Alsmadi O, Thareja G, Alkayal F, Rajagopalan R, John SE, Hebbar P, Behbehani K, Thanaraj TA. 2013. Genetic substructure of Kuwaiti population reveals migration history. PLoS One 8: e74913.
-
(2013)
PLoS One
, vol.8
, pp. e74913
-
-
Alsmadi, O.1
Thareja, G.2
Alkayal, F.3
Rajagopalan, R.4
John, S.E.5
Hebbar, P.6
Behbehani, K.7
Thanaraj, T.A.8
-
8
-
-
84902449505
-
Genome at juncture of early human migration: A systematic analysis of two whole genomes and thirteen exomes from Kuwaiti population subgroup of inferred Saudi Arabian tribe ancestry
-
Alsmadi O, John SE, Thareja G, Hebbar P, Antony D, Behbehani K, Thanaraj TA. 2014. Genome at juncture of early human migration: a systematic analysis of two whole genomes and thirteen exomes from Kuwaiti population subgroup of inferred Saudi Arabian tribe ancestry. PLoS One 9: e99069.
-
(2014)
PLoS One
, vol.9
, pp. e99069
-
-
Alsmadi, O.1
John, S.E.2
Thareja, G.3
Hebbar, P.4
Antony, D.5
Behbehani, K.6
Thanaraj, T.A.7
-
9
-
-
84902292888
-
Contrasting X-linked and autosomal diversity across 14 human populations
-
Arbiza L, Gottipati S, Siepel A, Keinan A. 2014. Contrasting X-linked and autosomal diversity across 14 human populations. Am J Hum Genet 94: 827-844.
-
(2014)
Am J Hum Genet
, vol.94
, pp. 827-844
-
-
Arbiza, L.1
Gottipati, S.2
Siepel, A.3
Keinan, A.4
-
10
-
-
79251568290
-
The southern route "out of Africa": Evidence for an early expansion of modern humans into Arabia
-
Armitage SJ, Jasim SA, Marks AE, Parker AG, Usik VI, Uerpmann HP. 2011. The southern route "out of Africa": evidence for an early expansion of modern humans into Arabia. Science 331: 453-456.
-
(2011)
Science
, vol.331
, pp. 453-456
-
-
Armitage, S.J.1
Jasim, S.A.2
Marks, A.E.3
Parker, A.G.4
Usik, V.I.5
Uerpmann, H.P.6
-
11
-
-
77954542018
-
The genome-wide structure of the Jewish people
-
Behar DM, Yunusbayev B, Metspalu M, Metspalu E, Rosset S, Parik J, Rootsi S, Chaubey G, Kutuev I, Yudkovsky G, et al. 2010. The genome-wide structure of the Jewish people. Nature 466: 238-242.
-
(2010)
Nature
, vol.466
, pp. 238-242
-
-
Behar, D.M.1
Yunusbayev, B.2
Metspalu, M.3
Metspalu, E.4
Rosset, S.5
Parik, J.6
Rootsi, S.7
Chaubey, G.8
Kutuev, I.9
Yudkovsky, G.10
-
12
-
-
0023163377
-
Mitochondrial DNA and human evolution
-
Cann RL, Stoneking M, Wilson AC. 1987. Mitochondrial DNA and human evolution. Nature 325: 31-36.
-
(1987)
Nature
, vol.325
, pp. 31-36
-
-
Cann, R.L.1
Stoneking, M.2
Wilson, A.C.3
-
13
-
-
0037370384
-
The application of molecular genetic approaches to the study of human evolution
-
Cavalli-Sforza LL, Feldman MW. 2003. The application of molecular genetic approaches to the study of human evolution. Nat Genet 33(Suppl): 266-275.
-
(2003)
Nat Genet
, vol.33
, pp. 266-275
-
-
Cavalli-Sforza, L.L.1
Feldman, M.W.2
-
14
-
-
84930213392
-
Second-generation PLINK: Rising to the challenge of larger and richer datasets
-
Chang CC, Chow CC, Tellier LC, Vattikuti S, Purcell SM, Lee JJ. 2015. Second-generation PLINK: rising to the challenge of larger and richer datasets. Gigascience 4: 7.
-
(2015)
Gigascience
, vol.4
, pp. 7
-
-
Chang, C.C.1
Chow, C.C.2
Tellier, L.C.3
Vattikuti, S.4
Purcell, S.M.5
Lee, J.J.6
-
15
-
-
42549115175
-
Fast NJ-like algorithms to deal with incomplete distance matrices
-
Criscuolo A, Gascuel O. 2008. Fast NJ-like algorithms to deal with incomplete distance matrices. BMC Bioinformatics 9: 166.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 166
-
-
Criscuolo, A.1
Gascuel, O.2
-
16
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, et al. 2011. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43: 491-498.
-
(2011)
Nat Genet
, vol.43
, pp. 491-498
-
-
Ma, D.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
Philippakis, A.A.7
Del Angel, G.8
Ma, R.9
Hanna, M.10
-
18
-
-
77953032930
-
Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
-
Excoffier L, Lischer HE. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10: 564-567.
-
(2010)
Mol Ecol Resour
, vol.10
, pp. 564-567
-
-
Excoffier, L.1
Lischer, H.E.2
-
19
-
-
0026681074
-
Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
-
Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
-
(1992)
Genetics
, vol.131
, pp. 479-491
-
-
Excoffier, L.1
Smouse, P.E.2
Quattro, J.M.3
-
21
-
-
84914688940
-
Genome sequence of a 45, 000-year-old modern human from western Siberia
-
Fu Q Li H, Moorjani P, Jay F, Slepchenko SM, Bondarev AA, Johnson PL, Aximu-Petri A, Prüfer K, de FC, et al. 2014. Genome sequence of a 45, 000-year-old modern human from western Siberia. Nature 514: 445-449.
-
(2014)
Nature
, vol.514
, pp. 445-449
-
-
Fu Li Q, H.1
Moorjani, P.2
Jay, F.3
Slepchenko, S.M.4
Bondarev, A.A.5
Johnson, P.L.6
Aximu-Petri, A.7
Prüfer, K.8
De FC9
-
22
-
-
79960899810
-
Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing
-
Gottipati S, Arbiza L, Siepel A, Clark AG, Keinan A. 2011. Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing. Nat Genet 43: 741-743.
-
(2011)
Nat Genet
, vol.43
, pp. 741-743
-
-
Gottipati, S.1
Arbiza, L.2
Siepel, A.3
Clark, A.G.4
Keinan, A.5
-
23
-
-
80053386624
-
Bayesian inference of ancient human demography from individual genome sequences
-
Gronau I, Hubisz MJ, Gulko B, Danko CG, Siepel A. 2011. Bayesian inference of ancient human demography from individual genome sequences. Nat Genet 43: 1031-1034.
-
(2011)
Nat Genet
, vol.43
, pp. 1031-1034
-
-
Gronau, I.1
Hubisz, M.J.2
Gulko, B.3
Danko, C.G.4
Siepel, A.5
-
24
-
-
0031955537
-
Out of Africa and back again: Nested cladistic analysis of human y chromosome variation
-
Hammer MF, Karafet T, Rasanayagam A, Wood ET, Altheide TK, Jenkins T, Griffiths RC, Templeton AR, Zegura SL. 1998. Out of Africa and back again: nested cladistic analysis of human Y chromosome variation. Mol Biol Evol 15: 427-441.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 427-441
-
-
Hammer, M.F.1
Karafet, T.2
Rasanayagam, A.3
Wood, E.T.4
Altheide, T.K.5
Jenkins, T.6
Griffiths, R.C.7
Templeton, A.R.8
Zegura, S.L.9
-
26
-
-
84927165574
-
Levantine cranium from Manot Cave (Israel) foreshadows the first European modern humans
-
Hershkovitz I, Marder O, Ayalon A, Bar-Matthews M, Yasur G, Boaretto E, Caracuta V, Alex B, Frumkin A, Goder-Goldberger M, et al. 2015. Levantine cranium from Manot Cave (Israel) foreshadows the first European modern humans. Nature 520: 216-219.
-
(2015)
Nature
, vol.520
, pp. 216-219
-
-
Hershkovitz, I.1
Marder, O.2
Ayalon, A.3
Bar-Matthews, M.4
Yasur, G.5
Boaretto, E.6
Caracuta, V.7
Alex, B.8
Frumkin, A.9
Goder-Goldberger, M.10
-
27
-
-
84890319953
-
HapFABIA: Identification of very short segments of identity by descent characterized by rare variants in large sequencing data
-
Hochreiter S. 2013. HapFABIA: identification of very short segments of identity by descent characterized by rare variants in large sequencing data. Nucleic Acids Res 41: e202.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. e202
-
-
Hochreiter, S.1
-
29
-
-
77955067694
-
Population genetic structure of the people of Qatar
-
Hunter-Zinck H, Musharoff S, Salit J, Al-Ali KA, Chouchane L, Gohar A, Matthews R, Butler MW, Fuller J, Hackett NR, et al. 2010. Population genetic structure of the people of Qatar. Am J Hum Genet 87: 17-25.
-
(2010)
Am J Hum Genet
, vol.87
, pp. 17-25
-
-
Hunter-Zinck, H.1
Musharoff, S.2
Salit, J.3
Al-Ali, K.A.4
Chouchane, L.5
Gohar, A.6
Matthews, R.7
Butler, M.W.8
Fuller, J.9
Hackett, N.R.10
-
30
-
-
0042766533
-
The human y chromosome: An evolutionary marker comes of age
-
Jobling MA, Tyler-Smith C. 2003. The human Y chromosome: an evolutionary marker comes of age. Nat Rev Genet 4: 598-612.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 598-612
-
-
Ma, J.1
Tyler-Smith, C.2
-
31
-
-
84922942901
-
Kuwaiti population subgroup of nomadic Bedouin ancestry-whole genome sequence and analysis
-
John SE, Thareja G, Hebbar P, Behbehani K, Thanaraj TA, Alsmadi O. 2015. Kuwaiti population subgroup of nomadic Bedouin ancestry-whole genome sequence and analysis. Genom Data 3: 116-127.
-
(2015)
Genom Data
, vol.3
, pp. 116-127
-
-
John, S.E.1
Thareja, G.2
Hebbar, P.3
Behbehani, K.4
Thanaraj, T.A.5
Alsmadi, O.6
-
32
-
-
84947597058
-
-
arXiv: 1407.7988
-
Jostins L, Xu Y, McCarthy S, Ayub Q Durbin R, Barrett J, Tyler-Smith C. 2014. YFitter: maximum likelihood assignment of Y chromosome hap-logroups from low-coverage sequence data. arXiv: 1407.7988.
-
(2014)
YFitter: Maximum Likelihood Assignment of y Chromosome Hap-logroups from Low-coverage Sequence Data
-
-
Jostins, L.1
Xu, Y.2
McCarthy, S.3
Ayub Durbin Q, R.4
Barrett, J.5
Tyler-Smith, C.6
-
33
-
-
78650459836
-
HaploGrep: A fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups
-
Kloss-Brandstätter A, Pacher D, Schönherr S, Weissensteiner H, Binna R, Specht G, Kronenberg F. 2011. HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups. Hum Mutat 32: 25-32.
-
(2011)
Hum Mutat
, vol.32
, pp. 25-32
-
-
Kloss-Brandstätter, A.1
Pacher, D.2
Schönherr, S.3
Weissensteiner, H.4
Binna, R.5
Specht, G.6
Kronenberg, F.7
-
34
-
-
84891418754
-
The behavior of admixed populations in neighbor-joining inference of population trees
-
Kopelman NM, Stone L, Gascuel O, Rosenberg NA. 2013. The behavior of admixed populations in neighbor-joining inference of population trees. Pac Symp Biocomput 273-284.
-
(2013)
Pac Symp Biocomput
, pp. 273-284
-
-
Kopelman, N.M.1
Stone, L.2
Gascuel, O.3
Rosenberg, N.A.4
-
35
-
-
84907803675
-
Ancient human genomes suggest three ancestral populations for present-day Europeans
-
Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, et al. 2014. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature 513: 409-413.
-
(2014)
Nature
, vol.513
, pp. 409-413
-
-
Lazaridis, I.1
Patterson, N.2
Mittnik, A.3
Renaud, G.4
Mallick, S.5
Kirsanow, K.6
Sudmant, P.H.7
Schraiber, J.G.8
Castellano, S.9
Lipson, M.10
-
36
-
-
79960914105
-
Inference of human population history from individual whole-genome sequences
-
Li H, Durbin R. 2011. Inference of human population history from individual whole-genome sequences. Nature 475: 493-496.
-
(2011)
Nature
, vol.475
, pp. 493-496
-
-
Li, H.1
Durbin, R.2
-
37
-
-
84876362318
-
Inferring admixture histories of human populations using linkage disequilibrium
-
Loh PR, Lipson M, Patterson N, Moorjani P, Pickrell JK, Reich D, Berger B. 2013. Inferring admixture histories of human populations using linkage disequilibrium. Genetics 193: 1233-1254.
-
(2013)
Genetics
, vol.193
, pp. 1233-1254
-
-
Loh, P.R.1
Lipson, M.2
Patterson, N.3
Moorjani, P.4
Pickrell, J.K.5
Reich, D.6
Berger, B.7
-
38
-
-
78149265272
-
Robust relationship inference in genome-wide association studies
-
Manichaikul A, Mychaleckyj JC, Rich SS, Daly K, Sale M, Chen WM. 2010. Robust relationship inference in genome-wide association studies. Bioinformatics 26: 2867-2873.
-
(2010)
Bioinformatics
, vol.26
, pp. 2867-2873
-
-
Manichaikul, A.1
Mychaleckyj, J.C.2
Rich, S.S.3
Daly, K.4
Sale, M.5
Chen, W.M.6
-
39
-
-
84892803492
-
Deciphering the fine-structure of tribal admixture in the Bedouin population using genomic data
-
Markus B, Alshafee I, Birk OS. 2014. Deciphering the fine-structure of tribal admixture in the Bedouin population using genomic data. Heredity (Edinb.) 112: 182-189.
-
(2014)
Heredity (Edinb.)
, vol.112
, pp. 182-189
-
-
Markus, B.1
Alshafee, I.2
Birk, O.S.3
-
40
-
-
84926320923
-
Demography and the age of rare variants
-
Mathieson I, McVean G. 2014. Demography and the age of rare variants. PLoS Genet 10: e1004528.
-
(2014)
PLoS Genet
, vol.10
, pp. e1004528
-
-
Mathieson, I.1
McVean, G.2
-
41
-
-
0033912689
-
Statistical tests for detection of misspecified relationships by use of genome-screen data
-
McPeek MS, Sun L. 2000. Statistical tests for detection of misspecified relationships by use of genome-screen data. Am J Hum Genet 66:1076-1094.
-
(2000)
Am J Hum Genet
, vol.66
, pp. 1076-1094
-
-
McPeek, M.S.1
Sun, L.2
-
42
-
-
84924092013
-
Increased rate of deleterious variants in long runs of homozygosity of an inbred population from Qatar
-
Mezzavilla M, Vozzi D, Badii R, Alkowari MK, Abdulhadi K, Girotto G, Gasparini P. 2015. Increased rate of deleterious variants in long runs of homozygosity of an inbred population from Qatar. Hum Hered 79: 14-19.
-
(2015)
Hum Hered
, vol.79
, pp. 14-19
-
-
Mezzavilla, M.1
Vozzi, D.2
Badii, R.3
Alkowari, M.K.4
Abdulhadi, K.5
Girotto, G.6
Gasparini, P.7
-
43
-
-
0030776801
-
Multilocus genotypes, a tree of individuals, and human evolutionary history
-
Mountain JL, Cavalli-Sforza LL. 1997. Multilocus genotypes, a tree of individuals, and human evolutionary history. Am J Hum Genet 61: 705-718.
-
(1997)
Am J Hum Genet
, vol.61
, pp. 705-718
-
-
Mountain, J.L.1
Cavalli-Sforza, L.L.2
-
44
-
-
84862678584
-
Inferring genome-wide patterns of admixture in Qataris using fifty-five ancestral populations
-
Omberg L, Salit J, Hackett N, Fuller J, Matthew R, Chouchane L, Rodriguez-Flores JL, Bustamante C, Crystal RG, Mezey JG. 2012. Inferring genome-wide patterns of admixture in Qataris using fifty-five ancestral populations. BMC Genet 13: 49.
-
(2012)
BMC Genet
, vol.13
, pp. 49
-
-
Omberg, L.1
Salit, J.2
Hackett, N.3
Fuller, J.4
Matthew, R.5
Chouchane, L.6
Rodriguez-Flores, J.L.7
Bustamante, C.8
Crystal, R.G.9
Mezey, J.G.10
-
45
-
-
1042304216
-
APE: Analyses of phylogenetics and evolution in R language
-
Paradis E, Claude J, Strimmer K. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20: 289-290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
46
-
-
33745591114
-
Genetic evidence for complex speciation of humans and chimpanzees
-
Patterson N, Richter DJ, Gnerre S, Lander ES, Reich D. 2006. Genetic evidence for complex speciation of humans and chimpanzees. Nature 441: 1103-1108.
-
(2006)
Nature
, vol.441
, pp. 1103-1108
-
-
Patterson, N.1
Richter, D.J.2
Gnerre, S.3
Lander, E.S.4
Reich, D.5
-
47
-
-
84869057650
-
Ancient admixture in human history
-
Patterson N, Moorjani P, Luo Y, Mallick S, Rohland N, Zhan Y, Genschoreck T, Webster T, Reich D. 2012. Ancient admixture in human history. Genetics 192: 1065-1093.
-
(2012)
Genetics
, vol.192
, pp. 1065-1093
-
-
Patterson, N.1
Moorjani, P.2
Luo, Y.3
Mallick, S.4
Rohland, N.5
Zhan, Y.6
Genschoreck, T.7
Webster, T.8
Reich, D.9
-
49
-
-
84869026948
-
Inference of population splits and mixtures from genome-wide allele frequency data
-
Pickrell JK, Pritchard JK. 2012. Inference of population splits and mixtures from genome-wide allele frequency data. PLoS Genet 8: e1002967.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002967
-
-
Pickrell, J.K.1
Pritchard, J.K.2
-
50
-
-
84894349598
-
Ancient west Eurasian ancestry in southern and eastern Africa
-
Pickrell JK, Patterson N, Loh PR, Lipson M, Berger B, Stoneking M, Pakendorf B, Reich D. 2014. Ancient west Eurasian ancestry in southern and eastern Africa. Proc Natl Acad Sci 111: 2632-2637.
-
(2014)
Proc Natl Acad Sci
, vol.111
, pp. 2632-2637
-
-
Pickrell, J.K.1
Patterson, N.2
Loh, P.R.3
Lipson, M.4
Berger, B.5
Stoneking, M.6
Pakendorf, B.7
Reich, D.8
-
51
-
-
84881043944
-
Sequencing y chromosomes resolves discrepancy in time to common ancestor of males versus females
-
Poznik GD, Henn BM, Yee MC, Sliwerska E, Euskirchen GM, Lin AA, Snyder M, Quintana-Murci L, Kidd JM, Underhill PA, et al. 2013. Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females. Science 341: 562-565.
-
(2013)
Science
, vol.341
, pp. 562-565
-
-
Poznik, G.D.1
Henn, B.M.2
Yee, M.C.3
Sliwerska, E.4
Euskirchen, G.M.5
Lin, A.A.6
Snyder, M.7
Quintana-Murci, L.8
Kidd, J.M.9
Underhill, P.A.10
-
52
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D. 2006. Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38: 904-909.
-
(2006)
Nat Genet
, vol.38
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
Weinblatt, M.E.4
Shadick, N.A.5
Reich, D.6
-
53
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
54
-
-
84892365780
-
The complete genome sequence of a Neanderthal from the Altai Mountains
-
Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, et al. 2014. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature 505: 43-49.
-
(2014)
Nature
, vol.505
, pp. 43-49
-
-
Prüfer, K.1
Racimo, F.2
Patterson, N.3
Jay, F.4
Sankararaman, S.5
Sawyer, S.6
Heinze, A.7
Renaud, G.8
Sudmant, P.H.9
De Filippo, C.10
-
55
-
-
34548292504
-
PLINK: A tool set for whole-genome association and population-based linkage analyses
-
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, et al. 2007. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559-575.
-
(2007)
Am J Hum Genet
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ma, F.5
Bender, D.6
Maller, J.7
Sklar, P.8
De Bakker, P.I.9
Daly, M.J.10
-
56
-
-
84863304598
-
-
R Foundation for Statistical Computing, Vienna, Austria
-
R Core Team. 2014. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www. R-project.org/.
-
(2014)
R: A Language and Environment for Statistical Computing
-
-
-
57
-
-
80053581951
-
An Aboriginal Australian genome reveals separate human dispersals into Asia
-
Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgreen S, Metspalu M, Jombart T, et al. 2011. An Aboriginal Australian genome reveals separate human dispersals into Asia. Science 334: 94-98.
-
(2011)
Science
, vol.334
, pp. 94-98
-
-
Rasmussen, M.1
Guo, X.2
Wang, Y.3
Lohmueller, K.E.4
Rasmussen, S.5
Albrechtsen, A.6
Skotte, L.7
Lindgreen, S.8
Metspalu, M.9
Jombart, T.10
-
58
-
-
84876451303
-
Exome sequencing of only seven Qataris identifies potentially deleterious variants in the Qatari population
-
Rodriguez-Flores JL, Fuller J, Hackett NR, Salit J, Malek JA, Al-Dous E, Chouchane L, Zirie M, Jayoussi A, Mahmoud MA, et al. 2012. Exome sequencing of only seven Qataris identifies potentially deleterious variants in the Qatari population. PLoS One 7: e47614.
-
(2012)
PLoS One
, vol.7
, pp. e47614
-
-
Rodriguez-Flores, J.L.1
Fuller, J.2
Hackett, N.R.3
Salit, J.4
Malek, J.A.5
Al-Dous, E.6
Chouchane, L.7
Zirie, M.8
Jayoussi, A.9
Ma, M.10
-
59
-
-
84890797636
-
Exome sequencing identifies potential risk variants for Mendelian disorders at high prevalence in Qatar
-
Rodriguez-Flores JL, Fakhro K, Hackett NR, Salit J, Fuller J, Agosto-Perez F, Gharbiah M, Malek JA, Zirie M, Jayyousi A, et al. 2014. Exome sequencing identifies potential risk variants for Mendelian disorders at high prevalence in Qatar. Hum Mutat 35: 105-116.
-
(2014)
Hum Mutat
, vol.35
, pp. 105-116
-
-
Rodriguez-Flores, J.L.1
Fakhro, K.2
Hackett, N.R.3
Salit, J.4
Fuller, J.5
Agosto-Perez, F.6
Gharbiah, M.7
Malek, J.A.8
Zirie, M.9
Jayyousi, A.10
-
60
-
-
34247561320
-
Mitochondrial DNA geneflow indicates preferred usage of the Levant Corridor over the Horn of Africa passageway
-
Rowold DJ, Luis JR, Terreros MC, Herrera RJ. 2007. Mitochondrial DNA geneflow indicates preferred usage of the Levant Corridor over the Horn of Africa passageway. J Hum Genet 52: 436-447.
-
(2007)
J Hum Genet
, vol.52
, pp. 436-447
-
-
Rowold, D.J.1
Luis, J.R.2
Terreros, M.C.3
Herrera, R.J.4
-
61
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
62
-
-
75349095752
-
Consanguinity in Qatar: Knowledge, attitude and practice in a population born between 1946 and 1991
-
Sandridge AL, Takeddin J, Al-Kaabi E, Frances Y. 2010. Consanguinity in Qatar: knowledge, attitude and practice in a population born between 1946 and 1991. J Biosoc Sci 42: 59-82.
-
(2010)
J Biosoc Sci
, vol.42
, pp. 59-82
-
-
Sandridge, A.L.1
Takeddin, J.2
Al-Kaabi, E.3
Frances, Y.4
-
63
-
-
84905572361
-
Inferring human population size and separation history from multiple genome sequences
-
Schiffels S, Durbin R. 2014. Inferring human population size and separation history from multiple genome sequences. Nat Genet 46: 919-925.
-
(2014)
Nat Genet
, vol.46
, pp. 919-925
-
-
Schiffels, S.1
Durbin, R.2
-
64
-
-
58149095535
-
Y chromosome evidence of earliest modern human settlement in East Asia and multiple origins of Tibetan and Japanese populations
-
Shi H, Zhong H, Peng Y, Dong YL, Qi XB, Zhang F, Liu LF, Tan SJ, Ma RZ, Xiao CJ, et al. 2008. Y chromosome evidence of earliest modern human settlement in East Asia and multiple origins of Tibetan and Japanese populations. BMC Biol 6: 45.
-
(2008)
BMC Biol
, vol.6
, pp. 45
-
-
Shi, H.1
Zhong, H.2
Peng, Y.3
Dong, Y.L.4
Qi, X.B.5
Zhang, F.6
Liu, L.F.7
Tan, S.J.8
Ma, R.Z.9
Xiao, C.J.10
-
65
-
-
84906054037
-
Genome-wide genotype and sequence-based reconstruction of the 140, 000 year history of modern human ancestry
-
Shriner D, Tekola-Ayele F, Adeyemo A, Rotimi CN. 2014. Genome-wide genotype and sequence-based reconstruction of the 140, 000 year history of modern human ancestry. Sci Rep 4: 6055.
-
(2014)
Sci Rep
, vol.4
, pp. 6055
-
-
Shriner, D.1
Tekola-Ayele, F.2
Adeyemo, A.3
Rotimi, C.N.4
-
66
-
-
0037967242
-
The male-specific region of the human y chromosome is a mosaic of discrete sequence classes
-
Skaletsky H, Kuroda-Kawaguchi T, Minx PJ, Cordum HS, Hillier L, Brown LG, Repping S, Pyntikova T, Ali J, Bieri T, et al. 2003. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature 423: 825-837.
-
(2003)
Nature
, vol.423
, pp. 825-837
-
-
Skaletsky, H.1
Kuroda-Kawaguchi, T.2
Minx, P.J.3
Cordum, H.S.4
Hillier, L.5
Brown, L.G.6
Repping, S.7
Pyntikova, T.8
Ali, J.9
Bieri, T.10
-
67
-
-
75149150388
-
TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses
-
Stöver BC, Müller KF. 2010. TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses. BMC Bioinformatics 11: 7.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 7
-
-
Stöver, B.C.1
Müller, K.F.2
-
68
-
-
77954202497
-
DendroPy: A Python library for phylogenet-ic computing
-
Sukumaran J, Holder MT. 2010. DendroPy: a Python library for phylogenet-ic computing. Bioinformatics 26: 1569-1571.
-
(2010)
Bioinformatics
, vol.26
, pp. 1569-1571
-
-
Sukumaran, J.1
Holder, M.T.2
-
69
-
-
0028205953
-
Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site
-
Tateno Y, Takezaki N, Nei M. 1994. Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site. Mol Biol Evol 11: 261-277.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 261-277
-
-
Tateno, Y.1
Takezaki, N.2
Nei, M.3
-
70
-
-
64049089255
-
Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation
-
van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat 30: E386-E394.
-
(2009)
Hum Mutat
, vol.30
, pp. E386-E394
-
-
Van Oven, M.1
Kayser, M.2
|