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Volumn 9, Issue 1, 2016, Pages 3-7

Genome Update. Let the consumer beware: Streptomyces genome sequence quality

Author keywords

[No Author keywords available]

Indexed keywords

CONSUMER; GENBANK; GENOME; HUMAN; MODEL; SPECIES; STREPTOMYCES; BACTERIAL GENOME; DNA SEQUENCE; GENETICS; NUCLEIC ACID DATABASE; PROCEDURES; STANDARDS;

EID: 84953318917     PISSN: 17517907     EISSN: 17517915     Source Type: Journal    
DOI: 10.1111/1751-7915.12344     Document Type: Article
Times cited : (17)

References (12)
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    • An extensive evaluation of read trimming effects on Illumina NGS data analysis
    • Del Fabbro, C., Scalabrin, S., Morgante, M., and Giorgi, F.M. (2013) An extensive evaluation of read trimming effects on Illumina NGS data analysis. PLoS ONE 8: e85024.
    • (2013) PLoS ONE , vol.8 , pp. e85024
    • Del Fabbro, C.1    Scalabrin, S.2    Morgante, M.3    Giorgi, F.M.4
  • 2
    • 84876266928 scopus 로고    scopus 로고
    • QUAST: quality assessment tool for genome assemblies
    • Gurevich, A., Saveliev, V., Vyahhi, N., and Tesler, G. (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics 29: 1072-1075.
    • (2013) Bioinformatics , vol.29 , pp. 1072-1075
    • Gurevich, A.1    Saveliev, V.2    Vyahhi, N.3    Tesler, G.4
  • 3
    • 84905504592 scopus 로고    scopus 로고
    • Recently published Streptomyces genome sequences
    • Harrison, J., and Studholme, D.J. (2014) Recently published Streptomyces genome sequences. Microb Biotechnol 7: 373-380.
    • (2014) Microb Biotechnol , vol.7 , pp. 373-380
    • Harrison, J.1    Studholme, D.J.2
  • 4
    • 84997783038 scopus 로고    scopus 로고
    • De novo assembly of the Streptomyces sp. strain Mg1 genome using PacBio single-molecule sequencing
    • Hoefler, B.C., Konganti, K., and Straight, P.D.P. (2013) De novo assembly of the Streptomyces sp. strain Mg1 genome using PacBio single-molecule sequencing. Genome Announc 1: 1-2.
    • (2013) Genome Announc , vol.1 , pp. 1-2
    • Hoefler, B.C.1    Konganti, K.2    Straight, P.D.P.3
  • 7
    • 84880196418 scopus 로고    scopus 로고
    • GAGE-B: an evaluation of genome assemblers for bacterial organisms
    • Magoc, T., Pabinger, S., Canzar, S., Liu, X., Su, Q., Puiu, D., et al. (2013) GAGE-B: an evaluation of genome assemblers for bacterial organisms. Bioinformatics 29: 1718-1725.
    • (2013) Bioinformatics , vol.29 , pp. 1718-1725
    • Magoc, T.1    Pabinger, S.2    Canzar, S.3    Liu, X.4    Su, Q.5    Puiu, D.6
  • 8
    • 84874194145 scopus 로고    scopus 로고
    • Sequence assembly demystified
    • Nagarajan, N., and Pop, M. (2013) Sequence assembly demystified. Nat Rev Genet 14: 157-167.
    • (2013) Nat Rev Genet , vol.14 , pp. 157-167
    • Nagarajan, N.1    Pop, M.2
  • 9
    • 34249848751 scopus 로고    scopus 로고
    • CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
    • Parra, G., Bradnam, K., and Korf, I. (2007) CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23: 1061-1067.
    • (2007) Bioinformatics , vol.23 , pp. 1061-1067
    • Parra, G.1    Bradnam, K.2    Korf, I.3
  • 11
    • 84940907209 scopus 로고    scopus 로고
    • BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
    • Simão, F.A., Waterhouse, R.M., Ioannidis, P., Kriventseva, E.V., and Zdobnov, E.M. (2015) BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31: 3210-3212.
    • (2015) Bioinformatics , vol.31 , pp. 3210-3212
    • Simão, F.A.1    Waterhouse, R.M.2    Ioannidis, P.3    Kriventseva, E.V.4    Zdobnov, E.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.