Biogeochemical Consequences of Infaunal Activities

Interactions Between Macro- and Microorganisms in Marine Sediments

Volumn , Issue , 2013, Pages 159-177

  Furukawa, Yoko ^a  

^a STENNIS SPACE CENTER   (United States)

Author keywords

Interactions between macro and microorganisms in marine sediments

Indexed keywords

BIOGEOCHEMISTRY; SEDIMENTS; SUBMARINE GEOLOGY;

AEROBIC RESPIRATION; COMPREHENSIVE MODEL; INFAUNAL ACTIVITY; INTERACTION MECHANISMS; MACRO-AND MICROORGANISM; PARTICULATE SPECIES; SEDIMENTARY PROCESS; SEDIMENTARY SYSTEMS;

SEDIMENTOLOGY;

EID: 84952760536     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1029/CE060p0159     Document Type: Chapter

References (71)

1. Aller, R. C, Quantifying solute distributions in the bioturbated zone of marine sediments by defining an average micro environment. Geochim. Cosmochim. Acta 44, 1955-1965, 1980.
2. Aller, R. C, Bioturbation and remineralization of sedimentary organic matter - effects of redox oscillation. Chem. Geol. 114, 331-345, 1994.
3. Aller, R. C. and J. Y. Aller, The effect of biogenic irrigation intensity and solute exchange on diagenetic reaction rates in marine sediments. J. Mar. Res. 56, 905-936, 1998.
4. Aller, R. C, and J. Y. Yingst, Biogeochemistry of tube-dwellings - study of the sedentary polychaete Amphitrite omata (Leidy). J. Mar. Res. 36, 201-254, 1978.
5. Aller, R. C, J. Y. Yingst, and W. J. Ullman, Comparative biogeochemistry of water in intertidal Onuphis (Polychaeta) and Upogebia (Crustacea) burrows - temporal patterns and causes. J. Mar. Res. 41,571-604, 1983.
6. Bartoli, M., D. Nizzoli, D. T. Welsh, and P. Viaroli, Short-term influence of recolonisation by the polycheate worm Nereis succinea on oxygen and nitrogen fluxes and denitrification: a microcosm simulation. Hydrobiologia, 431, 165-174, 2000.
7. Berg, P., S. Rysgaard, and B. Thamdrup, Dynamic modeling of early diagenesis and nutrient cycling. A case study in an Arctic marine sediment. Am. J. Sci. 303, 905-955, 2003.
8. Bemer, R. A., An idealized model of dissolved sulfate distribution in recent sediments. Geochim. Cosmochim. Acta 28, 1497-1503, 1964.
9. Bird, F. L., P. I. Boon, and P. D. Nichols, Physicochemical and microbial properties of burrows of the deposit-feeding thalassinidean ghost shrimp Biffarius arenosus (Decapoda: Callianassidae). Estuar. Coast. Shelf Sci. 51, 279-291, 2000.
10. Blair, N. E., L. A. Levin, D. J. DeMaster, and G. Plaia, The short-term fate of fresh algal carbon in continental slope sediments. Limnol. Oceanogr. 41, 1208-1219, 1996.
11. Boudreau, B. P., On the equivalence of nonlocal and radial diffusion models for porewater irrigation. J. Mar. Res. 42, 731-735, 1984.
12. Boudreau, B. P., Diagenetic Models and Their Implementation: Modelling Transport and Reaction in Aquatic Sediments, 414 p. pp., Springer-Verlag, New York, 1996.
13. Bridges, T. S., J. D. Farrar, E. V. Gamble, and T. M. Dillon, Intraspecific density effects in Nereis (Neanthes) arenaceodentata Moore (Polychaeta: Nereidae). J. Exp. Mar. Biol. Ecol. 195, 221-235, 1996.
14. Cai, W. J. and F. L. Sayles, Oxygen penetration depths and fluxes in marine sediments. Mar. Chem. 52, 123-131, 1996.
15. Caradec, S., V. Grossi, F. Gilbert, C. Guigue, and M. Goutx, Influence of various redox conditions on the degradation of microalgal triacylglycerols and fatty acids in marine sediments. Org. Geochem., 35, 277-287, 2004.
16. Cutter, G. R. and R. J. Diaz, Biological alteration of physically structured flood deposits on the Eel margin, northern California. Cont. Shelf Res. 20, 235-253, 2000.
17. Davey, J. T., The architecture of the burrow of Nereis diversicolor and its quantification in relation to sediment-water exchange. J. Exp. Mar. Biol. Ecol. 179, 115-129, 1994.
18. D'Andrea, A. F. and G. R. Lopez, Benthic macrofauna in a shallow water carbonate sediment: major bioturbators at the Dry Tortugas. Geo Mar. Lett. 17, 276-282, 1997.
19. Demaster, D. J. and J. K. Cochran, Particle mixing rates in deep-sea sediments determined from excess Pb-210 and Si-32 profiles. Earth Planet. Sci. Lett. 61, 257-271, 1982.
20. Emerson, S., R. Jahnke, and D. Heggie, Sediment-water exchange in shallow-water estuarine sediments. J. Mar. Res. 42, 709-730, 1984.
21. Forster, S. and G. Graf, Impact of irrigation on oxygen flux into the sediment - intermittent pumping by Callianassa subterránea and piston-pumping by Lanice conchilega. Mar. Biol. 123, 335-346, 1995.
22. Francois, F., M. Gerino, G. Stora, J. P. Durbec, and J. C. Poggiale, Functional approach to sediment reworking by gallery-forming macrobenthic organisms: modeling and application with the polychaete Nereis diversicolor. Mar. Ecol. Prog. Ser. 229, 127-136, 2002.
23. Furukawa, Y., Biogeochemical consequences of macrofauna burrow ventilation. Geochem. Trans. 2, 83-91, 2001.
24. Furukawa, Y., S. J. Bentley, and D. L. Lavoie, Bioirrigation modeling in experimental benthic mesocosms. J. Mar. Res. 59, 417-452, 2001.
25. Furukawa, Y., S. J. Bentley, A. M. Shiller, D. L. Lavoie, and P. Van Cappellen, The role of biologically-enhanced pore water transport in early diagenesis: An example from carbonate sediments in the vicinity of North Key Harbor, Dry Tortugas National Park, Florida. J. Mar. Res. 58,493-522, 2000.
26. Furukawa, Y., A. C. Smith, J. E. Kostka, J. Watkins, and C. R. Alexander, Quantification of macrobenthic impacts on diagenesis using a multicomponent inverse model in salt marsh sediments. Limnol. Oceanogr. 49, 2058-2072, 2004.
27. Gerino, M., The effects of bioturbation on particle redistribution in Mediterranean coastal sediment - preliminary results. Hydrobiologia, 207, 251-258, 1990.
28. Gilbert, F., R. C. Aller, and S. Hulth, The influence of macrofaunal burrow spacing and diffusive scaling on sedimentary nitrification and denitrification: An experimental simulation and model approach. J. Mar. Res. 61, 101-125, 2003a.
29. Gilbert, F., S. Hulth, N. Stromberg, K. Ringdahl, and J. C. Poggiale, 2-D optical quantification of particle reworking activities in marine surface sediments. J. Exp. Mar. Biol. Ecol. 285, 251-263, 2003b.
30. Glud, R. N., A. Tengberg, M. Kuhl, P. O. J. Hall, I. Klimant, and G. Host, An in situ instrument for planar Oj optode measurements at benthic interfaces. Limnol. Oceanogr. 46,2073-2080, 2001.
31. Goni-Urriza, M., X. de Montaudouin, R. Guyoneaud, G. Bachelet, and R. de Wit, Effect of macrofaunal bioturbation on bacterial distribution in marine sandy sediments, with special reference to sulphur-oxidising bacteria. J. Sea Res. 41, 269-279, 1999.
32. Hee, C. A., T. K. Pease, M. J. Alperin, and C. S. Martens, Dissolved organic carbon production and consumption in anoxic marine sediments: A pulsed-tracer experiment. Limnol. Oceanogr. 46, 1908-1920, 2001.
33. Hulth, S., R. C. Aller, R Engstrom, and E. Selander, A pH plate fluorosensor (optode) for early diagenetic studies of marine sediments. Limnol. Oceanogr. 47, 212-220, 2002.
34. Hulthe, G., S. Hulth, and P. O. J. Hall, Effect of oxygen on degradation rate of refractory and labile organic matter in continental margin sediments. Geochim. Cosmochim. Acta 62, 1319-1328, 1998.
35. Jensen, M. M., B. Thamdrup, S. Rysgaard, M. Holmer, and H. Fossing, Rates and regulation of microbial iron reduction in sediments of the Baltic-North Sea transition. Biogeochemistry, 65, 295-317, 2003.
36. Jørgensen, B. B. and F. Bak, Pathways and microbiology of thiosulfate transformations and sulfate reduction in a marine sediment (Kattegat, Denmark). Appl. Environ. Microbiol. 57, 847-856, 1991.
37. Jørgensen, B. B. and N. P. Revsbech, Diffusive boundary-layers and the oxygen uptake of sediments and detritus. Limnol. Oceanogr. 30, 111-122, 1985.
38. Koretsky, C. M., C. Meile, and P. Van Cappellen, Quantifying bioirrigation using ecological parameters: a stochastic approach. Geochem Trans. 3, 83-91, 2002.
39. Kristensen, E., Oxygen and carbon dioxide exchange in the polychaete Nereis virens - influence of ventilation activity and starvation. Mar. Biol. 101, 381-388, 1989.
40. Kristensen, E., Organic matter diagenesis at the oxic/anoxic interface in coastal marine sediments, with emphasis on the role of burrowing animals. Hydrobiologia, 426, 1-24, 2000.
41. Kristensen, E., Impact of polychaetes (Nereis spp. and Arenicola marina) on carbon biogeochemistry in coastal marine sediments, Geochem. Trans. 2, 92-103, 2001.
42. Kristensen, E., S. I. Ahmed, and A. H. Devol, Aerobic and anaerobic decomposition of organic matter in marine sediment: Which is fastest? Limnol. Oceanogr. 40, 1430-1437, 1995.
43. Kristensen, E., R. C. Aller, and J. Y. Aller, Oxic and anoxic decomposition of tubes from the burrowing seaanemone Ceriantheopsis americanus - implications for bulk sediment carbon and nitrogen balance. J. Mar. Res. 49, 589-617, 1991a.
44. Kristensen, E., M. H. Jensen, and R. C. Aller, Direct measurement of dissolved inorganic nitrogen exchange and denitrification in individual polychaete (Nereis virens) burrows. J. Mar. Res. 49, 355-377, 1991b.
45. Levin, L., N. Blair, D. DeMaster, G. Plaia, W. Fomes, C. Martin, and C. Thomas, Rapid subduction of organic matter by maldanid polychaetes on the North Carolina slope. J. Mar. Res. 55, 595-611, 1997.
46. Lovell, C. R., C. C. Steward, and T. Phillips, Activity of marine sediment bacterial communities exposed to 4-bromophenol, a polychaete secondary metabolite. Mar. Ecol. Prog. Ser. 179, 241-246, 1999.
47. Lucas, F. S., G. Bertru, and M. G. Hofle, Characterization of free-living and attached bacteria in sediments colonized by Hediste diversicolor, Aquat. Microb. Ecol. 32, 165-174, 2003.
48. Marinelli, R. L., and B. P. Boudreau, An experimental and modeling study of pH and related solutes in an irrigated anoxic coastal sediment. J. Mar. Res. 54, 939-966, 1996.
49. Marinelli, R. L., C. R. Lovell, S. G. Wakeham, D. B. Ringelberg, and D. C. White, Experimental investigation of the control of bacterial community composition in macrofaunal burrows. Mar. Ecol. Prog. Ser.235, 1-13, 2002.
50. Meysman, F. J. R., B. P. Boudreau, and J. J. Middelburg, Relations between local, nonlocal, discrete and continuous models of bioturbation. J. Mar. Res. 61, 391-410, 2003.
51. Michaud, E., G. Desrosiers, B. Long, L. de Montety, J. F. Cremer, E. Pelletier, J. Locat, F. Gilbert, and G. Stora, Use of axial tomography to follow temporal changes of benthic communities in an unstable sedimentary environment (Baie des Ha! Ha!, Saguenay Fjord). J. Exp. Mar. Biol. Ecol. 285, 265-282, 2003.
52. Mugnai, C, M. Gerino, M. Frignani, S. Sauvage, and L. G. Bellucci, Bioturbation experiments in the Venice Lagoon. Hydrobiologia, 494, 245-250, 2003.
53. Nielsen, O. I., B. Gribsholt, E. Kristensen, and N. P. Revsbech, Microscale distribution of oxygen and nitrate in sediment inhabited by Nereis diversicolor. spatial patterns and estimated reaction rates. Aquat. Microb. Ecol. 34, 23-32, 2004.
54. Nithart, M., E. Alliot, and C. Salen-Picard, Production, respiration and ammonia excretion of two polychaete species in a north Norfolk saltmarsh. J. Mar. Biol. Ass. U. K. 79, 1029-1037, 1999.
55. Noble, P. A., J. S. Almeida, and C. R. Lovell, Application of neural computing methods for interpreting phospholipid fatty acid profiles of natural microbial communities. Appl. Environ. Microbiol. 66, 694-699, 2000.
56. Pearson, T. H., Functional group ecology in soft-sediment marine benthos: The role of bioturbation. Oceanogr. Mar. Biol. 39, 233-267, 2001.
57. Rabouille, C, L. Denis, K. Dedieu, G. Stora, B. Lansard, and C. Grenz, Oxygen demand in coastal marine sediments: comparing in situ microelectrodes and laboratory core incubations. J. Exp. Mar. Biol. Ecol.285, 49-69, 2003.
58. Rhoads, D. C, and J. D. Germano, Charactenzation of organism-sediment relations using sediment profile imaging - an efficient method of remote ecological monitoring of the seafloor. Mar. Ecol. Prog. Ser. 8, 115-128, 1982.
59. Rice, D. L., Early diagenesis in bioadvective sediments - relationships between the diagenesis of Beryllium-7, sediment reworking rates, and the abundance of conveyor-belt deposit-feeders. J. Mar. Res. 44,149-184, 1986.
60. Riisgård, H. U., Suspension feeding in the polychaete Nereis diversicolor. Mar. Ecol. Prog. Ser. 70, 29-37, 1991.
61. Solan, M., B. D. Wigham, I. R. Hudson, R. Kennedy, C. H. Coulon, K. Norling, H. C. Nilsson, and R. Rosenberg, In situ quantification of bioturbation using time-lapse fluorescent sediment profile imaging (f-SPI), luminophore tracers and model simulation. Mar. Ecol. Prog. Ser. 271, 1-12, 2004.
62. Steward, C. C, S. C. Nold, D. B. Ringelberg, D. C. White, and C. R. Lovell, Microbial biomass and community structures in the burrows of bromophenol producing and non-producing marine worms and surrounding sediments. Mar. Ecol. Prog. Ser. 133, 149-165, 1996.
63. Sun, M. Y., R. C. Aller, C. Lee, and S. G. Wakeham, Effects of oxygen and redox oscillation on degradation of cell-associated lipids in surficial marine sediments. Geochim. Cosmochim. Acta 66, 2003-2012, 2002a.
64. Sun, M. Y., W. J. Cai, S. B. Joye, H. B. Ding, J. H. Dai, and J. T. Hollibaugh, Degradation of algal lipids in microcosm sediments with different mixing regimes. Org. Geochem. 33,445-459, 2002b.
65. Sun, M. Y., C. Lee, and R. C. Aller, Laboratory studies of oxic and anoxic degradation of Chlorophyll-a in Long Island Sound sediments. Geochim. Cosmochim. Acta 57, 147-157, 1993.
66. Van Cappellen, P., and Y. F. Wang, Cycling of iron and manganese in surface sediments: A general theory for the coupled transport and reaction of carbon, oxygen, nitrogen, sulfur, iron, and manganese. Am. J. Sci. 296, 197-243, 1996.
67. Wenzhofer, F. and R. N. Glud, Benthic carbon mineralization in the Atlantic: a synthesis based on in situ data from the last decade. Deep-Sea Res. 149, 1255-1279, 2002.
68. Wenzhofer, F., W. Riess, and U. Luth, In situ macrofaunal respiration rates and their importance for benthic carbon mineralization on the northwestern Black Sea shelf. Ophelia, 56, 87-100, 2002.
69. Wheatcroft, R. A., P. A. Jumars, C. R. Smith, and A. R. M. Nowell, A mechanistic view of the particulate biodiffusion coefficient - step lengths, rest and transport directions. J. Mar. Res. 48, 177-207, 1990.
70. Witte, U., N. Aberle, M. Sand, and F. Wenzhofer, Rapid response of a deep-sea benthic community to POM enrichment: an in situ experimental study. Mar. Ecol. Prog. Ser. 251, 27-36, 2003a.
71. Witte, U., F. Wenzhofer, S. Sommer, A. Boetius, P. Heinz, N. Aberle, M. Sand, A. Cremer, W. R. Abraham, B. B. Jrgensen, and O. Pfannkuche, In situ experimental evidence of the fate of a phytodetritus pulse at the abyssal sea floor. Nature, 424, 763-766, 2003b.