Core clock, SUB1, and ABAR genes mediate flooding and drought responses via alternative splicing in soybean

Journal of Experimental Botany

Volumn 66, Issue 22, 2015, Pages 7129-7149

  Syed, Naeem H ^a   Prince, Silvas J ^b   Mutava, Raymond N ^b   Patil, Gunvant ^b   Li, Song ^b   Chen, Wei ^b,c   Babu, Valliyodan ^b   Joshi, Trupti ^a   Khan, Saad ^b   Nguyen, Henry T ^b  

^a CANTERBURY CHRIST CHURCH UNIVERSITY   (United Kingdom)

^b UNIVERSITY OF MISSOURI   (United States)

^c Beijing Tongzhou International Seed Science and Technology Co Ltd   (China)

Author keywords

ABA; ABAR; alternative splicing; circadian clock; drought; flooding; jasmonic acid; SUB1

Indexed keywords

ABSCISIC ACID; CYCLOPENTANE DERIVATIVE; JASMONIC ACID; OXYLIPIN; PLANT PROTEIN; TRANSCRIPTION FACTOR;

ALTERNATIVE RNA SPLICING; AMINO ACID SEQUENCE; BIOLOGICAL RHYTHM; DROUGHT; FLOODING; GENETICS; METABOLISM; MOLECULAR GENETICS; PLANT GENE; SEQUENCE ALIGNMENT; SOYBEAN;

ABSCISIC ACID; ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; BIOLOGICAL CLOCKS; CYCLOPENTANES; DROUGHTS; FLOODS; GENES, PLANT; MOLECULAR SEQUENCE DATA; OXYLIPINS; PLANT PROTEINS; SEQUENCE ALIGNMENT; SOYBEANS; TRANSCRIPTION FACTORS;

EID: 84955477830     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erv407     Document Type: Article

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28. Bailey-Serres J, Voesenek LACJ. 2008. Flooding stress: acclimations and genetic diversity. Annual Review of Plant Biology 59, 313-339.
29. Battaglia M, Covarrubias AA. 2013. Late embryogenesis abundant (LEA) proteins in legumes. Frontiers in Plant Science 4, 190.
30. Bendix C, Marshall CM, Harmon FG. 2015. Circadian clock genes universally control key agricultural traits. Molecular Plant 8, 1135-1152.
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32. Covington MF, Harmer SL.2007. The circadian clock regulates auxin signaling and responses in Arabidopsis. PLoS Biology 5, 1773-1784.
33. Covington MF, Maloof JN, Straume M, Kay SA, Harmer SL.2008. Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biology 9, R130.
34. Dalal M, Tayal D, Chinnusamy V, Bansal KC. 2009. Abiotic stress and ABA-inducible Group 4 LEA from Brassica napus plays a key role in salt and drought tolerance. Journal of Biotechnology 139, 137-145.
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36. De Ollas C, Hernando B, Arbona V, Gómez-Cadenas A. 2013. Jasmonic acid transient accumulation is needed for abscisic acid increase in citrus roots under drought stress conditions. Physiologia Plantarum 147, 296-306.
37. Dereeper A, Guignon V, Blanc G, et aL.2008. Phylogeny. fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Research 36, W465-W469.
38. Deshmukh R, Sonah H, Patil G, Chen W, Prince S, Mutava R, Vuong T, Valliyodan B, Nguyen HT. 2014. Integrating omic approaches for abiotic stress tolerance in soybean. Frontiers in Plant Science 5, 244.
39. Dodd AN, Salathia N, Hall A, Kévei E, Tóth R, Nagy F, Hibberd JM, Millar AJ, Webb AAR. 2005. Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science 309, 630-633.
40. Fukao T, Bailey-Serres J. 2008. Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proceedings of the National Academy of Sciences, USA 105, 16814-16819.
41. Fukao T, Xiong L.2013. Genetic mechanisms conferring adaptation to submergence and drought in rice: simple or complex? Current Opinion in Plant Biology 16, 196-204.
42. Fukao T, Yeung E, Bailey-Serres J. 2011. The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice. The Plant Cell 23, 412-427.
43. Gendron JM, Pruneda-Paz JL, Doherty CJ, Gross AM, Kang SE, Kay SA. 2012. Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor. Proceedings of the National Academy of Sciences, USA 109, 3167-3172.
44. Goyal K, Walton LJ, Tunnacliffe A. 2005. LEA proteins prevent protein aggregation due to water stress. Biochemical Journal 388, 151-157.
45. Graf A, Schlereth A, Stitt M, Smith AM. 2010. Circadian control of carbohydrate availability for growth in Arabidopsis plants at night. Proceedings of the National Academy of Sciences, USA 107, 9458-9463.
46. Graf A, Smith AM. 2011. Starch and the clock: the dark side of plant productivity. Trends in Plant Science 16, 169-175.
47. Green RM, Tingay S, Wang Z-Y, Tobin EM. 2002. Circadian rhythms confer a higher level of fitness to Arabidopsis plants. Plant Physiology 129, 576-584.
48. Green RM, Tobin EM. 1999. Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression. Proceedings of the National Academy of Sciences, USA 96, 4176-4179.
49. Harmer SL.2009. The circadian system in higher plants. Annual Review of Plant Biology 60, 357-377.
50. Hattori Y, Nagai K, Furukawa S, et aL.2009. The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature 460, 1026-1030.