Characterization of SCL33 splicing patterns during diverse virus infections in brachypodium distachyon

Plant Signaling and Behavior

Volumn 10, Issue 8, 2015, Pages

  Mandadi, Kranthi K ^a,b   Pyle, Jesse D ^a   Scholthof, Karen Beth G ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Alternative Splicing; Brachypodium; Plant Virus; RNA seq; Spliceosome

Indexed keywords

TRANSCRIPTOME;

ALTERNATIVE RNA SPLICING; BRACHYPODIUM; DISEASE RESISTANCE; GENE EXPRESSION REGULATION; GENETICS; PLANT DISEASE; PLANT GENE; PLANT VIRUS; SATELLITE VIRUS; SEQUENCE ANALYSIS; SPLICEOSOME; VIROLOGY;

ALTERNATIVE SPLICING; BRACHYPODIUM; DISEASE RESISTANCE; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; PLANT DISEASES; PLANT VIRUSES; SATELLITE VIRUSES; SEQUENCE ANALYSIS, RNA; SPLICEOSOMES; TRANSCRIPTOME;

EID: 84953792042     PISSN: 15592316     EISSN: 15592324     Source Type: Journal    
DOI: 10.1080/15592324.2015.1042641     Document Type: Article

References (12)

1. Duque P. A role for SR proteins in plant stress responses. Plant Signal Behav 2011; 6:49-54
2. Reddy ASN, Marquez Y, Kalyna M, Barta A. Complexity of the alternative splicing landscape in plants. Plant Cell 2013; 25:3657-83;PMID:24179125; http://dx.doi.org/10.1105/tpc.113.117523
3. Staiger D, Brown JWS. Alternative splicing at the intersection of biological timing, development, and stress responses. Plant Cell 2013; 25:3640-56;PMID:24179132; http://dx.doi.org/10.1105/tpc.113.113803
4. Nilsen TW, Graveley BR. Expansion of the eukaryotic proteome by alternative splicing. Nature 2010;463:457-63;PMID:20110989; http://dx.doi.org/10.1038/nature08909
5. Brkljacic J, Grotewold E, Scholl R, Mockler T, Garvin DF, Vain P, Brutnell T, Sibout R, Bevan M, Budak H, et al. Brachypodium as a model for the grasses: today and the future. Plant Physiol 2011; 157:3-13;PMID:21771916; http://dx.doi.org/10.1104/pp.111.179531
6. Mandadi KK, Scholthof K-BG. Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon. Plant Cell 2015; 27:71-85;PMID:25634987; http://dx.doi.org/10.1105/tpc.114.133991
7. Will CL, L€uhrmann R. Spliceosome structure and function. Cold Spring Harb Perspect Biol 2011; 3;pii:a003707; PMID:21441581
8. Thomas J, Palusa SG, Prasad KVSK, Ali GS, Surabhi G-K, Ben-Hur A, Abdel-Ghany SE, Reddy AS. Identification of an intronic splicing regulatory element involved in auto-regulation of alternative splicing of SCL33 pre-mRNA. Plant J 2012; 72:935-46;PMID:22913769
9. Thomas J. Functional analysis of three Arabidopsis SR proteins (SCL33, SC35, SCL30A) in plant development and splicing. PhD dissertation (Fort Collins: Colorado State University, 2012)
10. Mandadi KK, Pyle JD, Scholthof K-BG. Comparative analysis of antiviral responses in Brachypodium distachyon and Setaria viridis reveals conserved and unique outcomes among C3 and C4 plant defenses. Mol Plant Microbe Interact 2014; 27:1277-90
11. Mandadi KK, Scholthof K-BG. Characterization of a viral synergism in the monocot Brachypodium distachyon reveals distinctly altered host molecular processes associated with disease. Plant Physiol 2012; 160:1432-52
12. Mandadi KK, Scholthof K-BG. Plant immune responses against viruses: how does a virus cause disease? Plant Cell 2013; 25:1489-505