A single-nucleotide polymorphism of TaGS5 gene revealed its association with kernel weight in Chinese bread wheat

Frontiers in Plant Science

Volumn 6, Issue DEC, 2015, Pages

  Wang, Shasha ^a   Zhang, Xiangfen ^a   Chen, Feng ^a   Cui, Dangqun ^a  

^a HENAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Bread wheat; Kernel size; RT PCR; TaGS5 gene; Yield related traits

Indexed keywords

EID: 84954059745     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2015.01166     Document Type: Article

References (49)

1. Chen, F., Gao, M. X., Zhang, J. H., Zuo, A. H., Shang, X. L., and Cui, D. Q. (2013a). Molecular characterization of vernalization and response genes in bread wheat from the Yellow and Huai Valley of China. BMC Plant Biol. 13:199. doi: 10.1186/1471-2229-13-199
2. Chen, F., Li, H., and Cui, D. Q. (2013b). Discovery, distribution and diversity of Puroindoline-D1 genes in bread wheat from five countries (Triticum aestivum L.). BMC Plant Biol. 13:125. doi: 10.1186/1471-2229-13-125
3. Chen, F., Xu, H. X., Zhang, F. Y., Xia, X. C., He, Z. H., Wang, D. W., et al. (2010). Physical mapping of puroindoline b-2 genes and molecular characterization of a novel variant in durum wheat (Triticum turgidum L.). Mol. Breed. 28, 153–161. doi: 10.1007/s11032-010-9469-2
4. Chen, L., Hao, L., Parry, M. A. J., Phillips, A. L., and Hu, Y. G. (2014). Progress in TILLING as a tool for functional genomics and improvement of crops. J. Integr. Plant Biol. 56, 425–443. doi: 10.1111/jipb.12192
5. Cui, F., Zhao, C., Ding, A., Li, J., Wang, L., Li, X., et al. (2014). Construction of an integrative linkage map and QTL mapping of grain yield-related traits using three related wheat RIL populations. Theor. Appl. Genet. 127, 659–675. doi: 10.1007/s00122-013-2249-8
6. Dabhi, B., and Mistry, K. N. (2014). In silico analysis of single nucleotide polymorphism (SNP) in human TNF-alpha gene. Meta Gene. 2, 586–595. doi: 10.1016/j.mgene.2014.07.005
7. Fan, C., Xing, Y., Mao, H., Lu, T., Han, B., Xu, C., et al. (2006). GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor. Appl. Genet. 112, 1164–1171. doi: 10.1007/s00122-006-0218-1
8. Guo, L., Ma, L., Jiang, H., Zeng, D., Hu, J., Wu, L., et al. (2009). Genetic analysis and fine mapping of two genes for grain shape and weight in rice. J. Integr. Plant Biol. 51, 45–51. doi: 10.1111/j.1744-7909.2008.00793.x
9. Hong, Y., Chen, L., Du, L. P., Su, Z., Wang, J., Ye, X., et al. (2014). Transcript suppression of TaGW2 increased grain width and weight in bread wheat. Funct. Integr. Genomics 14, 341–349. doi: 10.1007/s10142-014-0380-5
10. Jiang, Q., Hou, J., Hao, C., Wang, L., Ge, H., Dong, Y., et al. (2011). The wheat (T. aestivum) sucrose synthase 2 gene (TaSus2) active in endosperm development is associated with yield traits. Funct. Integr. Genomics 11, 49–61. doi: 10.1007/s10142-010-0188-x
11. Jiao, Y., Wang, Y., Xue, D., Wang, J., Yan, M., Liu, G., et al. (2010). Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat. Genet. 42, 541–544. doi: 10.1038/ng.591
12. Kurowska, M., Daszkowska-Golec, A., Gruszka, D., Marzec, M., Szurman, M., Szarejko, I., et al. (2011). TILLING - a shortcut in functional genomics. J. Appl. Genet. 52, 371–390. doi: 10.1007/s13353-011-0061-1
13. Li, J., Thomson, M., and McCouch, S. R. (2004a). Fine mapping of a grain-weight quantitative trait locus in the pericentromeric region of rice chromosome 3. Genetics 168, 2187–2195. doi: 10.1534/genetics.104.034165
14. Li, J., Xiao, J., Grandillo, S., Jiang, L., Wan, Y., Deng, Q., et al. (2004b). QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice. Genome 47, 697–704. doi: 10.1139/g04-029
15. Li, Q., Li, L., Yang, X., Warburton, M. L., Bai, G., Dai, J., et al. (2010). Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight. BMC Plant Biol. 10:143. doi: 10.1186/1471-2229-10-143
16. Li, Y., Fan, C., Xing, Y., Jiang, Y., Luo, L., Sun, L., et al. (2011). Natural variation in GS5 plays an important role in regulating grain size and yield in rice. Nat. Genet. 43, 1266–1269. doi: 10.1038/ng.977
17. Liu, G., Jia, L. J., Lu, L. H., Qin, D. D., Zhang, J. P., Guan, P. F., et al. (2014). Mapping QTLs of yield-related traits using RIL population derived from common wheat and Tibetan semi-wild wheat. Theor. Appl. Genet. 127, 2415–2432. doi: 10.1007/s00122-014-2387-7
18. Liu, J., Deng, M., Guo, H., Raihan, S., Luo, J., Xu, Y., et al. (2015). Maize orthologs of rice GS5 and their trans-regulator are associated with kernel development. J. Integr. Plant Biol. 57, 943–953. doi: 10.1111/jipb.12421
19. Lowe, L., Jankuloski, L., Chao, S., Chen, X., See, D., and Dubcovsky, J. (2011). Mapping and validation of QTL which confer partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat. Theor. Appl. Genet. 123, 143–157. doi: 10.1007/s00122-011-1573-0
20. Ma, D., Yan, J., He, Z., Wu, L., and Xia, X. (2010). Characterization of a cell wall invertase gene TaCwi-A1 on common wheat chromosome 2A and development of functional markers. Mol. Breed. 29, 43–52. doi: 10.1007/s11032-010-9524-z
21. McIntosh, R. A., Devos, K. M., Dubcovsky, J., Rogers, W. J., Morris, C. F., Appels, R., et al. (2007). Catalogue of gene symbols for wheat: 2007 supplement. Available online at: http://wheat.pw.usda.gov/ggpages/wgc/2007upd.html
22. Meng, L., Li, H., Zhang, L., and Wang, J. (2015). QTL IciMapping: integrated software for genetic linkage map construction and quantitative trait locus mapping in bi-parental populations. Crop J. 3, 265–279. doi: 10.1016/j.cj.2015.01.001
23. Peng, J., Richards, D. E., Hartley, N. M., Murphy, G. P., Devos, K. M., Flintham, J. E., et al. (1999). 'Green revolution' genes encode mutant gibberellin response modulators. Nature 400, 256–261. doi: 10.1038/22307
24. Qin, L., Hao, C. Y., Hou, J., Wang, Y. Q., Li, T., Wang, L. F., et al. (2014). Homologous haplotypes, expression, genetic effects and geographic distribution of the wheat yield gene TaGW2. BMC Plant Biol. 14:107. doi: 10.1186/1471-2229-14-107
25. Quarrie, S. A., Pekic Quarrie, S., Radosevic, R., Rancic, D., Kaminska, A., Barnes, J. D., et al. (2006). Dissecting a wheat QTL for yield present in a range of environments: from the QTL to candidate genes. J. Exp. Bot. 57, 2627–2637. doi: 10.1093/jxb/erl026
26. Rawat, N., Sehgal, S. K., Joshi, A., Rothe, N., Wilson, D. L., McGraw, N., et al. (2012). A diploid wheat TILLING resource for wheat functional genomics. BMC Plant Biol. 12:205. doi: 10.1186/1471-2229-12-205
27. SAS Institute Inc. (2000). SAS Procedures Guide, Version 8. Cary, NC: SAS Institute Inc.
28. Sharp, P., and Dong, C. (2014). TILLING for plant breeding. Methods Mol. Biol. 1145, 155–165. doi: 10.1007/978-1-4939-0446-4_13
29. Simmonds, J., Scott, P., Leverington-Waite, M., Turner, A. S., Brinton, J., Korzun, V., et al. (2014). Identification and independent validation of a stable yield and thousand grain weight QTL on chromosome 6A of hexaploid wheat (Triticum aestivum L.). BMC Plant Biol. 14:191. doi: 10.1186/s12870-014-0191-9
30. Slade, A. J., Fuerstenberg, S. I., Loeffler, D., Steine, M. N., and Facciotti, D. (2005). A reverse genetic, nontransgenic approach to wheat crop improvement by TILLING. Nat. Biotechnol. 23, 75–81. doi: 10.1038/nbt1043
31. Song, X. J., Huang, W., Shi, M., Zhu, M. Z., and Lin, H. X. (2007). A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nat. Genet. 39, 623–630. doi: 10.1038/ng2014
32. Su, Z., Hao, C., Wang, L., Dong, Y., and Zhang, X. (2010). Identification and development of a functional marker of TaGW2 associated with grain weight in bread wheat (Triticum aestivum L.). Theor. Appl. Genet. 122, 211–223. doi: 10.1007/s00122-010-1437-z
33. Takano-Kai, N., Jiang, H., Kubo, T., Sweeney, M., Matsumoto, T., Kanamori, H., et al. (2009). Evolutionary history of GS3, a gene conferring grain length in rice. Genetics 182, 1323–1334. doi: 10.1534/genetics.109.103002
34. Takano-Kai, N., Jiang, H., Powell, A., McCouch, S., Takamure, I., Furuya, N., et al. (2013). Multiple and independent origins of short seeded alleles of GS3 in rice. Breed. Sci. 63, 77–85. doi: 10.1270/jsbbs.63.77
35. Uauy, C., Paraiso, F., Colasuonno, P., Tran, R. K., Tsai, H., Berardi, S., et al. (2009). A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biol. 9:115. doi: 10.1186/1471-2229-9-115
36. Varshney, R. K., Hoisington, D. A., and Tyagi, A. K. (2006). Advances in cereal genomics and applications in crop breeding. Trends Biotechnol. 24, 490–499. doi: 10.1016/j.tibtech.2006.08.006
37. Varshney, R. K., Prasad, M., Roy, J. K., Kumar Harjit-Singh, N., Dhaliwal, H. S., Balyan, H. S., et al. (2000). Identification of eight chromosomes and a microsatellite marker on 1AS associated with QTL for grain weight in bread wheat. Theor. Appl. Genet. 100, 1290–1294. doi: 10.1007/s001220051437
38. Wang, E., Wang, J., Zhu, X., Hao, W., Wang, L., Li, Q., et al. (2008). Control of rice grain-filling and yield by a gene with a potential signature of domestication. Nat. Genet. 40, 1370–1374. doi: 10.1038/ng.220
39. Wang, L., Ge, H., Hao, C., Dong, Y., and Zhang, X. (2012a). Identifying loci influencing 1000-kernel weight in wheat by microsatellite screening for evidence of selection during breeding. PLoS ONE 7:e29432. doi: 10.1371/journal.pone.0029432
40. Wang, R. X., Hai, L., Zhang, X. Y., You, G. X., Yan, C. S., and Xiao, S. H. (2009). QTL mapping for grain filling rate and yield-related traits in RILs of the Chinese winter wheat population Heshangmai × Yu8679. Theor. Appl. Genet. 118, 313–325 doi: 10.1007/s00122-008-0901-5
41. Wang, S., Wu, K., Yuan, Q., Liu, X., Liu, Z., Lin, X., et al. (2012b). Control of grain size, shape and quality by OsSPL16 in rice. Nat. Genet. 44, 950–954. doi: 10.1038/ng.2327
42. Weng, J., Gu, S., Wan, X., Gao, H., Guo, T., Su, N., et al. (2008). Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight. Cell Res. 18, 1199–1209. doi: 10.1038/cr.2008.307
43. Wu, X. S., Chang, X. P., and Jing, R. L. (2012). Genetic insight into yield-associated traits of wheat grown in multiple rain-fed environments. PLoS ONE 7:e31249. doi: 10.1371/journal.pone.0031249
44. Xie, X., Song, M. H., Jin, F., Ahn, S. N., Suh, J. P., Hwang, H. G., et al. (2006). Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon. Theor. Appl. Genet. 113, 885–894. doi: 10.1007/s00122-006-0348-5
45. Xue, W., Xing, Y., Weng, X., Zhao, Y., Tang, W., Wang, L., et al. (2008). Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat. Genet. 40, 761–767. doi: 10.1038/ng.143
46. Zhang, J., Liu, W., Yang, X., Gao, A., Li, X., Wu, X., et al. (2011). Isolation and characterization of two putative cytokinin oxidase genes related to grain number per spike phenotype in wheat. Mol. Biol. Rep. 38, 2337–2347. doi: 10.1007/s11033-010-0367-9
47. Zhang, L., Zhao, Y. L., Gao, L. F., Zhao, G. Y., Zhou, R. H., Zhang, B. S., et al. (2012). TaCKX6-D1, the ortholog of rice OsCKX2, is associated with grain weight in hexaploid wheat. New Phytol. 195, 574–584. doi: 10.1111/j.1469-8137.2012.04194.x
48. Zhang, L. Y., Liu, D. C., Guo, X. L., Yang, W. L., Sun, J. Z., Wang, D. W., et al. (2010). Genomic distribution of quantitative trait loci for yield and yield-related traits in common wheat. J. Integr. Plant Biol. 52, 996–1007. doi: 10.1111/j.1744-7909.2010.00967.x
49. Zhou, Y., He, Z., Sui, X., Xia, X., Zhang, X., and Zhang, G. (2007). Genetic improvement of grain yield and associated traits in the northern China winter wheat region from 1960 to 2000. Crop Sci. 47, 245–253. doi: 10.2135/cropsci2006.03.0175