-
1
-
-
84893443187
-
An extensive evaluation of read trimming effects on Illumina NGS data analysis
-
Del Fabbro, C., Scalabrin, S., Morgante, M., and Giorgi, F.M. (2013) An extensive evaluation of read trimming effects on Illumina NGS data analysis. PLoS ONE 8: e85024.
-
(2013)
PLoS ONE
, vol.8
, pp. e85024
-
-
Del Fabbro, C.1
Scalabrin, S.2
Morgante, M.3
Giorgi, F.M.4
-
2
-
-
84876266928
-
QUAST: quality assessment tool for genome assemblies
-
Gurevich, A., Saveliev, V., Vyahhi, N., and Tesler, G. (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics 29: 1072-1075.
-
(2013)
Bioinformatics
, vol.29
, pp. 1072-1075
-
-
Gurevich, A.1
Saveliev, V.2
Vyahhi, N.3
Tesler, G.4
-
3
-
-
84905504592
-
Recently published Streptomyces genome sequences
-
Harrison, J., and Studholme, D.J. (2014) Recently published Streptomyces genome sequences. Microb Biotechnol 7: 373-380.
-
(2014)
Microb Biotechnol
, vol.7
, pp. 373-380
-
-
Harrison, J.1
Studholme, D.J.2
-
4
-
-
84997783038
-
De novo assembly of the Streptomyces sp. strain Mg1 genome using PacBio single-molecule sequencing
-
Hoefler, B.C., Konganti, K., and Straight, P.D.P. (2013) De novo assembly of the Streptomyces sp. strain Mg1 genome using PacBio single-molecule sequencing. Genome Announc 1: 1-2.
-
(2013)
Genome Announc
, vol.1
, pp. 1-2
-
-
Hoefler, B.C.1
Konganti, K.2
Straight, P.D.P.3
-
5
-
-
84878076144
-
REAPR: a universal tool for genome assembly evaluation
-
Hunt, M., Kikuchi, T., Sanders, M., Newbold, C., Berriman, M., and Otto, T.D. (2013) REAPR: a universal tool for genome assembly evaluation. Genome Biol 14: R47.
-
(2013)
Genome Biol
, vol.14
, pp. R47
-
-
Hunt, M.1
Kikuchi, T.2
Sanders, M.3
Newbold, C.4
Berriman, M.5
Otto, T.D.6
-
6
-
-
78651301328
-
The sequence read archive
-
Leinonen, R., Sugawara, H., and Shumway, M. (2011) The sequence read archive. Nucleic Acids Res 39: D19-D21.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D19-D21
-
-
Leinonen, R.1
Sugawara, H.2
Shumway, M.3
-
7
-
-
84880196418
-
GAGE-B: an evaluation of genome assemblers for bacterial organisms
-
Magoc, T., Pabinger, S., Canzar, S., Liu, X., Su, Q., Puiu, D., et al. (2013) GAGE-B: an evaluation of genome assemblers for bacterial organisms. Bioinformatics 29: 1718-1725.
-
(2013)
Bioinformatics
, vol.29
, pp. 1718-1725
-
-
Magoc, T.1
Pabinger, S.2
Canzar, S.3
Liu, X.4
Su, Q.5
Puiu, D.6
-
8
-
-
84874194145
-
Sequence assembly demystified
-
Nagarajan, N., and Pop, M. (2013) Sequence assembly demystified. Nat Rev Genet 14: 157-167.
-
(2013)
Nat Rev Genet
, vol.14
, pp. 157-167
-
-
Nagarajan, N.1
Pop, M.2
-
9
-
-
34249848751
-
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
-
Parra, G., Bradnam, K., and Korf, I. (2007) CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23: 1061-1067.
-
(2007)
Bioinformatics
, vol.23
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
10
-
-
58549121169
-
Assessing the gene space in draft genomes
-
Parra, G., Bradnam, K., Ning, Z., Keane, T., and Korf, I. (2009) Assessing the gene space in draft genomes. Nucleic Acids Res 37: 289-297.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 289-297
-
-
Parra, G.1
Bradnam, K.2
Ning, Z.3
Keane, T.4
Korf, I.5
-
11
-
-
84940907209
-
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
-
Simão, F.A., Waterhouse, R.M., Ioannidis, P., Kriventseva, E.V., and Zdobnov, E.M. (2015) BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31: 3210-3212.
-
(2015)
Bioinformatics
, vol.31
, pp. 3210-3212
-
-
Simão, F.A.1
Waterhouse, R.M.2
Ioannidis, P.3
Kriventseva, E.V.4
Zdobnov, E.M.5
-
12
-
-
84893193186
-
Insights into naturally minimized Streptomyces albus J1074 genome
-
Zaburannyi, N., Rabyk, M., Ostash, B., Fedorenko, V., and Luzhetskyy, A. (2014) Insights into naturally minimized Streptomyces albus J1074 genome. BMC Genom 15: 97.
-
(2014)
BMC Genom
, vol.15
, pp. 97
-
-
Zaburannyi, N.1
Rabyk, M.2
Ostash, B.3
Fedorenko, V.4
Luzhetskyy, A.5
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