Climate-induced die-offaffects plant-soil-microbe ecological relationship and functioning

FEMS Microbiology Ecology

Volumn 91, Issue 2, 2015, Pages

  Lloret, Francisco ^a,b   Mattana, Stefania ^a   Yuste, Jorge Curiel ^a,c  

^a CREAF   (Spain)

^b UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^c MUSEO NACIONAL DE CIENCIAS NATURALES   (Spain)

Author keywords

Climate change; Drought episode; Extreme climatic event; Microbial diversity; Microbial soil respiration; Soil microbial community

Indexed keywords

BACTERIUM; CLIMATE CHANGE; CONIFEROUS FOREST; DROUGHT; EXTREME EVENT; FUNGUS; HABITAT TYPE; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; MOLECULAR ANALYSIS; SOIL MICROORGANISM; SOIL RESPIRATION; SOIL-VEGETATION INTERACTION; SPECIES DIVERSITY; SPECIES RICHNESS; WOODLAND;

MEDITERRANEAN REGION;

BACTERIA (MICROORGANISMS); JUNIPERUS;

SOIL;

BACTERIUM; BIODIVERSITY; BIOMASS; CLIMATE; DROUGHT; FOREST; FUNGUS; GROWTH, DEVELOPMENT AND AGING; MICROBIAL CONSORTIUM; MICROBIOLOGY; PLANT; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SOIL;

BACTERIA; BIODIVERSITY; BIOMASS; CLIMATE; DROUGHTS; FORESTS; FUNGI; MICROBIAL CONSORTIA; PLANTS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SOIL; SOIL MICROBIOLOGY;

EID: 84954471100     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1093/femsec/fiu014     Document Type: Article

References (50)

1. Abdo Z, Schuette UME, Bent SJ, et al. Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes. Environ Microbiol 2006;8:929-38.
2. Allen CD, Macalady AK, Chenchouni H, et al. A global overview of drought and heat-induced mortality reveals emerging climate change risks for forests. Forest Ecol Manag 2010;259: 660-84.
3. Anderson JPE. Soil respiration. In: Page AL (ed). Methods of Soil Analysis. Part 2. Chemical and Microbiological Properties, 2nd edn. Agron. Monogr. 9. Madison, WI: ASA and SSSA, 1982, 831-71.
4. Bais HP, Weir TL, Perry LG, et al. The role of root exudates in rhizosphere interactions with plants and other organisms. Annu Rev Plant Biol 2006;57:234-66.
5. Balser TC, Firestone MK. Linkingmicrobial community composition and soil processes in a California annual grassland and mixed-conifer forest. Biogeochemistry 2005;73:395-415.
6. 2 effluxes of a mixed Mediterranean forest. Forest Ecol Manag 2013;306:79-87.
7. Bardgett RD, Freeman C, Ostle NJ. Microbial contributions to climate change through carbon cycle feedbacks. ISME J 2008;2:805-14.
8. Barnard RL, Osborne CA, Firestone MK. Responses of soil bacterial and fungal communities to extreme dessication and rewetting. ISME J 2013;7:2229-41.
9. Berard A, Bouchet T, Sevenier G, et al. Resilience of soilmicrobial communities impacted by severe drought and high temperature in the context of Mediterranean heat waves. Eur J Soil Biol 2011;47:333-42.
10. Cregger M, Schadt CW, McDowell NG, et al. Response of the soil microbial community to changes in precipitation in a semiarid ecosystem. Appl Environ Microb 2012;78:8587-94.
11. Cruz-Martinez K, Suttle KB, Brodie EL, et al. Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J 2009;3:738-44.
12. Culman S, Bukowski R, Gauch H, et al. T-REX: software for the processing and analysis of T-RFLP data BMC. Bioinformatics 2009;10:171.
13. Curiel Yuste J, Barba J, Fernandez-Gonzalez AJ, et al. Changes in metagenomical soil bacterial community: diversity, composition and function triggered by drought-induced gap succession preceded changes in soil C stocks and quality. Evol Ecol 2012;2:3016-31.
14. Curiel Yuste J, Fernandez-Gonzalez AJ, Fernandez-Lopez M, et al. Strong functional stability of soil microbial communities under semiarid Mediterranean conditions and subjected to long-term shifts in baseline precipitation. Soil Biol Biochem 2014;69:223-33.
15. Curiel Yuste J, Misson L, Wong S, et al. Response of soil microbial decomposition to environmental changes at two contrasting Mediterranean ecosystems. Glob Change Biol 2007;13:2018-35.
16. Curiel Yuste J, Peñuelas J, Estiarte M, et al. Drought-resistant fungi control soil organic matter decomposition and its response to temperature. Glob Change Biol 2011;17: 1475-86.
17. Del Cacho M, Lloret F. Resilience of Mediterranean shrubland to severe drought episode: the role of seed bank and seedling establishment. Plant Biol 2012;14:458-66.
18. Deslippe JR, Hartmann M, Simard SW, et al. Long-term warming alters the composition of Arctic soil microbial communities. FEMS Microbiol Ecol 2012;82:302-15.
19. Eskelinen A, Stark S, Mannisto M. Links between plant community composition, soil organic matter quality and microbial communities in contrasting tundra habitats. Oecologia 2009;161:113-23.
20. Fierer N, StricklandMS, Liptzin D, et al. Global patterns in belowground communities. Ecol Lett 2009;12:1238-49.
21. García Novo F. The ecology of vegetation of the dunes in Doñana National Park (South-West Spain). In: Jefferies RL, Davy AJ (eds). Ecological Processes in Coastal Environments. London: Blackwell, 1979, 571-92.
22. Högberg P, Löfvenius MO, Nordgren A. Partitioning of soil respiration into its autotrophic and heterotrophic components by means of tree-girdling in old boreal spruce forest. Forest Ecol Manag 2009;257:1764-7.
23. Imberger KT, Chiu CY. Spatial changes of soil fungal and bacterial biomass from a sub-alpine coniferous forest to grassland in a humid, sub-tropical region. Biol Fert Soils 2001;33:105-10.
24. IPCC. Climate Change 2013: The Physical Scientific Basis. WMO, UNEP, 2013.
25. Kageyama SA, PosavatzNR, Waterstripe KE, et al. Fungal and bacterial communities across meadow-forest ecotones in the western Cascades of Oregon. Can J Forest Res 2008;38:1053-60.
26. Kennedy N, Edwards S, Clipson N. Soil bacterial and fungal community structure across a range of unimproved and semiimproved upland grasslands. Microb Ecol 2005;50:463-73.
27. Lauber CL, Hamady M, Knight R, et al. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microb 2009;75:5111-20.
28. Leps J, Smilauer P. Multivariate Analysis of Ecologica Data Using CANOCO. Cambridge: Cambridge Univ. Press, 2003.
29. Lloret F, Escudero A, Iriondo JM, et al. Extreme climatic events and vegetation: the role of stabilizing processes. Glob Change Biol 2012;18:797-805.
30. Lloret F, Siscart D, Dalmases C. Canopy recovery after drought dieback in holm-oak Mediterranean forests of Catalonia (NE Spain). Glob Change Biol 2004;10:2092-9.
31. Magurran AE. Measuring Biological Diversity. Malden, MA: Blackwell, 2004.
32. Meisner A, De Deyn GB, de BoerW, et al. Soil biotic legacy effects of extreme weather events influence plant invasiveness. P Natl Acad Sci USA 2013;110:9835-8.
33. Mitchell RJ, Hester AJ, Campbell CD, et al. Explaining the variation in the soil microbial community: do vegetation composition and soil chemistry explain the same or different parts of the microbial variation? Plant Soil 2012;351: 355-62.
34. Montane F, Romanya J, Rovira P, et al. Aboveground litter quality changes may drive soil organic carbon increase after shrub encroachment into mountain grasslands. Plant Soil 2010;337:151-65.
35. Muñoz-Reinoso JC, García Novo F. Multiscale control of vegetation patterns: the case of Doñana (SW Spain). Landscape Ecol 2004;20:51-61.
36. Nelson DW, Sommers LE. Total carbon, organic carbon and organic matter. In: Page AL (ed). Methods of Soil Analysis. Part 2. Chemical and Microbiological Properties, 2nd edn. Agron. Monogr. 9. Madison, WI: ASA and SSSA, 1982, 539-79.
37. Sagova-Mareckova M, Omelka M, Cermak L, et al. Microbial communities show parallels at sites with distinct litter and soil characteristics. Appl Environ Microb 2011;77:7560-7.
38. Sambrook J, Fritsch EF, Maniatis T. Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, 1989.
39. Sheik CS, Beasley WH, Elshahed MS, et al. Effect of warming and drought on grassland microbial communities. ISME J 2011;5:1692-700.
40. Siljeström P, Clement L. Geomorphology and soil evolution of a moving dune system in SW Spain (Doñana National Park). J Arid Environ 1990;18:139-371.
41. Siljeström PA, Moreno A, García LV, et al. Doñana National Park (southwest Spain): geomorphological characterization through a soil-vegetation study. J Arid Environ 1994;26:315-23.
42. Storey S, Ashaari MM, McCabe G, et al. Microbial community structure during fluoranthene degradation in the presence of plants. J Appl Microbiol 2014;117:74-84.
43. UshioM, Wagai R, Balser TC, et al. Variations in the soilmicrobial community composition of a tropicalmontane forest ecosystem, does tree species matter? Soil Biol Biochem 2008;40:2699-702.
44. Van Mantgem PJ, Stephenson NL, Byrne JC, et al. Widespread increase of tree mortality rates in the Western United States. Science 2009;323:521-4.
45. Vance ED, Brookes PC, Jenkinson DS. An extraction method for measuring soil microbial biomass-C. Soil Biol Biochem 1987;19:703-7.
46. Waldrop MP, Firestone MK. Response of microbial community composition and function to soil climate change. Microb Ecol 2006;52:716-24.
47. Waldrop MP, Zak DR, Blackwood C, et al. Resource availability controls fungal diversity across a plant diversity gradient. Ecol Lett 2006;9:1127-35.
48. Williams RJ, Hallgren SW, Wilson GWT, et al. Juniperus virginiana encroachment into upland oak forests alters arbuscularmycorrhizal abundance and litter chemistry. Appl Soil Ecol 2013;65:23-30.
49. Zak DR, Holmes WE, White DC, et al. Plant diversity, soil microbial communities, and ecosystem function: Are there any links? Ecology 2003;84:2042-50.
50. Zhang K, Cheng X, Dang H, et al. Linking litter production, quality and decomposition to vegetation succession following agricultural abandonment. Soil Biol Biochem 2013;57: 803-13.