-
1
-
-
77955172885
-
Genome-wide chromatin maps derived from limited numbers of hematopoietic progenitors
-
Adli M., Zhu J., Bernstein B.E. Genome-wide chromatin maps derived from limited numbers of hematopoietic progenitors. Nat. Methods 2010, 7:615-618.
-
(2010)
Nat. Methods
, vol.7
, pp. 615-618
-
-
Adli, M.1
Zhu, J.2
Bernstein, B.E.3
-
2
-
-
84878362044
-
Somatic mutations of the CREBBP and EP300 genes affect response to histone deacetylase inhibition in malignant DLBCL clones
-
Andersen C.L., Asmar F., Klausen T., Hasselbalch H., Grønbæk K. Somatic mutations of the CREBBP and EP300 genes affect response to histone deacetylase inhibition in malignant DLBCL clones. Leuk. Res. Rep. 2012, 2:1-3.
-
(2012)
Leuk. Res. Rep.
, vol.2
, pp. 1-3
-
-
Andersen, C.L.1
Asmar, F.2
Klausen, T.3
Hasselbalch, H.4
Grønbæk, K.5
-
3
-
-
84904252718
-
Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization
-
CycliX Consortium
-
Bonhoure N., Bounova G., Bernasconi D., Praz V., Lammers F., Canella D., Willis I.M., Herr W., Hernandez N., Delorenzi M. Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization. Genome Res. 2014, 24:1157-1168. CycliX Consortium.
-
(2014)
Genome Res.
, vol.24
, pp. 1157-1168
-
-
Bonhoure, N.1
Bounova, G.2
Bernasconi, D.3
Praz, V.4
Lammers, F.5
Canella, D.6
Willis, I.M.7
Herr, W.8
Hernandez, N.9
Delorenzi, M.10
-
4
-
-
84953635706
-
An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations
-
Brind'Amour J., Liu S., Hudson M., Chen C., Karimi M., Lorincz M. An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations. Nat. Comms. 2015, 6:1157.
-
(2015)
Nat. Comms.
, vol.6
, pp. 1157
-
-
Brind'Amour, J.1
Liu, S.2
Hudson, M.3
Chen, C.4
Karimi, M.5
Lorincz, M.6
-
5
-
-
84922880631
-
A high-throughput ChIP-Seq for large-scale chromatin studies
-
Chabbert C.D., Adjalley S.H., Klaus B., Fritsch E.S., Gupta I., Pelechano V., Steinmetz L.M. A high-throughput ChIP-Seq for large-scale chromatin studies. Mol. Syst. Biol. 2015, 11:777.
-
(2015)
Mol. Syst. Biol.
, vol.11
, pp. 777
-
-
Chabbert, C.D.1
Adjalley, S.H.2
Klaus, B.3
Fritsch, E.S.4
Gupta, I.5
Pelechano, V.6
Steinmetz, L.M.7
-
6
-
-
84875700725
-
Predicting the molecular complexity of sequencing libraries
-
Daley T., Smith A.D. Predicting the molecular complexity of sequencing libraries. Nat. Methods 2013, 10:325-327.
-
(2013)
Nat. Methods
, vol.10
, pp. 325-327
-
-
Daley, T.1
Smith, A.D.2
-
7
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium
-
Dunham I., Kundaje A., Aldred S., Collins P., Davis C., Doyle F., Epstein C., Frietze S., Harrow J., Kaul R., et al. An integrated encyclopedia of DNA elements in the human genome. Nature 2012, 489:57-74. ENCODE Project Consortium.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Dunham, I.1
Kundaje, A.2
Aldred, S.3
Collins, P.4
Davis, C.5
Doyle, F.6
Epstein, C.7
Frietze, S.8
Harrow, J.9
Kaul, R.10
-
8
-
-
84923326765
-
Genetic and epigenetic fine mapping of causal autoimmune disease variants
-
Farh K.K., Marson A., Zhu J., Kleinewietfeld M., Housley W.J., Beik S., Shoresh N., Whitton H., Ryan R.J., Shishkin A.A., et al. Genetic and epigenetic fine mapping of causal autoimmune disease variants. Nature 2015, 518:337-343.
-
(2015)
Nature
, vol.518
, pp. 337-343
-
-
Farh, K.K.1
Marson, A.2
Zhu, J.3
Kleinewietfeld, M.4
Housley, W.J.5
Beik, S.6
Shoresh, N.7
Whitton, H.8
Ryan, R.J.9
Shishkin, A.A.10
-
9
-
-
84892366110
-
Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity
-
Ferrari K., Scelfo A., Jammula S., Cuomo A., Barozzi I., Stützer A., Fischle W., Bonaldi T., Pasini D. Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity. Mol. Cell 2013, 53:49-62.
-
(2013)
Mol. Cell
, vol.53
, pp. 49-62
-
-
Ferrari, K.1
Scelfo, A.2
Jammula, S.3
Cuomo, A.4
Barozzi, I.5
Stützer, A.6
Fischle, W.7
Bonaldi, T.8
Pasini, D.9
-
10
-
-
84866303839
-
A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals
-
Garber M., Yosef N., Goren A., Raychowdhury R., Thielke A., Guttman M., Robinson J., Minie B., Chevrier N., Itzhaki Z., et al. A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals. Mol. Cell 2012, 47:810-822.
-
(2012)
Mol. Cell
, vol.47
, pp. 810-822
-
-
Garber, M.1
Yosef, N.2
Goren, A.3
Raychowdhury, R.4
Thielke, A.5
Guttman, M.6
Robinson, J.7
Minie, B.8
Chevrier, N.9
Itzhaki, Z.10
-
11
-
-
84869234288
-
Limitations and possibilities of low cell number ChIP-seq
-
Gilfillan G.D., Hughes T., Sheng Y., Hjorthaug H.S., Straub T., Gervin K., Harris J.R., Undlien D.E., Lyle R. Limitations and possibilities of low cell number ChIP-seq. BMC Genomics 2012, 13:645.
-
(2012)
BMC Genomics
, vol.13
, pp. 645
-
-
Gilfillan, G.D.1
Hughes, T.2
Sheng, Y.3
Hjorthaug, H.S.4
Straub, T.5
Gervin, K.6
Harris, J.R.7
Undlien, D.E.8
Lyle, R.9
-
12
-
-
84938740703
-
Calibrating ChIP-Seq with nucleosomal internal standards to measure histone modification density genome wide
-
Grzybowski A.T., Chen Z., Ruthenburg A.J. Calibrating ChIP-Seq with nucleosomal internal standards to measure histone modification density genome wide. Mol. Cell 2015, 58:886-899.
-
(2015)
Mol. Cell
, vol.58
, pp. 886-899
-
-
Grzybowski, A.T.1
Chen, Z.2
Ruthenburg, A.J.3
-
13
-
-
84929678227
-
Designing cell-type-specific genome-wide experiments
-
Handley A., Schauer T., Ladurner A.G., Margulies C.E. Designing cell-type-specific genome-wide experiments. Mol. Cell 2015, 58:621-631.
-
(2015)
Mol. Cell
, vol.58
, pp. 621-631
-
-
Handley, A.1
Schauer, T.2
Ladurner, A.G.3
Margulies, C.E.4
-
14
-
-
79959882452
-
Linear amplification for deep sequencing
-
Hoeijmakers W.A., Bártfai R., Françoijs K.-J., Stunnenberg H.G. Linear amplification for deep sequencing. Nat. Protoc. 2011, 6:1026-1036.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1026-1036
-
-
Hoeijmakers, W.A.1
Bártfai, R.2
Françoijs, K.-J.3
Stunnenberg, H.G.4
-
15
-
-
84887108791
-
Global chromatin profiling reveals NSD2 mutations in pediatric acute lymphoblastic leukemia
-
Jaffe J.D., Wang Y., Chan H.M., Zhang J., Huether R., Kryukov G.V., Bhang H.E., Taylor J.E., Hu M., Englund N.P., et al. Global chromatin profiling reveals NSD2 mutations in pediatric acute lymphoblastic leukemia. Nat. Genet. 2013, 45:1386-1391.
-
(2013)
Nat. Genet.
, vol.45
, pp. 1386-1391
-
-
Jaffe, J.D.1
Wang, Y.2
Chan, H.M.3
Zhang, J.4
Huether, R.5
Kryukov, G.V.6
Bhang, H.E.7
Taylor, J.E.8
Hu, M.9
Englund, N.P.10
-
16
-
-
84929692173
-
The cancer cell map initiative: defining the hallmark networks of cancer
-
Krogan N.J., Lippman S., Agard D.A., Ashworth A., Ideker T. The cancer cell map initiative: defining the hallmark networks of cancer. Mol. Cell 2015, 58:690-698.
-
(2015)
Mol. Cell
, vol.58
, pp. 690-698
-
-
Krogan, N.J.1
Lippman, S.2
Agard, D.A.3
Ashworth, A.4
Ideker, T.5
-
17
-
-
84929281565
-
Quantitative dynamics of chromatin remodeling during germ cell specification from mouse embryonic stem cells
-
Kurimoto K., Yabuta Y., Hayashi K., Ohta H., Kiyonari H., Mitani T., Moritoki Y., Kohri K., Kimura H., Yamamoto T., et al. Quantitative dynamics of chromatin remodeling during germ cell specification from mouse embryonic stem cells. Cell Stem Cell 2015, 16:517-532.
-
(2015)
Cell Stem Cell
, vol.16
, pp. 517-532
-
-
Kurimoto, K.1
Yabuta, Y.2
Hayashi, K.3
Ohta, H.4
Kiyonari, H.5
Mitani, T.6
Moritoki, Y.7
Kohri, K.8
Kimura, H.9
Yamamoto, T.10
-
18
-
-
84959333048
-
-
April., International. WO2014053491A1
-
Labelle, M., Boesen, T., Mehrotra, M., Khan, Q., and Ullah, F. April 2014. Inhibitors of histone demethylases. International patent. WO2014053491A1.
-
(2014)
Inhibitors of histone demethylases.
-
-
Labelle, M.1
Boesen, T.2
Mehrotra, M.3
Khan, Q.4
Ullah, F.5
-
19
-
-
84907419194
-
Immunogenetics. Chromatin state dynamics during blood formation
-
Lara-Astiaso D., Weiner A., Lorenzo-Vivas E., Zaretsky I., Jaitin D.A., David E., Keren-Shaul H., Mildner A., Winter D., Jung S., et al. Immunogenetics. Chromatin state dynamics during blood formation. Science 2014, 345:943-949.
-
(2014)
Science
, vol.345
, pp. 943-949
-
-
Lara-Astiaso, D.1
Weiner, A.2
Lorenzo-Vivas, E.3
Zaretsky, I.4
Jaitin, D.A.5
David, E.6
Keren-Shaul, H.7
Mildner, A.8
Winter, D.9
Jung, S.10
-
20
-
-
84879421185
-
The transcriptional architecture of early human hematopoiesis identifies multilevel control of lymphoid commitment
-
Laurenti E., Doulatov S., Zandi S., Plumb I., Chen J., April C., Fan J.-B., Dick J.E. The transcriptional architecture of early human hematopoiesis identifies multilevel control of lymphoid commitment. Nat. Immunol. 2013, 14:756-763.
-
(2013)
Nat. Immunol.
, vol.14
, pp. 756-763
-
-
Laurenti, E.1
Doulatov, S.2
Zandi, S.3
Plumb, I.4
Chen, J.5
April, C.6
Fan, J.-B.7
Dick, J.E.8
-
21
-
-
0037812450
-
Development and validation of a T7 based linear amplification for genomic DNA
-
Liu C.L., Schreiber S.L., Bernstein B.E. Development and validation of a T7 based linear amplification for genomic DNA. BMC Genomics 2003, 4:19.
-
(2003)
BMC Genomics
, vol.4
, pp. 19
-
-
Liu, C.L.1
Schreiber, S.L.2
Bernstein, B.E.3
-
22
-
-
84891854229
-
EZH2 in normal and malignant hematopoiesis
-
Lund K., Adams P.D., Copland M. EZH2 in normal and malignant hematopoiesis. Leukemia 2013, 28:44-49.
-
(2013)
Leukemia
, vol.28
, pp. 44-49
-
-
Lund, K.1
Adams, P.D.2
Copland, M.3
-
23
-
-
84870573126
-
EZH2 inhibition as a therapeutic strategy for lymphoma with EZH2-activating mutations
-
McCabe M.T., Ott H.M., Ganji G., Korenchuk S., Thompson C., Van Aller G.S., Liu Y., Graves A.P., Della Pietra A., Diaz E., et al. EZH2 inhibition as a therapeutic strategy for lymphoma with EZH2-activating mutations. Nature 2012, 492:108-112.
-
(2012)
Nature
, vol.492
, pp. 108-112
-
-
McCabe, M.T.1
Ott, H.M.2
Ganji, G.3
Korenchuk, S.4
Thompson, C.5
Van Aller, G.S.6
Liu, Y.7
Graves, A.P.8
Della Pietra, A.9
Diaz, E.10
-
24
-
-
84863165348
-
Mutation of A677 in histone methyltransferase EZH2 in human B-cell lymphoma promotes hypertrimethylation of histone H3 on lysine 27 (H3K27)
-
McCabe M.T., Graves A.P., Ganji G., Diaz E., Halsey W.S., Jiang Y., Smitheman K.N., Ott H.M., Pappalardi M.B., Allen K.E., et al. Mutation of A677 in histone methyltransferase EZH2 in human B-cell lymphoma promotes hypertrimethylation of histone H3 on lysine 27 (H3K27). Proc. Natl. Acad. Sci. USA 2012, 109:2989-2994.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 2989-2994
-
-
McCabe, M.T.1
Graves, A.P.2
Ganji, G.3
Diaz, E.4
Halsey, W.S.5
Jiang, Y.6
Smitheman, K.N.7
Ott, H.M.8
Pappalardi, M.B.9
Allen, K.E.10
-
25
-
-
33745549658
-
Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations
-
O'Neill L.P., VerMilyea M.D., Turner B.M. Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations. Nat. Genet. 2006, 38:835-841.
-
(2006)
Nat. Genet.
, vol.38
, pp. 835-841
-
-
O'Neill, L.P.1
VerMilyea, M.D.2
Turner, B.M.3
-
26
-
-
84919716184
-
Quantitative ChIP-Seq normalization reveals global modulation of the epigenome
-
Orlando D.A., Chen M.W., Brown V.E., Solanki S., Choi Y.J., Olson E.R., Fritz C.C., Bradner J.E., Guenther M.G. Quantitative ChIP-Seq normalization reveals global modulation of the epigenome. Cell Rep. 2014, 9:1163-1170.
-
(2014)
Cell Rep.
, vol.9
, pp. 1163-1170
-
-
Orlando, D.A.1
Chen, M.W.2
Brown, V.E.3
Solanki, S.4
Choi, Y.J.5
Olson, E.R.6
Fritz, C.C.7
Bradner, J.E.8
Guenther, M.G.9
-
27
-
-
84862635654
-
Molecular biology. Genetic events that shape the cancer epigenome
-
Ryan R.J., Bernstein B.E. Molecular biology. Genetic events that shape the cancer epigenome. Science 2012, 336:1513-1514.
-
(2012)
Science
, vol.336
, pp. 1513-1514
-
-
Ryan, R.J.1
Bernstein, B.E.2
-
28
-
-
83355173202
-
EZH2 codon 641 mutations are common in BCL2-rearranged germinal center B cell lymphomas
-
Ryan R.J., Nitta M., Borger D., Zukerberg L.R., Ferry J.A., Harris N.L., Iafrate A.J., Bernstein B.E., Sohani A.R., Le L.P. EZH2 codon 641 mutations are common in BCL2-rearranged germinal center B cell lymphomas. PLoS ONE 2011, 6:e28585.
-
(2011)
PLoS ONE
, vol.6
, pp. e28585
-
-
Ryan, R.J.1
Nitta, M.2
Borger, D.3
Zukerberg, L.R.4
Ferry, J.A.5
Harris, N.L.6
Iafrate, A.J.7
Bernstein, B.E.8
Sohani, A.R.9
Le, L.P.10
-
29
-
-
79959838441
-
Single-tube linear DNA amplification (LinDA) for robust ChIP-seq
-
Shankaranarayanan P., Mendoza-Parra M.-A., Walia M., Wang L., Li N., Trindade L.M., Gronemeyer H. Single-tube linear DNA amplification (LinDA) for robust ChIP-seq. Nat. Methods 2011, 8:565-567.
-
(2011)
Nat. Methods
, vol.8
, pp. 565-567
-
-
Shankaranarayanan, P.1
Mendoza-Parra, M.-A.2
Walia, M.3
Wang, L.4
Li, N.5
Trindade, L.M.6
Gronemeyer, H.7
-
30
-
-
78650454078
-
Coordinated activities of wild-type plus mutant EZH2 drive tumor-associated hypertrimethylation of lysine 27 on histone H3 (H3K27) in human B-cell lymphomas
-
Sneeringer C.J., Scott M.P., Kuntz K.W., Knutson S.K., Pollock R.M., Richon V.M., Copeland R.A. Coordinated activities of wild-type plus mutant EZH2 drive tumor-associated hypertrimethylation of lysine 27 on histone H3 (H3K27) in human B-cell lymphomas. Proc. Natl. Acad. Sci. USA 2010, 107:20980-20985.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 20980-20985
-
-
Sneeringer, C.J.1
Scott, M.P.2
Kuntz, K.W.3
Knutson, S.K.4
Pollock, R.M.5
Richon, V.M.6
Copeland, R.A.7
-
31
-
-
28944439650
-
Extended upstream A-T sequence increases T7 promoter strength
-
Tang G.-Q., Bandwar R.P., Patel S.S. Extended upstream A-T sequence increases T7 promoter strength. J. Biol. Chem. 2005, 280:40707-40713.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 40707-40713
-
-
Tang, G.-Q.1
Bandwar, R.P.2
Patel, S.S.3
-
32
-
-
80053279825
-
The Y641C mutation of EZH2 alters substrate specificity for histone H3 lysine 27 methylation states
-
Wigle T.J., Knutson S.K., Jin L., Kuntz K.W., Pollock R.M., Richon V.M., Copeland R.A., Scott M.P. The Y641C mutation of EZH2 alters substrate specificity for histone H3 lysine 27 methylation states. FEBS Lett. 2011, 585:3011-3014.
-
(2011)
FEBS Lett.
, vol.585
, pp. 3011-3014
-
-
Wigle, T.J.1
Knutson, S.K.2
Jin, L.3
Kuntz, K.W.4
Pollock, R.M.5
Richon, V.M.6
Copeland, R.A.7
Scott, M.P.8
-
33
-
-
84873310426
-
Genome-wide chromatin state transitions associated with developmental and environmental cues
-
Zhu J., Adli M., Zou J.Y., Verstappen G., Coyne M., Zhang X., Durham T., Miri M., Deshpande V., De Jager P.L., et al. Genome-wide chromatin state transitions associated with developmental and environmental cues. Cell 2013, 152:642-654.
-
(2013)
Cell
, vol.152
, pp. 642-654
-
-
Zhu, J.1
Adli, M.2
Zou, J.Y.3
Verstappen, G.4
Coyne, M.5
Zhang, X.6
Durham, T.7
Miri, M.8
Deshpande, V.9
De Jager, P.L.10
|