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Volumn 9, Issue 3, 2015, Pages 763-774

Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

Author keywords

Burkholderia; Mimosa; Nitrogen fixation; Rhizobia; Symbiosis

Indexed keywords

DNA 16S;

EID: 84954089759     PISSN: None     EISSN: 19443277     Source Type: Journal    
DOI: 10.4056/sigs.4861021     Document Type: Article
Times cited : (44)

References (41)
  • 1
    • 0035927646 scopus 로고    scopus 로고
    • Munive a, Dreyfus B, Boivin-Masson C. Nodulation of legumes by members of the beta-subclass of Proteobacteria
    • PubMed
    • Moulin L. Munive a, Dreyfus B, Boivin-Masson C. Nodulation of legumes by members of the beta-subclass of Proteobacteria. Nature 2001; 411:948-950. PubMed http://dx.doi.org/10.1038/35082070
    • (2001) Nature , vol.411 , pp. 948-950
    • Moulin, L.1
  • 2
    • 0034801924 scopus 로고    scopus 로고
    • Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient
    • PubMed
    • Chen WM, Laevens S, Lee TM, Coenye T, De Vos P, Mergeay M, Vandamme P. Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int J Syst Evol Microbiol 2001; 51:1729-1735. PubMed http://dx.doi.org/10.1099/00207713-51-5-1729
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 1729-1735
    • Chen, W.M.1    Laevens, S.2    Lee, T.M.3    Coenye, T.4    De Vos, P.5    Mergeay, M.6    Vandamme, P.7
  • 8
    • 0036959851 scopus 로고    scopus 로고
    • Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov., nodulate the roots of tropical legumes
    • PubMed
    • Vandamme P, Goris J, Chen WM, De Vos P, Willems A. Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov., nodulate the roots of tropical legumes. Syst Appl Microbiol 2002; 25:507-512. PubMed http://dx.doi.org/10.1078/07232020260517634
    • (2002) Syst Appl Microbiol , vol.25 , pp. 507-512
    • Vandamme, P.1    Goris, J.2    Chen, W.M.3    De Vos, P.4    Willems, A.5
  • 9
    • 33845530709 scopus 로고    scopus 로고
    • Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta
    • PubMed
    • Elliott GN, Chen WM, Chou JH, Wang HC, Sheu SY, Perin L, Reis VM, Moulin L, Simon MF, Bontemps C, et al. Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta. New Phytol 2007; 173:168-180. PubMed http://dx.doi.org/10.1111/j.1469-8137.2006.01894.x
    • (2007) New Phytol , vol.173 , pp. 168-180
    • Elliott, G.N.1    Chen, W.M.2    Chou, J.H.3    Wang, H.C.4    Sheu, S.Y.5    Perin, L.6    Reis, V.M.7    Moulin, L.8    Simon, M.F.9    Bontemps, C.10
  • 10
    • 84855284151 scopus 로고    scopus 로고
    • Genetic diversity of Mimosa pudica rhizobial symbionts in soils of French Guiana: Investigating the origin and diver-sity of Burkholderia phymatum and other beta-rhizobia
    • PubMed
    • Mishra RP, Tisseyre P, Melkonian R, Chaintreuil C, Miché L, Klonowska A, Gonzalez S, Bena G, Laguerre G, Moulin L, et al. Genetic diversity of Mimosa pudica rhizobial symbionts in soils of French Guiana: Investigating the origin and diver-sity of Burkholderia phymatum and other beta-rhizobia. FEMS Microbiol Ecol 2012; 79:487-503. PubMed http://dx.doi.org/10.1111/j.1574-6941.2011.01235.x
    • (2012) FEMS Microbiol Ecol , vol.79 , pp. 487-503
    • Mishra, R.P.1    Tisseyre, P.2    Melkonian, R.3    Chaintreuil, C.4    Miché, L.5    Klonowska, A.6    Gonzalez, S.7    Bena, G.8    Laguerre, G.9    Moulin, L.10
  • 11
    • 84862789602 scopus 로고    scopus 로고
    • Burkholderia and Cupriavidus spp. are the preferred symbionts of Mimosa spp. in southern China
    • PubMed
    • Liu X, Wei S, Wang F, James EK, Guo X, Zagar C, Xia LG, Dong X, Wang YP. Burkholderia and Cupriavidus spp. are the preferred symbionts of Mimosa spp. in southern China. FEMS Microbiol Ecol 2012; 80:417-426. PubMed http://dx.doi.org/10.1111/j.1574-6941.2012.01310.x
    • (2012) FEMS Microbiol Ecol , vol.80 , pp. 417-426
    • Liu, X.1    Wei, S.2    Wang, F.3    James, E.K.4    Guo, X.5    Zagar, C.6    Xia, L.G.7    Dong, X.8    Wang, Y.P.9
  • 16
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: proposal for the do-mains Archaea, Bacteria, and Eucarya
    • PubMed
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the do-mains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579. PubMed http://dx.doi.org/10.1073/pnas.87.12.4576
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 17
    • 84988888640 scopus 로고    scopus 로고
    • Phylum XIV. Proteobacteria phyl. nov
    • Garrity GM, Brenner DJ, Krieg NR, Staley JT, Second Edition, Volume 2, Part B, Springer, New York
    • Garrity GM, Bell JA, Lilburn T. Phylum XIV. Proteobacteria phyl. nov. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 2, Part B, Springer, New York, 2005, p. 1.
    • (2005) Bergey's Manual of Systematic Bacteriology , pp. 1
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 18
    • 33746265973 scopus 로고    scopus 로고
    • Validation List No. 107. List of new names and new combinations previously effectively, but not validly, published
    • PubMed
    • Validation List No. 107. List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 2006; 56:1-6. PubMed http://dx.doi.org/10.1099/ijs.0.64188-0
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1-6
  • 19
    • 33646193540 scopus 로고    scopus 로고
    • Class II. Betaproteobacteria class. nov
    • Garrity GM, Brenner DJ, Krieg NR, Staley JT, Second Edition, Volume 2, Part C, Springer, New York
    • Garrity GM, Bell JA, Lilburn T. Class II. Betaproteobacteria class. nov. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds), Bergey's Manual of Systematic Bacteriology, Second Edi-tion, Volume 2, Part C, Springer, New York, 2005, p. 575.
    • (2005) Bergey's Manual of Systematic Bacteriology , pp. 575
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 20
    • 33747880275 scopus 로고    scopus 로고
    • Order I. Burkholderiales ord. nov
    • Garrity GM, Brenner DJ, Krieg NR, Staley JT, Second Edition, Volume 2, Part C, Springer, New York
    • Garrity GM, Bell JA, Lilburn T. Order I. Burkholderiales ord. nov. In: Garrity GM, Brenner DJ, Krieg NR, Staley JT (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 2, Part C, Springer, New York, 2005, p. 575.
    • (2005) Bergey's Manual of Systematic Bacteriology , pp. 575
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 21
    • 33747880275 scopus 로고    scopus 로고
    • Family I. Burkholderiaceae fam. nov
    • Garrity GM, Brenner DJ, Krieg NR, Staley JT, Second Edition, Vol-ume 2, Part C, Springer, New York
    • Garrity GM, Bell JA, Lilburn T. Family I. Burkholderiaceae fam. nov. In: Garrity GM, Bren-ner DJ, Krieg NR, Staley JT (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Vol-ume 2, Part C, Springer, New York, 2005, p. 575.
    • (2005) Bergey's Manual of Systematic Bacteriology , pp. 575
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 22
    • 0027523364 scopus 로고
    • Validation of the publication of new names and new combinations previously effectively pub-lished outside the IJSB. List No. 45
    • Validation of the publication of new names and new combinations previously effectively pub-lished outside the IJSB. List No. 45. Int J Syst Bacteriol 1993; 43:398-399. http://dx.doi.org/10.1099/00207713-43-2-398
    • (1993) Int J Syst Bacteriol , vol.43 , pp. 398-399
  • 23
    • 0027096070 scopus 로고
    • Proposal of Burkholderia ge. nov. and transfer of sev-en species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov
    • PubMed
    • Yabuuchi E, Kosako Y, Oyaizu H, Yano I, Hotta H, Hashimoto Y, Ezaki T, Arakawa M. Proposal of Burkholderia gen. nov. and transfer of sev-en species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol Immunol 1992; 36:1251-1275. PubMed http://dx.doi.org/10.1111/j.1348-0421.1992.tb02129.x
    • (1992) Microbiol Immunol , vol.36 , pp. 1251-1275
    • Yabuuchi, E.1    Kosako, Y.2    Oyaizu, H.3    Yano, I.4    Hotta, H.5    Hashimoto, Y.6    Ezaki, T.7    Arakawa, M.8
  • 24
    • 0028902895 scopus 로고
    • Polyphasic taxonomy in the genus Burkholderia leading to an emended description of the genus and proposition of Burkholderia vietnamiensis sp. nov. for N2-fixing isolates from rice in Vietnam
    • Gillis M, Van TV, Bardin R, Goor M, Hebbar P, Willems A, Segers P, Kersters K, Heulin T, Fernandez MP. Polyphasic taxonomy in the genus Burkholderia leading to an emended description of the genus and proposition of Burkholderia vietnamiensis sp. nov. for N2-fixing isolates from rice in Vietnam. Int J Syst Bacteriol 1995; 45:274-289. http://dx.doi.org/10.1099/00207713-45-2-274
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 274-289
    • Gillis, M.1    Van, T.V.2    Bardin, R.3    Goor, M.4    Hebbar, P.5    Willems, A.6    Segers, P.7    Kersters, K.8    Heulin, T.9    Fernandez, M.P.10
  • 25
    • 0038316351 scopus 로고    scopus 로고
    • Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Validation List No. 91
    • PubMed
    • Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Validation List No. 91. Int J Syst Evol Microbiol 2003; 53:627-628. PubMed http://dx.doi.org/10.1099/ijs.0.02771-0
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 627-628
  • 27
    • 35848944452 scopus 로고    scopus 로고
    • Phylogenetic Study of the Genus Piptadenia (Mimosoideae: Leguminosae) using Plastid trnL-F and trnK / matK Sequence Da-ta
    • Jobson RW, Luckow M. Phylogenetic Study of the Genus Piptadenia (Mimosoideae: Leguminosae) using Plastid trnL-F and trnK / matK Sequence Da-ta. Syst Bot 2007; 32:569-575. http://dx.doi.org/10.1600/036364407782250544
    • (2007) Syst Bot , vol.32 , pp. 569-575
    • Jobson, R.W.1    Luckow, M.2
  • 28
    • 71049180352 scopus 로고    scopus 로고
    • Gene context anal-ysis in the Integrated Microbial Genomes (IMG) data management system
    • PubMed
    • Mavromatis K, Chu K, Ivanova N, Hooper SD, Markowitz VM, Kyrpides NC. Gene context anal-ysis in the Integrated Microbial Genomes (IMG) data management system. PLoS ONE 2009; 4:e7979. PubMed http://dx.doi.org/10.1371/journal.pone.0007979
    • (2009) PLoS ONE , vol.4
    • Mavromatis, K.1    Chu, K.2    Ivanova, N.3    Hooper, S.D.4    Markowitz, V.M.5    Kyrpides, N.C.6
  • 31
    • 84988833699 scopus 로고    scopus 로고
    • DOE Joint Genome Institute user home. http://my.jgi.doe.gov/general/index.html
  • 32
    • 84988816006 scopus 로고    scopus 로고
    • DOE Joint Genome Institute. http://www.jgi.doe.gov
  • 33
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated se-quencer traces using phred. II. Error probabilities
    • PubMed
    • Ewing B, Green P. Base-calling of automated se-quencer traces using phred. II. Error probabilities. Genome Res 1998; 8:186-194. PubMed http://dx.doi.org/10.1101/gr.8.3.175
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 34
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • PubMed
    • Ewing B, Hillier L, Wendl MC, Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 1998; 8:175-185. PubMed http://dx.doi.org/10.1101/gr.8.3.175
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 35
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graph-ical tool for sequence finishing
    • PubMed
    • Gordon D, Abajian C, Green P. Consed: a graph-ical tool for sequence finishing. Genome Res 1998; 8:195-202. PubMed http://dx.doi.org/10.1101/gr.8.3.195
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 36
    • 84988901183 scopus 로고    scopus 로고
    • Integrated Microbial Genomes (IMG) platform. http://img.jgi.doe.gov
  • 39
    • 79955013072 scopus 로고    scopus 로고
    • Ultra-fast sequence clustering from similarity networks with SiLiX
    • PubMed
    • Miele V, Penel S, Duret L. Ultra-fast sequence clustering from similarity networks with SiLiX. BMC Bioinformatics 2011; 12:116. PubMed http://dx.doi.org/10.1186/1471-2105-12-116
    • (2011) BMC Bioinformatics , vol.12 , pp. 116
    • Miele, V.1    Penel, S.2    Duret, L.3
  • 40
    • 84988832308 scopus 로고    scopus 로고
    • SiLiX. http://lbbe.univ-lyon1.fr/-SiLiX-.html.
  • 41
    • 84903759029 scopus 로고    scopus 로고
    • The geographical patterns of symbiont diversity in the invasive leg-ume Mimosa pudica can be explained by the competitiveness of its symbionts and by the host genotype
    • PubMed
    • Melkonian R, Moulin L, Béna G, Tisseyre P, Chaintreuil C, Heulin K, Rezkallah N, Klonowska A, Gonzalez S, Simon M, et al. The geographical patterns of symbiont diversity in the invasive leg-ume Mimosa pudica can be explained by the competitiveness of its symbionts and by the host genotype. Environ Microbiol 2013. PubMed http://dx.doi.org/10.1111/1462-2920.12286
    • Environ Microbiol 2013
    • Melkonian, R.1    Moulin, L.2    Béna, G.3    Tisseyre, P.4    Chaintreuil, C.5    Heulin, K.6    Rezkallah, N.7    Klonowska, A.8    Gonzalez, S.9    Simon, M.10


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