Characterization of circular RNAs

Methods in Molecular Biology

Volumn 1402, Issue , 2016, Pages 215-227

  Zhang, Yang ^a   Yang, Li ^a   Chen, Ling Ling ^a  

^a NONE

Author keywords

circRNAs; Circular RNAs; ciRNAs; RNA fractionation; RNase R

Indexed keywords

CIRCULAR RNA; RNA; TRANSCRIPTOME; UNCLASSIFIED DRUG; RNA, CIRCULAR;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; COVALENT BOND; EXON; INTRON; RNA ANALYSIS; RNA SPLICING; ANIMAL; DENATURING GRADIENT GEL ELECTROPHORESIS; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; ISOLATION AND PURIFICATION; MOUSE; NORTHERN BLOTTING; PROCEDURES; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS;

ANIMALS; BLOTTING, NORTHERN; DENATURING GRADIENT GEL ELECTROPHORESIS; EXONS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; INTRONS; MICE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA; RNA SPLICING; SEQUENCE ANALYSIS, RNA; TRANSCRIPTOME;

EID: 84953330560     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-3378-5_17     Document Type: Chapter

References (22)

1. Sanger HL et al (1976) Viroids are singlestranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures. Proc Natl Acad Sci U S A 73:3852- 3856
2. Arnberg AC et al (1980) Some yeast mitochondrial RNAs are circular. Cell 19: 313-319
3. Kos A et al (1986) The hepatitis delta (delta) virus possesses a circular RNA. Nature 323: 558-560
4. Nigro JM et al (1991) Scrambled exons. Cell 64:607-613
5. Cocquerelle C et al (1992) Splicing with inverted order of exons occurs proximal to large introns. EMBO J 11:1095-1098
6. Capel B et al (1993) Circular transcripts of the testis-determining gene Sry in adult mouse testis. Cell 73:1019-1030
7. Burd CE et al (2010) Expression of linear and novel circular forms of an INK4/ARFassociated non-coding RNA correlates with atherosclerosis risk. PLoS Genet 6:e1001233
8. Hansen TB et al (2011) miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA. EMBO J 30:4414-4422
9. Hansen TB et al (2013) Natural RNA circles function as efficient microRNA sponges. Nature 495:384-388
10. Memczak S et al (2013) Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 495:333-338
11. Graveley BR et al (2008) Molecular biology: power sequencing. Nature 453:1197-1198
12. Yang L et al (2011) Genomewide characterization of non-polyadenylated RNAs. Genome Biol 12:R16
13. Zhang Y et al (2013) Circular intronic long noncoding RNAs. Mol Cell 51:792-806
14. Salzman J et al (2012) Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. PLoS One 7:e30733
15. Zhang XO et al (2014) Complementary sequence-mediated exon circularization. Cell 159:134-147
16. Zhang Y, Yang L, Chen LL (2014) Life without A tail: new formats of long noncoding RNAs. Int J Biochem Cell Biol 54:338-349
17. Jeck WR et al (2013) Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA 19:141-157
18. Salzman J et al (2013) Cell-type specific features of circular RNA expression. PLoS Genet 9:e1003777
19. Wang PL et al (2014) Circular RNA is expressed across the eukaryotic tree of life. PLoS One 9:e90859
20. Westholm JO et al (2014) Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age- dependent neural accumulation. Cell Rep 9:1966-1980
21. Yin QF, Chen LL, Yang L (2015) Fractionation of non-polyadenylated and ribosomal-free RNAs from mammalian cells. Methods Mol Biol 1206:69-80
22. Suzuki H et al (2006) Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from premRNA splicing. Nucleic Acids Res 34:e63