The effect of phylogenetically different bacteria on the fitness of pseudomonas fluorescens in sand microcosms

PLoS ONE

Volumn 10, Issue 3, 2015, Pages

  Tyc, Olaf ^a   Wolf, Alexandra B ^a,b   Garbeva, Paolina ^a  

^a NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

^b IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACILLUS; BACTERIAL GROWTH; COLONY FORMING UNIT; CONTROLLED STUDY; GENE EXPRESSION REGULATION; INTERSPECIFIC RELATIONSHIP; MOLECULAR PHYLOGENY; NONHUMAN; PEDOBACTER; PSEUDOMONAS FLUORESCENS; REPRODUCTIVE FITNESS; SAND; UPREGULATION; MICROBIAL CONSORTIUM; MICROBIOLOGY; PHYSIOLOGY;

BACILLUS SP.; BACTERIA (MICROORGANISMS); NEGIBACTERIA; PEDOBACTER; POSIBACTERIA; PSEUDOMONAS FLUORESCENS;

BACILLUS; MICROBIAL CONSORTIA; PEDOBACTER; PSEUDOMONAS FLUORESCENS; SOIL MICROBIOLOGY;

EID: 84956660638     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0119335     Document Type: Article

References (26)

1. Uroz S, Buee M, Murat C, Frey-Klett P, Martin F (2010) Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil. Environmental Microbiology Reports 2: 281-288. doi: 10.1111/j.1758-2229.2009.00117.x PMID: 23766079
2. Gans J, Wolinsky M, Dunbar J (2005) Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science 309: 1387-1390. PMID: 16123304
3. Cornforth DM, Foster KR (2013) Competition sensing: The social side of bacterial stress responses. Nature Reviews Microbiology 11: 285-293. doi: 10.1038/nrmicro2977 PMID: 23456045
4. Mitri S, Foster KR (2013) The genotypic view of social interactions in microbial communities. Annual Review of Genetics 47: 247-273. doi: 10.1146/annurev-genet-111212-133307 PMID: 24016192
5. Foster Kevin R, Bell T (2012) Competition, not cooperation, dominates interactions among culturable microbial species. Current biology 22: 1845-1850. doi: 10.1016/j.cub.2012.08.005 PMID: 22959348
6. Hibbing ME, Fuqua C, Parsek MR, Peterson SB (2010) Bacterial competition: surviving and thriving in the microbial jungle. Nature Reviews Microbiology 8: 15-25. doi: 10.1038/nrmicro2259 PMID: 19946288
7. D'Onofrio A, Crawford JM, Stewart EJ, Witt K, Gavrish E, Epstein S, et al. (2010) Siderophores from neighboring organisms promote the growth of uncultured bacteria. Chemistry & Biology 17: 254-264
8. Czaran T, Hoekstra RF (2009) Microbial communication, cooperation and cheating: quorum sensing drives the evolution of cooperation in bacteria. Plos One 4: e6655. doi: 10.1371/journal.pone.0006655 PMID: 19684853
9. Allen B, Nowak MA (2013) Cooperation and the fate of microbial societies. PLoS Biol 11: e1001549. doi: 10.1371/journal.pbio.1001549 PMID: 23637573
10. Traxler MF, Watrous JD, Alexandrov T, Dorrestein PC, Kolter R (2013) Interspecies Interactions Stimulate Diversification of the Streptomyces coelicolor Secreted Metabolome. Mbio 4
11. de Boer W, Wagenaar A-M, Gunnewiek PJAK, van Veen JA (2007) In vitro suppression of fungi caused by combinations of apparently non-antagonistic soil bacteria. Fems Microbiology Ecology 59: 177-185. PMID: 17233750
12. Garbeva P, Silby MW, Raaijmakers JM, Levy SB, de BoerW(2011) Transcriptional and antagonistic responses of Pseudomonas fluorescens Pf0-1 to phylogenetically different bacterial competitors. ISME Journal 5: 973-985. doi: 10.1038/ismej.2010.196 PMID: 21228890
13. Garbeva P, de BoerW(2009) Inter-specific Interactions Between Carbon-limited Soil Bacteria Affect Behavior and Gene Expression. Microbial Ecology 58: 36-46. doi: 10.1007/s00248-009-9502-3 PMID: 19267150
14. Torsvik V, Goksoyr J, Daae FL (1990) High diversity in DNA of soil bacteria. Appl Environ Microbiol 56: 782-787. PMID: 2317046
15. Demoling F, Figueroa D, Baath E (2007) Comparison of factors limiting bacterial growth in different soils. Soil Biology & Biochemistry 39: 2485-2495
16. Compeau G, Alachi BJ, Platsouka E, Levy SB (1988) Survival of rifampin-resistant mutants of Pseudomonas fluorescens and Pseudomonas putida in soil systems. Applied and Environmental Microbiology 54: 2432-2438. PMID: 3144244
17. van den Berg HA, Orlov MV, Kiselëv YN (2008) The Malthusian parameter in microbial ecology and evolution: An optimal control treatment. Computational Mathematics and Modeling 19: 406-428
18. Vasi F, Travisano M, Lenski RE (1994) Long-Term Experimental Evolution in Escherichia coli. II. Changes in Life-History Traits During Adaptation to a Seasonal Environment. The American Naturalist 144: 432-456
19. Garbeva P, Tyc O, Remus-Emsermann MNP, van der Wal A, Vos M, Silby M, et al. (2011) No Apparent Costs for Facultative Antibiotic Production by the Soil Bacterium Pseudomonas fluorescens Pf0-1. Plos One 6
20. Tyc O, van den Berg M, Gerards S, van Veen JA, Raaijmakers JM, de Boer W, et al. (2014) Impact of interspecific interactions on antimicrobial activity among soil bacteria. Frontiers in Microbiology 5: 567. doi: 10.3389/fmicb.2014.00567 PMID: 25389421
21. Jousset A, Schmid B, Scheu S, Eisenhauer N (2011) Genotypic richness and dissimilarity opposingly affect ecosystem functioning. Ecology Letters 14: 537-545. doi: 10.1111/j.1461-0248.2011.01613.x PMID: 21435139
22. Becker J, Eisenhauer N, Scheu S, Jousset A (2012) Increasing antagonistic interactions cause bacterial communities to collapse at high diversity. Ecology Letters 15: 468-474. doi: 10.1111/j.1461-0248. 2012.01759.x PMID: 22394557
23. Inglis RF, Brown SP, Buckling A (2012) Spite Versus Cheats: Competition among Social Strategies Shapes Virulence in Pseudomonas Aeruginosa. Evolution 66: 3472-3484. doi: 10.1111/j.1558-5646. 2012.01706.x PMID: 23106711
24. Sanchez S, Chavez A, Forero A, Garcia-Huante Y, Romero A, Sanchez M, et al. (2010) Carbon source regulation of antibiotic production. Journal of Antibiotics 63: 442-459. doi: 10.1038/ja.2010.78 PMID: 20664603
25. van Wezel GP, McDowall KJ (2011) The regulation of the secondary metabolism of Streptomyces: New links and experimental advances. Natural Product Reports 28: 1311-1333. doi: 10.1039/c1np00003a PMID: 21611665
26. Garbeva P, Hordijk C, Gerards S, de BoerW(2014) Volatiles produced by the mycophagous soil bacterium Collimonas. Fems Microbiology Ecology 87: 639-649. doi: 10.1111/1574-6941.12252 PMID: 24329759