Improving cold storage and processing traits in potato through targeted gene knockout

Plant Biotechnology Journal

Volumn 14, Issue 1, 2016, Pages 169-176

  Clasen, Benjamin M ^a   Stoddard, Thomas J ^a   Luo, Song ^a   Demorest, Zachary L ^a   Li, Jin ^a   Cedrone, Frederic ^a   Tibebu, Redeat ^a   Davison, Shawn ^a   Ray, Erin E ^a   Daulhac, Aurelie ^a   Coffman, Andrew ^a   Yabandith, Ann ^a   Retterath, Adam ^a   Haun, William ^a   Baltes, Nicholas J ^a   Mathis, Luc ^a   Voytas, Daniel F ^a   Zhang, Feng ^a  

^a Arvid Wallgrens Backe 20   (France)

Author keywords

Acrylamide reduction; Cold induced sweetening; Gene editing; Potato; Transcription activator like effector nucleases; Vacuolar invertase

Indexed keywords

ACRYLAMIDE; BETA FRUCTOFURANOSIDASE; CARBOHYDRATE; TRANSCRIPTION ACTIVATOR LIKE EFFECTOR NUCLEASE;

CELL VACUOLE; COLD; CRYOPRESERVATION; ENZYMOLOGY; GENE INACTIVATION; GENE TARGETING; GENETICS; METABOLISM; MUTATION; NUCLEOTIDE SEQUENCE; PLANT GENE; POTATO; PROCEDURES; TRANSGENIC PLANT;

ACRYLAMIDE; BASE SEQUENCE; BETA-FRUCTOFURANOSIDASE; CARBOHYDRATES; COLD TEMPERATURE; CRYOPRESERVATION; GENE KNOCKOUT TECHNIQUES; GENE TARGETING; GENES, PLANT; MUTATION; PLANTS, GENETICALLY MODIFIED; SOLANUM TUBEROSUM; TRANSCRIPTION ACTIVATOR-LIKE EFFECTOR NUCLEASES; VACUOLES;

EID: 84955199237     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1111/pbi.12370     Document Type: Article

References (39)

1. Aljanabi, S.M. and Martinez, I. (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res. 25, 4692-4693.
2. Barrell, P.J. and Conner, A.J. (2009) Expression of a chimeric magainin gene in potato confers improved resistance to the phytopathogen Erwinia carotovora. Open Plant Sci. J. 3, 14-21.
3. Barrell, P.J., Meiyalaghan, S., Jacobs, J.M. and Conner, A.J. (2013) Applications of biotechnology and genomics in potato improvement. Plant Biotechnol. J. 11, 907-920.
4. Beurdeley, M., Bietz, F., Li, J., Thomas, S., Stoddard, T., Juillerat, A., Zhang, F., Voytas, D.F., Duchateau, P. and Silva, G.H. (2013) Compact designer TALENs for efficient genome engineering. Nat. Commun. 4, 1762.
5. Bhaskar, P.B., Wu, L., Busse, J.S., Whitty, B.R., Hamernik, A.J., Jansky, S.H., Buell, C.R., Bethke, P.C. and Jiang, J. (2010) Suppression of the vacuolar invertase gene prevents cold-induced sweetening in potato. Plant Physiol. 154, 939-948.
6. Bianchi, G., Scalzo, R.L., Testoni, A. and Maestrelli, A. (2014) Nondestructive analysis to monitor potato quality during cold storage. J. Food Qual. 37, 9-17.
7. Bradshaw, J.E., Bryan, G.J. and Ramsay, G. (2006) Genetic resources (including wild and cultivated Solanum species) and progress in their utilisation in potato breeding. Potato Res. 49, 49-65.
8. Cermak, T., Doyle, E.L., Christian, M., Wang, L., Zhang, Y., Schmidt, C., Baller, J.A., Somia, N.V., Bogdanove, A.J. and Voytas, D.F. (2011) Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res. 39, e82.
9. Craig, W., Gargano, D., Scotti, N., Nguyen, T., Lao, N., Kavanagh, T., Dix, P. and Cardi, T. (2005) Direct gene transfer in potato: a comparison of particle bombardment of leaf explants and PEG-mediated transformation of protoplasts. Plant Cell Rep. 24, 603-611.
10. Dale, M.F. and Bradshaw, J.E. (2003) Progress in improving processing attributes in potato. Trends Plant Sci. 8, 310-312.
11. Draffehn, A., Meller, S., Li, L. and Gebhardt, C. (2010) Natural diversity of potato (Solanum tuberosum) invertases. BMC Plant Biol. 10, 271.
12. Elias, R., Till, B., Mba, C. and Al-Safadi, B. (2009) Optimizing TILLING and Ecotilling techniques for potato (Solanum tuberosum L). BMC Res. Notes, 2, 141.
13. Fernandez-Cornejo, J., Wechsler, S., Livingston, M. and Mitchell, L. (2014) Genetically Engineered Crops in the United States. Washington D.C: US Department of Agriculture Economic Research Service.
14. Frock, R.L., Hu, J., Meyers, R.M., Ho, Y.J., Kii, E. and Alt, F.W. (2015) Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases. Nat. Biotechnol. 33, 179-186.
15. Gamborg, O.L. and Shyluk, J.P. (1981) Nutrition, Media and Characteristics of Plant Cell and Tissue Cultures. In: Plant Tissue Culture (Thorpe, T.A. ed) pp. 21-44. San Diego, CA: Academic Press.
16. Grob, K. (2007) Options for legal measures to reduce acrylamide contents in the most relevant foods. Food Addit. Contam. 24, 71-81.
17. Haberlach, G., Cohen, B., Reichert, N., Baer, M., Towill, L. and Helgeson, J.P. (1985) Isolation, culture and regeneration of protoplasts from potato and several related Solanum species. Plant Sci. 39, 67-74.
18. Haun, W., Coffman, A., Clasen, B.M., Demorest, Z.L., Lowy, A., Ray, E., Retterath, A., Stoddard, T., Juillerat, A., Cedrone, F., Mathis, L., Voytas, D.F. and Zhang, F. (2014) Improved soybean oil quality by targeted mutagenesis of the fatty acid desaturase 2 gene family. Plant Biotechnol. J. 12, 934-940.
19. Holme, I.B., Wendt, T. and Holm, P.B. (2013) Intragenesis and cisgenesis as alternatives to transgenic crop development. Plant Biotechnol. J. 11, 395-407.
20. Jacobs, J.M., Takla, M.F., Docherty, L.C., Frater, C.M., Markwick, N.P., Meiyalaghan, S. and Conner, A.J. (2009) Potato transformation with modified nucleotide sequences of the cry9Aa2 gene improves resistance to potato tuber moth. Potato Res. 52, 367-378.
21. Juillerat, A., Dubois, G., Valton, J., Thomas, S., Stella, S., Marechal, A., Langevin, S., Benomari, N., Bertonati, C., Silva, G.H., Daboussi, F., Epinat, J.C., Montoya, G., Duclert, A. and Duchateau, P. (2014) Comprehensive analysis of the specificity of transcription activator-like effector nucleases. Nucleic Acids Res. 42, 5390-5402.
22. Kumar, D., Singh, B.P. and Kumar, P. (2004) An overview of the factors affecting sugar content of potatoes. Ann. Appl. Biol. 145, 247-256.
23. Kuzma, J. and Kokotovich, A. (2011) Renegotiating GM crop regulation. Targeted gene-modification technology raises new issues for the oversight of genetically modified crops. EMBO reports 12, 883-888.
24. Mali, P., Aach, J., Stranges, P.B., Esvelt, K.M., Moosburner, M., Kosuri, S., Yang, L. and Church, G.M. (2013) CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat. Biotechnol. 31, 833-838.
25. Matsuura-Endo, C., Ohara-Takada, A., Chuda, Y., Ono, H., Yada, H., Yoshida, M., Kobayashi, A., Tsuda, S., Takigawa, S., Noda, T., Yamauchi, H. and Mori, M. (2006) Effects of storage temperature on the contents of sugars and free amino acids in tubers from different potato cultivars and acrylamide in chips. Biosci. Biotechnol. Biochem. 70, 1173-1180.
26. Medeiros Vinci, R., Mestdagh, F. and De Meulenaer, B. (2012) Acrylamide formation in fried potato products - present and future, a critical review on mitigation strategies. Food Chem. 133, 1138-1154.
27. Mottram, D.S., Wedzicha, B.L. and Dodson, A.T. (2002) Acrylamide is formed in the Maillard reaction. Nature, 419, 448-449.
28. Muth, J., Hartje, S., Twyman, R.M., Hofferbert, H.R., Tacke, E. and Prüfer, D. (2008) Precision breeding for novel starch variants in potato. Plant Biotechnol. J. 6, 576-584.
29. Roitsch, T. and Gonzalez, M.C. (2004) Function and regulation of plant invertases: sweet sensations. Trends Plant Sci. 9, 606-613.
30. Rommens, C.M. (2007) Intragenic crop improvement: combining the benefits of traditional breeding and genetic engineering. J. Agric. Food Chem. 55, 4281-4288.
31. Slugina, M.A., Khrapalova, I.A., Ryzhova, N.N., Kochieva, E.Z. and Skryabin, K.G. (2014) Polymorphism of Pain-1 invertase gene in Solanum species. Dokl. Biochem. Biophys. 454, 1-3.
32. Sowokinos, J. (2001) Biochemical and molecular control of cold-induced sweetening in potatoes. Am. J. Potato Res. 78, 221-236.
33. Stadler, R.H., Blank, I., Varga, N., Robert, F., Hau, J., Guy, P.A., Robert, M.C. and Riediker, S. (2002) Acrylamide from Maillard reaction products. Nature, 419, 449-450.
34. Tareke, E., Rydberg, P., Karlsson, P., Eriksson, S. and Tornqvist, M. (2002) Analysis of acrylamide, a carcinogen formed in heated foodstuffs. J. Agric. Food Chem. 50, 4998-5006.
35. Voytas, D.F. (2013) Plant genome engineering with sequence-specific nucleases. Annu. Rev. Plant Biol. 64, 327-350.
36. Wu, L., Bhaskar, P.B., Busse, J.S., Zhang, R., Bethke, P.C. and Jiang, J. (2011) Developing Cold-Chipping Potato Varieties by Silencing the Vacuolar Invertase Gene All rights reserved. No part of this periodical may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or any information storage and retrieval system, without permission in writing from the publisher. Permission for printing and for reprinting the material contained herein has been obtained by the publisher. Crop Sci. 51, 981-990.
37. Ye, J., Shakya, R., Shrestha, P. and Rommens, C.M. (2010) Tuber-specific silencing of the acid invertase gene substantially lowers the acrylamide-forming potential of potato. J. Agric. Food Chem. 58, 12162-12167.
38. Yoo, S.D., Cho, Y.H. and Sheen, J. (2007) Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat. Protoc. 2, 1565-1572.
39. Zhang, Y., Zhang, F., Li, X., Baller, J.A., Qi, Y., Starker, C.G., Bogdanove, A.J. and Voytas, D.F. (2013) Transcription activator-like effector nucleases enable efficient plant genome engineering. Plant Physiol. 161, 20-27.