Micromonospora fluostatini sp. nov isolated from marine sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 65, Issue 12, 2015, Pages 4417-4423

  Phongsopitanun, Wongsakorn ^a   Kudo, Takuji ^b   Mori, Mihoko ^c   Shiomi, Kazuro ^c   Pittayakhajonwut, Pattama ^d   Suwanborirux, Khanit ^a   Tanasupawat, Somboon ^a  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b RIKEN BIORESOURCE CENTER   (Japan)

^c KITASATO UNIVERSITY   (Japan)

^d NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DIAMINOPIMELIC ACID; FARNOQUINONE; FATTY ACID; PEPTIDOGLYCAN; PHOSPHOLIPID; RNA 16S; SEA WATER;

BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MICROMONOSPORA; MOLECULAR GENETICS; PHYLOGENY; PIGMENTATION; SEDIMENT; THAILAND;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DIAMINOPIMELIC ACID; DNA, BACTERIAL; FATTY ACIDS; GEOLOGIC SEDIMENTS; MICROMONOSPORA; MOLECULAR SEQUENCE DATA; PEPTIDOGLYCAN; PHOSPHOLIPIDS; PHYLOGENY; PIGMENTATION; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; THAILAND; VITAMIN K 2;

EID: 84955514273     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijsem.0.000589     Document Type: Article

References (44)

1. Akiyama, T Harada, S Kojima, F Takahashi, Y Imada, C Okami, Y Muraoka, Y Aoyagi, T. &Takeuchi, T. (1998). Fluostatins A and B,new inhibitors of dipeptidyl peptidase III, produced by Streptomycessp. TA-3391 I. Taxonomy of producing strain, production,isolation, physico-chemical properties and biological properties. J Antibiot (Tokyo) 51, 553–559.
2. Arai, T. (1975). Culture Media for Actinomycetes. Tokyo: The Societyfor Actinomycetes.
3. Baur, S Niehaus, J Karagouni, A. D Katsifas, E. A Chalkou, K Meintanis, C Jones, A. L Goodfellow, M Ward, A. C. &otherauthors (2006). Fluostatins C-E, novel members of the fluostatinfamily produced by Streptomyces strain Acta 1383. J Antibiot(Tokyo) 59, 293–297.
4. Bérdy, J. (2005). Bioactive microbial metabolites. J Antibiot (Tokyo) 58, 1–26.
5. Collins, M. D Pirouz, T Goodfellow, M. &Minnikin, D. E. (1977).Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221–230.
6. Ezaki, T Hashimoto, Y. &Yabuuchi, E. (1989). Fluorometricdeoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilutionwells as an alternative to membrane filter hybridization inwhich radioisotopes are used to determine genetic relatedness amongbacterial strains. Int J Syst Bacteriol 39, 224–229.
7. Felsenstein, J. (1981). Evolutionary trees from DNA sequences:a maximum likelihood approach. J Mol Evol 17, 368–376.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approachusing the bootstrap. Evolution 39, 783–791.
9. Fitch, W. M. (1971). Toward defining the course of evolution:minimum change for specific tree topology. Syst Zool 20, 406–416.
10. Garcia, L. C Martínez-Molina, E. &Trujillo, M. E. (2010). Micromonospora pisi sp. nov isolated from root nodules of Pisumsativum. Int J Syst Evol Microbiol 60, 331–337.
11. Genilloud, O. (2012). Genus I Micromonospora Ørskov 1923, 156AL. In Bergey’s Manual of Systematic Bacteriology, vol. 5, 2nd edn pp. 1039–1057. Edited by M. Goodfellow, P. Kӧmpfer, H. Busse,M. E. Trujillo, K. Suzuki, W. Ludwig &W. B. Whitman. New York: Springer.
12. Gordon, R. E Barnett, D. A Handerhan, J. E. &Pang, C. H. N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. IntJ Syst Bacteriol 24, 54–63.
13. Hall, T. A. (1999). BioEdit: a user-friendly biological sequencealignment editor and analysis program for Windows 95/98 NT. Nucleic Acids Symp Ser 41, 95–98.
14. Horan, A. C. &Brodsky, B. C. (1986). Micromonospora rosaria sp. novnom. rev the rosaramicin producer. Int J Syst Bacteriol 36, 478–480.
15. Jongrungruangchok, S Tanasupawat, S. &Kudo, T. (2008).Micromonospora chaiyaphumensis sp. nov isolated from Thai soils. Int J Syst Evol Microbiol 58, 924–928.
16. Kelly, K. L. (1964). Inter-Society Color Council – National Bureau ofStandards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
17. Kim, O. S Cho, Y. J Lee, K Yoon, S. H Kim, M Na, H Park, S. C Jeon, Y. S Lee, J. H. &other authors (2012). Introducing EzTaxon-e:a prokaryotic 16S rRNA gene sequence database with phylotypes thatrepresent uncultured species. Int J Syst Evol Microbiol 62, 716–721.
18. Kroppenstedt, R. M Mayilraj, S Wink, J. M Kallow, W Schumann, P Secondini, C. &Stackebrandt, E. (2005). Eight new species of the genusMicromonospora, Micromonospora citrea sp. nov Micromonosporaechinaurantiaca sp. nov Micromonospora echinofusca sp. novMicromonospora fulviridis sp. nov Micromonospora iyonensis sp. novMicromonospora peucetia sp. nov Micromonospora sagamiensis sp. novand Micromonospora viridifaciens sp. nov. Syst Appl Microbiol 28, 328–339.
19. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic AcidTechniques in Bacterial Systematics, pp. 115–148. Edited by E. Stackebrandt &M. Goodfellow. Chichester: Wiley.
20. Lechevalier, M. P. &Lechevalier, H. A. (1970). Chemical compositionas a criterion in the classification of aerobic actinomycetes. Int J SystBacteriol 20, 435–443.
21. Minnikin, D. E O’Donnell, A. G Goodfellow, M Alderson, G Athalye, M Schaal, A. &Parlett, J. H. (1984). An integratedprocedure for the extraction of bacterial isoprenoid uinones andpolar lipids. J Microbiol Methods 2, 233–241.
22. Ørskov, J. (1923). Investigations into the Morphology of the Ray Fungi. Copenhagen: Levin and Munksgaard.
23. Raeder, U. &Broda, P. (1985). Rapid preparation of DNA fromfilamentous fungi. Lett Appl Microbiol 1, 17–20.
24. Saitou, N. &Nei, M. (1987). The neighbor-joining method: a newmethod for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425.
25. Sasser, M. (1990). Identification of bacteria by gas chromatography ofcellular fatty acids. MIDI Technical Note 101 Newark, DE: MIDI Inc.
26. Shirling, E. B. &Gottlieb, D. (1966). Methods for characterization ofStreptomyces species. Int J Syst Bacteriol 16, 313–340.
27. Stackebrandt, E. &Ebers, J. (2006). Taxonomic parameters revisited:tarnished gold standards. Microbiol Today 33, 152–155.
28. Staneck, J. L. &Roberts, G. D. (1974). Simplified approach toidentification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226–231.
29. Supong, K Suriyachadkun, C Pittayakhajonwut, P Suwanborirux, K. &Thawai, C. (2013). Micromonospora spongicola sp. nov anactinomycete isolated from a marine sponge in the Gulf ofThailand. J Antibiot (Tokyo) 66, 505–509.
30. Suriyachadkun, C Chunhametha, S Thawai, C Tamura, T Potacharoen, W Kirtikara, K. &Sanglier, J. J. (2009).Planotetraspora thailandica sp. nov isolated from soil in Thailand. Int J Syst Evol Microbiol 59, 992–997.
31. Tamaoka, J. &Komagata, K. (1984). Determination of DNAbase composition by reversed-phase high-performance liquidchromatography. FEMS Microbiol Lett 25, 125–128.
32. Tamura, K Stecher, G Peterson, D Filipski, A. &Kumar, S. (2013).MEGA6: molecular evolutionary genetics analysis version 6.0. Mol BiolEvol 30, 2725–2729.
33. Tanasupawat, S Jongrungruangchok, S. &Kudo, T. (2010).Micromonospora marina sp. nov isolated from sea sand. Int J SystEvol Microbiol 60, 648–652.
34. Thawai, C Tanasupawat, S Itoh, T Suwanborirux, K. &Kudo, T.(2004). Micromonospora aurantionigra sp. nov isolated from a peatswamp forest in Thailand. Actinomycetologica 18, 8–14.
35. Thawai, C Tanasupawat, S Itoh, T Suwanborirux, K Suzuki, K. &Kudo, T. (2005). Micromonospora eburnea sp. nov isolated from aThai peat swamp forest. Int J Syst Evol Microbiol 55, 417–422.
36. Tomiyasu, I. (1982). Mycolic acid composition and thermallyadaptative changes in Nocardia asteroides. J Bacteriol 151, 828–837.
37. Trujillo, M. E Kroppenstedt, R. M Schumann, P Carro, L. &Martínez-Molina, E. (2006). Micromonospora coriariae sp. novisolated from root nodules of Coriaria myrtifolia. Int J Syst EvolMicrobiol 56, 2381–2385.
38. Uchida, K. &Aida, K. (1984). An improved method for the glycolatetest for simple identification of the acyl type of bacterial cell walls. J Gen Appl Microbiol 37, 463–464.
39. Wagman, G. H. &Weinstein, M. J. (1980). Antibiotic fromMicromonospora. Annu Rev Microbiol 34, 537–558.
40. Wayne, L. G Brenner, D. J Colwell, R. R Grimont, P. A. D Kandler, O Krichevsky, M. I Moore, L. H Moore, W. E. C Murray, R. G. E. &other authors (1987). International Committee on SystematicBacteriology. Report of the ad hoc committee on the reconciliationof approaches to bacterial systematic. Int J Syst Bacteriol 37, 463–464.
41. Williams, S. T Cross, T. &Chapter, X. I. (1971). Actinomycetes. Methods Microbiol 4, 295–334.
42. Zhang, H Lee, Y. K Zhang, W. &Lee, H. K. (2006). Culturableactinobacteria from the marine sponge Hymeniacidon perleve:isolation and phylogenetic diversity by 16S rRNA gene-RFLPanalysis. Antonie van Leeuwenhoek 90, 159–169.
43. Zhang, L Xi, L Ruan, J. &Huang, Y. (2012a). Micromonosporayangpuensis sp. nov isolated from a sponge. Int J Syst EvolMicrobiol 62, 272–278.
44. Zhang, W Liu, Z Li, S Lu, Y Chen, Y Zhang, H Zhang, G Zhu, Y Zhang, G. &other authors (2012b). Fluostatins I-K from the SouthChina Sea-derived Micromonospora rosaria SCSIO N160. J Nat Prod 75, 1937–1943.